| http://purl.uniprot.org/unirules/MF_01659#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:605822 up:source unirule:MF_01659 .
_:605823 up:source unirule:MF_01659 .
_:605824 up:source unirule:MF_01659 .
_:605825 up:source unirule:MF_01659 .
_:605826 up:source unirule:MF_01659 .
_:605827 up:source unirule:MF_01659 .
_:605828 up:source unirule:MF_01659 .
_:605829 up:source unirule:MF_01659 .
_:605830 up:source unirule:MF_01659 .
_:605831 up:source unirule:MF_01659 .
_:605832 up:source unirule:MF_01659 .
_:605833 up:source unirule:MF_01659 .
_:605834 up:source unirule:MF_01659 .
_:605835 up:source unirule:MF_01659 .
_:605836 up:source unirule:MF_01659 .
_:605837 up:source unirule:MF_01659 .
_:605838 up:source unirule:MF_01659 .
_:605839 up:source unirule:MF_01659 .
_:605840 up:source unirule:MF_01659 .
_:605841 up:source unirule:MF_01659 .
_:605842 up:source unirule:MF_01659 .
_:605843 up:source unirule:MF_01659 .
_:605844 up:source unirule:MF_01659 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0000287 ,
GO:0030145 ,
GO:0030976 ,
GO:0070204 ,
keyword:460 ,
keyword:464 ,
keyword:479 ,
keyword:786 ,
keyword:808 .
?gene0 skos:prefLabel 'menD' .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC).' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:cofactor chebi:18420 ,
chebi:29035 ;
rdf:type up:Cofactor_Annotation .
?annotation5 up:cofactor chebi:58937 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 thiamine pyrophosphate per subunit.' .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Quinol/quinone metabolism; 1,4-dihydroxy-2-naphthoate biosynthesis; 1,4-dihydroxy-2-naphthoate from chorismate: step 2/7.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the TPP enzyme family. MenD subfamily.' .
?case9 up:classifiedWith GO:0042372 ;
up:recommendedName ?name10 .
?name10 up:ecName '2.2.1.9' ;
up:fullName '2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase' ;
up:shortName 'SEPHCHC synthase' ;
rdf:type up:Structured_Name .
?case11 up:alternativeName ?name13 ;
up:classifiedWith GO:0009234 ,
keyword:474 ;
up:recommendedName ?name12 .
?name12 up:ecName '2.2.1.9' ;
up:fullName '2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase' ;
up:shortName 'SEPHCHC synthase' ;
rdf:type up:Structured_Name .
?name13 up:fullName 'Menaquinone biosynthesis protein MenD' ;
rdf:type up:Structured_Name .
_:605845 a rdf:Statement ;
up:attribution _:605822 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:605846 a rdf:Statement ;
up:attribution _:605823 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:605847 a rdf:Statement ;
up:attribution _:605824 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:605848 a rdf:Statement ;
up:attribution _:605825 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:605849 a rdf:Statement ;
up:attribution _:605826 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:605850 a rdf:Statement ;
up:attribution _:605827 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:605851 a rdf:Statement ;
up:attribution _:605828 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:605852 a rdf:Statement ;
up:attribution _:605829 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:605853 a rdf:Statement ;
up:attribution _:605830 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:605854 a rdf:Statement ;
up:attribution _:605831 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:605855 a rdf:Statement ;
up:attribution _:605832 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:605856 a rdf:Statement ;
up:attribution _:605833 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:786 .
_:605857 a rdf:Statement ;
up:attribution _:605834 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:605858 a rdf:Statement ;
up:attribution _:605835 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070204 .
_:605859 a rdf:Statement ;
up:attribution _:605836 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:605860 a rdf:Statement ;
up:attribution _:605837 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030145 .
_:605861 a rdf:Statement ;
up:attribution _:605838 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030976 .
_:605862 a rdf:Statement ;
up:attribution _:605839 ;
rdf:subject ?case9 ;
rdf:predicate up:recommendedName ;
rdf:object ?name10 .
_:605863 a rdf:Statement ;
up:attribution _:605840 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042372 .
_:605864 a rdf:Statement ;
up:attribution _:605841 ;
rdf:subject ?case11 ;
rdf:predicate up:recommendedName ;
rdf:object ?name12 .
_:605865 a rdf:Statement ;
up:attribution _:605842 ;
rdf:subject ?case11 ;
rdf:predicate up:alternativeName ;
rdf:object ?name13 .
_:605866 a rdf:Statement ;
up:attribution _:605843 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:474 .
_:605867 a rdf:Statement ;
up:attribution _:605844 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009234 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01659
#Rule MF_01659 Created by:? on:2008-05-23 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon14 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01659 .
?thisOrganism rdfs:subClassOf+ ?supertaxon14 .
BIND(URI(CONCAT(STR(?this), '#MF_01659a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01659a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01659a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01659a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01659a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01659a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01659a8')) AS ?annotation8) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
BIND(?this AS ?case9) .
BIND(URI(CONCAT(STR(?this), '#MF_01659a10')) AS ?name10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1117 .
})) .
BIND(?this AS ?case11) .
BIND(URI(CONCAT(STR(?this), '#MF_01659a12')) AS ?name12) .
BIND(URI(CONCAT(STR(?this), '#MF_01659a13')) AS ?name13) .
}
}
"xsd:string |
