| http://purl.uniprot.org/unirules/MF_01654#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:603878 up:source unirule:MF_01654 .
_:603879 up:source unirule:MF_01654 .
_:603880 up:source unirule:MF_01654 .
_:603881 up:source unirule:MF_01654 .
_:603882 up:source unirule:MF_01654 .
_:603883 up:source unirule:MF_01654 .
_:603884 up:source unirule:MF_01654 .
_:603885 up:source unirule:MF_01654 .
_:603886 up:source unirule:MF_01654 .
_:603887 up:source unirule:MF_01654 .
_:603888 up:source unirule:MF_01654 .
_:603889 up:source unirule:MF_01654 .
_:603890 up:source unirule:MF_01654 .
_:603891 up:source unirule:MF_01654 .
_:603892 up:source unirule:MF_01654 .
_:603893 up:source unirule:MF_01654 .
_:603894 up:source unirule:MF_01654 .
_:603895 up:source unirule:MF_01654 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation10 ,
?annotation11 ,
?annotation12 ;
up:classifiedWith GO:0018771 ,
GO:0019380 ,
keyword:378 ,
keyword:58 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.7.1.14' ;
up:fullName '2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase' ;
rdf:type up:Structured_Name .
?name1 up:fullName '2-hydroxy-6-ketonona-2,4-diene-1,9-dioic acid 5,6-hydrolase' ;
rdf:type up:Structured_Name .
?name2 up:fullName '2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioic acid 5,6-hydrolase' ;
rdf:type up:Structured_Name .
?name3 up:fullName '2-hydroxy-6-oxonona-2,4-diene-1,9-dioic acid 5,6-hydrolase' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'mhpC' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the cleavage of the C5-C6 bond of 2-hydroxy-6-oxononadienedioate and 2-hydroxy-6-oxononatrienedioate, a dienol ring fission product of the bacterial meta-cleavage pathway for degradation of phenylpropionic acid.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 a up:Pathway_Annotation ;
rdfs:comment 'Aromatic compound metabolism; 3-phenylpropanoate degradation.' .
?annotation11 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the AB hydrolase superfamily. MhpC family.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Catalytic role in ketonization of the dienol substrate (substrate destabilization)' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
_:603896 a rdf:Statement ;
up:attribution _:603878 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:603897 a rdf:Statement ;
up:attribution _:603879 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:603898 a rdf:Statement ;
up:attribution _:603880 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:603899 a rdf:Statement ;
up:attribution _:603881 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:603900 a rdf:Statement ;
up:attribution _:603882 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:603901 a rdf:Statement ;
up:attribution _:603883 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:603902 a rdf:Statement ;
up:attribution _:603884 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:603903 a rdf:Statement ;
up:attribution _:603885 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:603904 a rdf:Statement ;
up:attribution _:603886 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:603905 a rdf:Statement ;
up:attribution _:603887 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:603906 a rdf:Statement ;
up:attribution _:603888 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:603907 a rdf:Statement ;
up:attribution _:603889 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:58 .
_:603908 a rdf:Statement ;
up:attribution _:603890 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:603909 a rdf:Statement ;
up:attribution _:603891 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0018771 .
_:603910 a rdf:Statement ;
up:attribution _:603892 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019380 .
_:603911 a rdf:Statement ;
up:source unirule:MF_01654 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:603912 a rdf:Statement ;
up:attribution _:603893 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:603913 a rdf:Statement ;
up:source unirule:MF_01654 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:603914 a rdf:Statement ;
up:attribution _:603894 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:603915 a rdf:Statement ;
up:source unirule:MF_01654 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:603916 a rdf:Statement ;
up:attribution _:603895 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01654
#Rule MF_01654 Created by:? on:2008-04-30 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01654 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01654a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01654a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01654a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01654a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01654a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01654a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01654a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01654a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01654a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01654a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch35 faldo:location ?templateMotifSequenceMatchRegionP7704436 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7704438 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77044MF_0165431 .
?templateMotifSequenceMatchRegionP7704436 faldo:begin ?templateMotifSequenceMatchBeginP7704437 .
?templateMotifSequenceMatchBeginP7704437 faldo:position ?templateMotifSequenceMatchBeginPositionP7704432 ;
faldo:reference isoform:P77044-1 .
?templateMotifSequenceProfileAlignmentOperationP7704438 edam:has_input signature:MF_01654 ;
rdf:type edam:operation_0300 .
?targetMotifMatch39 faldo:location ?targetMotifMatchRegionMatch40 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0165442 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77044MF_0165433 .
?targetMotifMatchRegionMatch40 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0165441 .
?targetMotifMatchRegionMatchBeginMF_0165441 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0165434 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0165442 edam:has_input signature:MF_01654 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77044MF_0165431, 1, (STRLEN(?templateMotifCigarP77044MF_0165431) - STRLEN(REPLACE(?templateMotifCigarP77044MF_0165431, CONCAT('^(?:-*[^-]){', STR(((267 - ?templateMotifSequenceMatchBeginPositionP7704432) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77044MF_0165433, 1, (STRLEN(?targetMotifMatchCigarP77044MF_0165433) - STRLEN(REPLACE(?targetMotifMatchCigarP77044MF_0165433, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77044MF_0165433, 1, (STRLEN(?targetMotifMatchCigarP77044MF_0165433) - STRLEN(REPLACE(?targetMotifMatchCigarP77044MF_0165433, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) .
BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0165434) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01654a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch50 faldo:location ?templateMotifSequenceMatchRegionP7704451 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7704453 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77044MF_0165446 .
?templateMotifSequenceMatchRegionP7704451 faldo:begin ?templateMotifSequenceMatchBeginP7704452 .
?templateMotifSequenceMatchBeginP7704452 faldo:position ?templateMotifSequenceMatchBeginPositionP7704447 ;
faldo:reference isoform:P77044-1 .
?templateMotifSequenceProfileAlignmentOperationP7704453 edam:has_input signature:MF_01654 ;
rdf:type edam:operation_0300 .
?targetMotifMatch54 faldo:location ?targetMotifMatchRegionMatch55 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0165457 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77044MF_0165448 .
?targetMotifMatchRegionMatch55 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0165456 .
?targetMotifMatchRegionMatchBeginMF_0165456 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0165449 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0165457 edam:has_input signature:MF_01654 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77044MF_0165446, 1, (STRLEN(?templateMotifCigarP77044MF_0165446) - STRLEN(REPLACE(?templateMotifCigarP77044MF_0165446, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionP7704447) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77044MF_0165448, 1, (STRLEN(?targetMotifMatchCigarP77044MF_0165448) - STRLEN(REPLACE(?targetMotifMatchCigarP77044MF_0165448, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77044MF_0165448, 1, (STRLEN(?targetMotifMatchCigarP77044MF_0165448) - STRLEN(REPLACE(?targetMotifMatchCigarP77044MF_0165448, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0165449) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01654a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionP7704466 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7704468 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77044MF_0165461 .
?templateMotifSequenceMatchRegionP7704466 faldo:begin ?templateMotifSequenceMatchBeginP7704467 .
?templateMotifSequenceMatchBeginP7704467 faldo:position ?templateMotifSequenceMatchBeginPositionP7704462 ;
faldo:reference isoform:P77044-1 .
?templateMotifSequenceProfileAlignmentOperationP7704468 edam:has_input signature:MF_01654 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0165472 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77044MF_0165463 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0165471 .
?targetMotifMatchRegionMatchBeginMF_0165471 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0165464 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0165472 edam:has_input signature:MF_01654 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77044MF_0165461, 1, (STRLEN(?templateMotifCigarP77044MF_0165461) - STRLEN(REPLACE(?templateMotifCigarP77044MF_0165461, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionP7704462) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77044MF_0165463, 1, (STRLEN(?targetMotifMatchCigarP77044MF_0165463) - STRLEN(REPLACE(?targetMotifMatchCigarP77044MF_0165463, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77044MF_0165463, 1, (STRLEN(?targetMotifMatchCigarP77044MF_0165463) - STRLEN(REPLACE(?targetMotifMatchCigarP77044MF_0165463, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0165464) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01654a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
}
"xsd:string |
