| http://purl.uniprot.org/unirules/MF_01624#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:588548 up:source unirule:MF_01624 .
_:588549 up:source unirule:MF_01624 .
_:588550 up:source unirule:MF_01624 .
_:588551 up:source unirule:MF_01624 .
_:588552 up:source unirule:MF_01624 .
_:588553 up:source unirule:MF_01624 .
_:588554 up:source unirule:MF_01624 .
_:588555 up:source unirule:MF_01624 .
_:588556 up:source unirule:MF_01624 .
_:588557 up:source unirule:MF_01624 .
_:588558 up:source unirule:MF_01624 .
_:588559 up:source unirule:MF_01624 .
_:588560 up:source unirule:MF_01624 .
_:588561 up:source unirule:MF_01624 .
_:588562 up:source unirule:MF_01624 .
_:588563 up:source unirule:MF_01624 .
_:588564 up:source unirule:MF_01624 .
_:588565 up:source unirule:MF_01624 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0005737 ,
GO:0030612 ,
keyword:560 ,
keyword:59 ,
keyword:676 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.20.4.4' ;
up:fullName 'Arsenate reductase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'arsC' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)].' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the low molecular weight phosphotyrosine protein phosphatase family. Thioredoxin-coupled ArsC subfamily.' .
?case8 up:classifiedWith keyword:1015 .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Redox-active; alternate' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Redox-active; alternate' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
_:588566 a rdf:Statement ;
up:attribution _:588548 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:588567 a rdf:Statement ;
up:attribution _:588549 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:588568 a rdf:Statement ;
up:attribution _:588550 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:588569 a rdf:Statement ;
up:attribution _:588551 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:588570 a rdf:Statement ;
up:attribution _:588552 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:588571 a rdf:Statement ;
up:attribution _:588553 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:588572 a rdf:Statement ;
up:attribution _:588554 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:59 .
_:588573 a rdf:Statement ;
up:attribution _:588555 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:588574 a rdf:Statement ;
up:attribution _:588556 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:588575 a rdf:Statement ;
up:attribution _:588557 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:676 .
_:588576 a rdf:Statement ;
up:attribution _:588558 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030612 .
_:588577 a rdf:Statement ;
up:attribution _:588559 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:588578 a rdf:Statement ;
up:attribution _:588560 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:588579 a rdf:Statement ;
up:source unirule:MF_01624 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:588580 a rdf:Statement ;
up:attribution _:588561 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:588581 a rdf:Statement ;
up:source unirule:MF_01624 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:588582 a rdf:Statement ;
up:attribution _:588562 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:588583 a rdf:Statement ;
up:source unirule:MF_01624 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:588584 a rdf:Statement ;
up:attribution _:588563 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:588585 a rdf:Statement ;
up:source unirule:MF_01624 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:588586 a rdf:Statement ;
up:attribution _:588564 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:588587 a rdf:Statement ;
up:source unirule:MF_01624 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:588588 a rdf:Statement ;
up:attribution _:588565 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01624
#Rule MF_01624 Created by:? on:2005-12-07 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01624 .
?thisOrganism rdfs:subClassOf+ taxon:1239 .
BIND(URI(CONCAT(STR(?this), '#MF_01624a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01624a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01624a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01624a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01624a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch43 faldo:location ?templateMotifSequenceMatchRegionP0A00644 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A00646 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A006MF_0162439 .
?templateMotifSequenceMatchRegionP0A00644 faldo:begin ?templateMotifSequenceMatchBeginP0A00645 .
?templateMotifSequenceMatchBeginP0A00645 faldo:position ?templateMotifSequenceMatchBeginPositionP0A00640 ;
faldo:reference isoform:P0A006-1 .
?templateMotifSequenceProfileAlignmentOperationP0A00646 edam:has_input signature:MF_01624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch47 faldo:location ?targetMotifMatchRegionMatch48 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0162450 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A006MF_0162441 .
?targetMotifMatchRegionMatch48 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0162449 .
?targetMotifMatchRegionMatchBeginMF_0162449 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0162442 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0162450 edam:has_input signature:MF_01624 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_4) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A006MF_0162439, 1, (STRLEN(?templateMotifCigarP0A006MF_0162439) - STRLEN(REPLACE(?templateMotifCigarP0A006MF_0162439, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP0A00640) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A006MF_0162441, 1, (STRLEN(?targetMotifMatchCigarP0A006MF_0162441) - STRLEN(REPLACE(?targetMotifMatchCigarP0A006MF_0162441, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A006MF_0162441, 1, (STRLEN(?targetMotifMatchCigarP0A006MF_0162441) - STRLEN(REPLACE(?targetMotifMatchCigarP0A006MF_0162441, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0162442) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A006MF_0162439, 1, (STRLEN(?templateMotifCigarP0A006MF_0162439) - STRLEN(REPLACE(?templateMotifCigarP0A006MF_0162439, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP0A00640) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A006MF_0162441, 1, (STRLEN(?targetMotifMatchCigarP0A006MF_0162441) - STRLEN(REPLACE(?targetMotifMatchCigarP0A006MF_0162441, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A006MF_0162441, 1, (STRLEN(?targetMotifMatchCigarP0A006MF_0162441) - STRLEN(REPLACE(?targetMotifMatchCigarP0A006MF_0162441, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0162442) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01624a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionP0A00661 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A00663 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A006MF_0162456 .
?templateMotifSequenceMatchRegionP0A00661 faldo:begin ?templateMotifSequenceMatchBeginP0A00662 .
?templateMotifSequenceMatchBeginP0A00662 faldo:position ?templateMotifSequenceMatchBeginPositionP0A00657 ;
faldo:reference isoform:P0A006-1 .
?templateMotifSequenceProfileAlignmentOperationP0A00663 edam:has_input signature:MF_01624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0162467 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A006MF_0162458 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0162466 .
?targetMotifMatchRegionMatchBeginMF_0162466 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0162459 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0162467 edam:has_input signature:MF_01624 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_5) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A006MF_0162456, 1, (STRLEN(?templateMotifCigarP0A006MF_0162456) - STRLEN(REPLACE(?templateMotifCigarP0A006MF_0162456, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP0A00657) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A006MF_0162458, 1, (STRLEN(?targetMotifMatchCigarP0A006MF_0162458) - STRLEN(REPLACE(?targetMotifMatchCigarP0A006MF_0162458, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A006MF_0162458, 1, (STRLEN(?targetMotifMatchCigarP0A006MF_0162458) - STRLEN(REPLACE(?targetMotifMatchCigarP0A006MF_0162458, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0162459) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A006MF_0162456, 1, (STRLEN(?templateMotifCigarP0A006MF_0162456) - STRLEN(REPLACE(?templateMotifCigarP0A006MF_0162456, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP0A00657) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A006MF_0162458, 1, (STRLEN(?targetMotifMatchCigarP0A006MF_0162458) - STRLEN(REPLACE(?targetMotifMatchCigarP0A006MF_0162458, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A006MF_0162458, 1, (STRLEN(?targetMotifMatchCigarP0A006MF_0162458) - STRLEN(REPLACE(?targetMotifMatchCigarP0A006MF_0162458, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0162459) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs2t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01624a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionP0A00678 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A00680 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A006MF_0162473 .
?templateMotifSequenceMatchRegionP0A00678 faldo:begin ?templateMotifSequenceMatchBeginP0A00679 .
?templateMotifSequenceMatchBeginP0A00679 faldo:position ?templateMotifSequenceMatchBeginPositionP0A00674 ;
faldo:reference isoform:P0A006-1 .
?templateMotifSequenceProfileAlignmentOperationP0A00680 edam:has_input signature:MF_01624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0162484 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A006MF_0162475 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0162483 .
?targetMotifMatchRegionMatchBeginMF_0162483 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0162476 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0162484 edam:has_input signature:MF_01624 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A006MF_0162473, 1, (STRLEN(?templateMotifCigarP0A006MF_0162473) - STRLEN(REPLACE(?templateMotifCigarP0A006MF_0162473, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP0A00674) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A006MF_0162475, 1, (STRLEN(?targetMotifMatchCigarP0A006MF_0162475) - STRLEN(REPLACE(?targetMotifMatchCigarP0A006MF_0162475, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A006MF_0162475, 1, (STRLEN(?targetMotifMatchCigarP0A006MF_0162475) - STRLEN(REPLACE(?targetMotifMatchCigarP0A006MF_0162475, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0162476) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs3t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01624a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionP0A00693 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A00695 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A006MF_0162488 .
?templateMotifSequenceMatchRegionP0A00693 faldo:begin ?templateMotifSequenceMatchBeginP0A00694 .
?templateMotifSequenceMatchBeginP0A00694 faldo:position ?templateMotifSequenceMatchBeginPositionP0A00689 ;
faldo:reference isoform:P0A006-1 .
?templateMotifSequenceProfileAlignmentOperationP0A00695 edam:has_input signature:MF_01624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0162499 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A006MF_0162490 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0162498 .
?targetMotifMatchRegionMatchBeginMF_0162498 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0162491 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0162499 edam:has_input signature:MF_01624 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A006MF_0162488, 1, (STRLEN(?templateMotifCigarP0A006MF_0162488) - STRLEN(REPLACE(?templateMotifCigarP0A006MF_0162488, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP0A00689) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A006MF_0162490, 1, (STRLEN(?targetMotifMatchCigarP0A006MF_0162490) - STRLEN(REPLACE(?targetMotifMatchCigarP0A006MF_0162490, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A006MF_0162490, 1, (STRLEN(?targetMotifMatchCigarP0A006MF_0162490) - STRLEN(REPLACE(?targetMotifMatchCigarP0A006MF_0162490, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0162491) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs3t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01624a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionP0A006108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A006110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A006MF_01624103 .
?templateMotifSequenceMatchRegionP0A006108 faldo:begin ?templateMotifSequenceMatchBeginP0A006109 .
?templateMotifSequenceMatchBeginP0A006109 faldo:position ?templateMotifSequenceMatchBeginPositionP0A006104 ;
faldo:reference isoform:P0A006-1 .
?templateMotifSequenceProfileAlignmentOperationP0A006110 edam:has_input signature:MF_01624 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01624114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A006MF_01624105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01624113 .
?targetMotifMatchRegionMatchBeginMF_01624113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01624106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01624114 edam:has_input signature:MF_01624 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A006MF_01624103, 1, (STRLEN(?templateMotifCigarP0A006MF_01624103) - STRLEN(REPLACE(?templateMotifCigarP0A006MF_01624103, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP0A006104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A006MF_01624105, 1, (STRLEN(?targetMotifMatchCigarP0A006MF_01624105) - STRLEN(REPLACE(?targetMotifMatchCigarP0A006MF_01624105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A006MF_01624105, 1, (STRLEN(?targetMotifMatchCigarP0A006MF_01624105) - STRLEN(REPLACE(?targetMotifMatchCigarP0A006MF_01624105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_01624106) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs3t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01624a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag118) .
}
BIND(IF((BOUND(?tagFT_4) || BOUND(?tagFT_5)), ?caseWithTag118, ?UNBOUND_VARIABLE) AS ?case8) .
}
"xsd:string |
