| http://purl.uniprot.org/unirules/MF_01653#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:603528 up:source unirule:MF_01653 .
_:603529 up:source unirule:MF_01653 .
_:603530 up:source unirule:MF_01653 .
_:603531 up:source unirule:MF_01653 .
_:603532 up:source unirule:MF_01653 .
_:603533 up:source unirule:MF_01653 .
_:603534 up:source unirule:MF_01653 .
_:603535 up:source unirule:MF_01653 .
_:603536 up:source unirule:MF_01653 .
_:603537 up:source unirule:MF_01653 .
_:603538 up:source unirule:MF_01653 .
_:603539 up:source unirule:MF_01653 .
_:603540 up:source unirule:MF_01653 .
_:603541 up:source unirule:MF_01653 .
_:603542 up:source unirule:MF_01653 .
_:603543 up:source unirule:MF_01653 .
_:603544 up:source unirule:MF_01653 .
_:603545 up:source unirule:MF_01653 .
_:603546 up:source unirule:MF_01653 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0005506 ,
GO:0019380 ,
GO:0047070 ,
keyword:223 ,
keyword:408 ,
keyword:560 ,
keyword:58 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.13.11.16' ;
up:fullName '2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase' ;
rdf:type up:Structured_Name .
?name1 up:fullName '3-carboxyethylcatechol 2,3-dioxygenase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'mhpB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the non-heme iron(II)-dependent oxidative cleavage of 2,3-dihydroxyphenylpropionic acid and 2,3-dihydroxicinnamic acid into 2-hydroxy-6-ketononadienedioate and 2-hydroxy-6-ketononatrienedioate, respectively.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:29033 ;
rdf:type up:Cofactor_Annotation .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Aromatic compound metabolism; 3-phenylpropanoate degradation.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the LigB/MhpB extradiol dioxygenase family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
_:603547 a rdf:Statement ;
up:attribution _:603528 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:603548 a rdf:Statement ;
up:attribution _:603529 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:603549 a rdf:Statement ;
up:attribution _:603530 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:603550 a rdf:Statement ;
up:attribution _:603531 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:603551 a rdf:Statement ;
up:attribution _:603532 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:603552 a rdf:Statement ;
up:attribution _:603533 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:603553 a rdf:Statement ;
up:attribution _:603534 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:603554 a rdf:Statement ;
up:attribution _:603535 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:603555 a rdf:Statement ;
up:attribution _:603536 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:603556 a rdf:Statement ;
up:attribution _:603537 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:603557 a rdf:Statement ;
up:attribution _:603538 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:58 .
_:603558 a rdf:Statement ;
up:attribution _:603539 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:223 .
_:603559 a rdf:Statement ;
up:attribution _:603540 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:603560 a rdf:Statement ;
up:attribution _:603541 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:603561 a rdf:Statement ;
up:attribution _:603542 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:603562 a rdf:Statement ;
up:attribution _:603543 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0047070 .
_:603563 a rdf:Statement ;
up:attribution _:603544 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019380 .
_:603564 a rdf:Statement ;
up:source unirule:MF_01653 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:603565 a rdf:Statement ;
up:attribution _:603545 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:603566 a rdf:Statement ;
up:source unirule:MF_01653 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:603567 a rdf:Statement ;
up:attribution _:603546 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01653
#Rule MF_01653 Created by:? on:2008-04-29 Modified by:Catherine Rivoire on:2024-03-12
VALUES ?supertaxon24 {taxon:201174 taxon:1224}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01653 .
?thisOrganism rdfs:subClassOf+ ?supertaxon24 .
BIND(URI(CONCAT(STR(?this), '#MF_01653a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01653a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01653a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01653a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01653a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01653a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01653a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01653a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01653a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionP0ABR930 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABR932 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABR9MF_0165325 .
?templateMotifSequenceMatchRegionP0ABR930 faldo:begin ?templateMotifSequenceMatchBeginP0ABR931 .
?templateMotifSequenceMatchBeginP0ABR931 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABR926 ;
faldo:reference isoform:P0ABR9-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABR932 edam:has_input signature:MF_01653 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0165336 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABR9MF_0165327 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0165335 .
?targetMotifMatchRegionMatchBeginMF_0165335 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0165328 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0165336 edam:has_input signature:MF_01653 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABR9MF_0165325, 1, (STRLEN(?templateMotifCigarP0ABR9MF_0165325) - STRLEN(REPLACE(?templateMotifCigarP0ABR9MF_0165325, CONCAT('^(?:-*[^-]){', STR(((115 - ?templateMotifSequenceMatchBeginPositionP0ABR926) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABR9MF_0165327, 1, (STRLEN(?targetMotifMatchCigarP0ABR9MF_0165327) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR9MF_0165327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABR9MF_0165327, 1, (STRLEN(?targetMotifMatchCigarP0ABR9MF_0165327) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR9MF_0165327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0165328) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01653a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionP0ABR945 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABR947 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABR9MF_0165340 .
?templateMotifSequenceMatchRegionP0ABR945 faldo:begin ?templateMotifSequenceMatchBeginP0ABR946 .
?templateMotifSequenceMatchBeginP0ABR946 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABR941 ;
faldo:reference isoform:P0ABR9-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABR947 edam:has_input signature:MF_01653 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0165351 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABR9MF_0165342 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0165350 .
?targetMotifMatchRegionMatchBeginMF_0165350 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0165343 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0165351 edam:has_input signature:MF_01653 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABR9MF_0165340, 1, (STRLEN(?templateMotifCigarP0ABR9MF_0165340) - STRLEN(REPLACE(?templateMotifCigarP0ABR9MF_0165340, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP0ABR941) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABR9MF_0165342, 1, (STRLEN(?targetMotifMatchCigarP0ABR9MF_0165342) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR9MF_0165342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABR9MF_0165342, 1, (STRLEN(?targetMotifMatchCigarP0ABR9MF_0165342) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABR9MF_0165342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0165343) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01653a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
}
"xsd:string |
