| http://purl.uniprot.org/unirules/MF_01696#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:620732 up:source unirule:MF_01696 .
_:620733 up:source unirule:MF_01696 .
_:620734 up:source unirule:MF_01696 .
_:620735 up:source unirule:MF_01696 .
_:620736 up:source unirule:MF_01696 .
_:620737 up:source unirule:MF_01696 .
_:620738 up:source unirule:MF_01696 .
_:620739 up:source unirule:MF_01696 .
_:620740 up:source unirule:MF_01696 .
_:620741 up:source unirule:MF_01696 .
_:620742 up:source unirule:MF_01696 .
_:620743 up:source unirule:MF_01696 .
_:620744 up:source unirule:MF_01696 .
_:620745 up:source unirule:MF_01696 .
_:620746 up:source unirule:MF_01696 .
_:620747 up:source unirule:MF_01696 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0008270 ,
GO:0010125 ,
GO:0019213 ,
keyword:378 ,
keyword:479 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.1.103' ;
up:fullName '1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase' ;
up:shortName 'GlcNAc-Ins deacetylase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'mshB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 zinc ion per subunit.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MshB deacetylase family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:29105 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:29105 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:29105 .
_:620748 a rdf:Statement ;
up:attribution _:620732 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:620749 a rdf:Statement ;
up:attribution _:620733 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:620750 a rdf:Statement ;
up:attribution _:620734 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:620751 a rdf:Statement ;
up:attribution _:620735 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:620752 a rdf:Statement ;
up:attribution _:620736 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:620753 a rdf:Statement ;
up:attribution _:620737 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:620754 a rdf:Statement ;
up:attribution _:620738 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:620755 a rdf:Statement ;
up:attribution _:620739 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:620756 a rdf:Statement ;
up:attribution _:620740 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:620757 a rdf:Statement ;
up:attribution _:620741 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:620758 a rdf:Statement ;
up:attribution _:620742 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:620759 a rdf:Statement ;
up:attribution _:620743 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019213 .
_:620760 a rdf:Statement ;
up:attribution _:620744 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010125 .
_:620761 a rdf:Statement ;
up:source unirule:MF_01696 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:620762 a rdf:Statement ;
up:attribution _:620745 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:620763 a rdf:Statement ;
up:source unirule:MF_01696 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:620764 a rdf:Statement ;
up:attribution _:620746 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:620765 a rdf:Statement ;
up:source unirule:MF_01696 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:620766 a rdf:Statement ;
up:attribution _:620747 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01696
#Rule MF_01696 Created by:? on:2010-09-20 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01696 .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(URI(CONCAT(STR(?this), '#MF_01696a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01696a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01696a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01696a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01696a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01696a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch33 faldo:location ?templateMotifSequenceMatchRegionP9WJN334 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJN336 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WJN3MF_0169629 .
?templateMotifSequenceMatchRegionP9WJN334 faldo:begin ?templateMotifSequenceMatchBeginP9WJN335 .
?templateMotifSequenceMatchBeginP9WJN335 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJN330 ;
faldo:reference isoform:P9WJN3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WJN336 edam:has_input signature:MF_01696 ;
rdf:type edam:operation_0300 .
?targetMotifMatch37 faldo:location ?targetMotifMatchRegionMatch38 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169640 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WJN3MF_0169631 .
?targetMotifMatchRegionMatch38 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169639 .
?targetMotifMatchRegionMatchBeginMF_0169639 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169632 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169640 edam:has_input signature:MF_01696 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJN3MF_0169629, 1, (STRLEN(?templateMotifCigarP9WJN3MF_0169629) - STRLEN(REPLACE(?templateMotifCigarP9WJN3MF_0169629, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP9WJN330) + 1)), '}'), '')))), '[a-z]', '')) AS ?step141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJN3MF_0169631, 1, (STRLEN(?targetMotifMatchCigarP9WJN3MF_0169631) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJN3MF_0169631, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJN3MF_0169631, 1, (STRLEN(?targetMotifMatchCigarP9WJN3MF_0169631) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJN3MF_0169631, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), '')))), '[^-]', ''))) AS ?step242) .
BIND(((?step242 + ?targetMotifMatchRegionMatchBeginPositionMF_0169632) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01696a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch48 faldo:location ?templateMotifSequenceMatchRegionP9WJN349 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJN351 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WJN3MF_0169644 .
?templateMotifSequenceMatchRegionP9WJN349 faldo:begin ?templateMotifSequenceMatchBeginP9WJN350 .
?templateMotifSequenceMatchBeginP9WJN350 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJN345 ;
faldo:reference isoform:P9WJN3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WJN351 edam:has_input signature:MF_01696 ;
rdf:type edam:operation_0300 .
?targetMotifMatch52 faldo:location ?targetMotifMatchRegionMatch53 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169655 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WJN3MF_0169646 .
?targetMotifMatchRegionMatch53 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169654 .
?targetMotifMatchRegionMatchBeginMF_0169654 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169647 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169655 edam:has_input signature:MF_01696 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJN3MF_0169644, 1, (STRLEN(?templateMotifCigarP9WJN3MF_0169644) - STRLEN(REPLACE(?templateMotifCigarP9WJN3MF_0169644, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP9WJN345) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJN3MF_0169646, 1, (STRLEN(?targetMotifMatchCigarP9WJN3MF_0169646) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJN3MF_0169646, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJN3MF_0169646, 1, (STRLEN(?targetMotifMatchCigarP9WJN3MF_0169646) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJN3MF_0169646, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0169647) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01696a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionP9WJN364 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJN366 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WJN3MF_0169659 .
?templateMotifSequenceMatchRegionP9WJN364 faldo:begin ?templateMotifSequenceMatchBeginP9WJN365 .
?templateMotifSequenceMatchBeginP9WJN365 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJN360 ;
faldo:reference isoform:P9WJN3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WJN366 edam:has_input signature:MF_01696 ;
rdf:type edam:operation_0300 .
?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169670 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WJN3MF_0169661 .
?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169669 .
?targetMotifMatchRegionMatchBeginMF_0169669 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169662 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169670 edam:has_input signature:MF_01696 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJN3MF_0169659, 1, (STRLEN(?templateMotifCigarP9WJN3MF_0169659) - STRLEN(REPLACE(?templateMotifCigarP9WJN3MF_0169659, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionP9WJN360) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJN3MF_0169661, 1, (STRLEN(?targetMotifMatchCigarP9WJN3MF_0169661) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJN3MF_0169661, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJN3MF_0169661, 1, (STRLEN(?targetMotifMatchCigarP9WJN3MF_0169661) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJN3MF_0169661, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0169662) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01696a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
}
"xsd:string |
