| http://purl.uniprot.org/unirules/MF_01800#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:631882 up:source unirule:MF_01800 .
_:631883 up:source unirule:MF_01800 .
_:631884 up:source unirule:MF_01800 .
_:631885 up:source unirule:MF_01800 .
_:631886 up:source unirule:MF_01800 .
_:631887 up:source unirule:MF_01800 .
_:631888 up:source unirule:MF_01800 .
_:631889 up:source unirule:MF_01800 .
_:631890 up:source unirule:MF_01800 .
_:631891 up:source unirule:MF_01800 .
_:631892 up:source unirule:MF_01800 .
_:631893 up:source unirule:MF_01800 .
_:631894 up:source unirule:MF_01800 .
_:631895 up:source unirule:MF_01800 .
_:631896 up:source unirule:MF_01800 .
_:631897 up:source unirule:MF_01800 .
_:631898 up:source unirule:MF_01800 .
_:631899 up:source unirule:MF_01800 .
_:631900 up:source unirule:MF_01800 .
_:631901 up:source unirule:MF_01800 .
_:631902 up:source unirule:MF_01800 .
_:631903 up:source unirule:MF_01800 .
_:631904 up:source unirule:MF_01800 .
_:631905 up:source unirule:MF_01800 .
_:631906 up:source unirule:MF_01800 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0003677 ,
GO:0005524 ,
GO:0005737 ,
GO:0006260 ,
GO:0007059 ,
keyword:131 ,
keyword:132 ,
keyword:159 ,
keyword:175 ,
keyword:226 ,
keyword:238 ,
keyword:547 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Chromosome partition protein MukB' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Structural maintenance of chromosome-related protein' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'mukB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homodimerization via its hinge domain. Binds to DNA via its C-terminal region. Interacts, and probably forms a ternary complex, with MukE and MukF via its C-terminal region. The complex formation is stimulated by calcium or magnesium. Interacts with tubulin-related protein FtsZ.' .
?annotation5 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Restricted to the nucleoid region' .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Domain_Annotation ;
rdfs:comment 'The hinge domain, which separates the large intramolecular coiled coil regions, allows the homodimerization, forming a V-shaped homodimer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the SMC family. MukB subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Flexible hinge' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:30616 .
?sam22 up:classifiedWith keyword:175 .
?coiledCoil23 faldo:begin ?coiledCoilb24 ;
faldo:end ?coiledCoile25 .
?coiledCoilb24 faldo:position ?coiledCoilbp26 .
?coiledCoile25 faldo:position ?coiledCoilep27 .
?keyword28 up:range ?coiledCoil23 .
_:631907 a rdf:Statement ;
up:attribution _:631882 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:631908 a rdf:Statement ;
up:attribution _:631883 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:631909 a rdf:Statement ;
up:attribution _:631884 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:631910 a rdf:Statement ;
up:attribution _:631885 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:631911 a rdf:Statement ;
up:attribution _:631886 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:631912 a rdf:Statement ;
up:attribution _:631887 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:631913 a rdf:Statement ;
up:attribution _:631888 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:631914 a rdf:Statement ;
up:attribution _:631889 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:631915 a rdf:Statement ;
up:attribution _:631890 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:631916 a rdf:Statement ;
up:attribution _:631891 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:131 .
_:631917 a rdf:Statement ;
up:attribution _:631892 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:132 .
_:631918 a rdf:Statement ;
up:attribution _:631893 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:159 .
_:631919 a rdf:Statement ;
up:attribution _:631894 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:631920 a rdf:Statement ;
up:attribution _:631895 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:226 .
_:631921 a rdf:Statement ;
up:attribution _:631896 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:631922 a rdf:Statement ;
up:attribution _:631897 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:631923 a rdf:Statement ;
up:attribution _:631898 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
_:631924 a rdf:Statement ;
up:attribution _:631899 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:631925 a rdf:Statement ;
up:attribution _:631900 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:631926 a rdf:Statement ;
up:attribution _:631901 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:631927 a rdf:Statement ;
up:attribution _:631902 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006260 .
_:631928 a rdf:Statement ;
up:attribution _:631903 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0007059 .
_:631929 a rdf:Statement ;
up:source unirule:MF_01800 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:631930 a rdf:Statement ;
up:attribution _:631904 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:631931 a rdf:Statement ;
up:source unirule:MF_01800 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:631932 a rdf:Statement ;
up:attribution _:631905 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:631933 a rdf:Statement ;
up:attribution _:631906 ;
rdf:subject ?sam22 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01800
#Rule MF_01800 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01800 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01800a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01800a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01800a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01800a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01800a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01800a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01800a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch33 faldo:location ?templateMotifSequenceMatchRegionP2252334 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2252336 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22523MF_0180029 .
?templateMotifSequenceMatchRegionP2252334 faldo:begin ?templateMotifSequenceMatchBeginP2252335 .
?templateMotifSequenceMatchBeginP2252335 faldo:position ?templateMotifSequenceMatchBeginPositionP2252330 ;
faldo:reference isoform:P22523-1 .
?templateMotifSequenceProfileAlignmentOperationP2252336 edam:has_input signature:MF_01800 ;
rdf:type edam:operation_0300 .
?targetMotifMatch37 faldo:location ?targetMotifMatchRegionMatch38 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0180040 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22523MF_0180031 .
?targetMotifMatchRegionMatch38 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0180039 .
?targetMotifMatchRegionMatchBeginMF_0180039 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0180032 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0180040 edam:has_input signature:MF_01800 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22523MF_0180029, 1, (STRLEN(?templateMotifCigarP22523MF_0180029) - STRLEN(REPLACE(?templateMotifCigarP22523MF_0180029, CONCAT('^(?:-*[^-]){', STR(((666 - ?templateMotifSequenceMatchBeginPositionP2252330) + 1)), '}'), '')))), '[a-z]', '')) AS ?step141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22523MF_0180031, 1, (STRLEN(?targetMotifMatchCigarP22523MF_0180031) - STRLEN(REPLACE(?targetMotifMatchCigarP22523MF_0180031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22523MF_0180031, 1, (STRLEN(?targetMotifMatchCigarP22523MF_0180031) - STRLEN(REPLACE(?targetMotifMatchCigarP22523MF_0180031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), '')))), '[^-]', ''))) AS ?step242) .
BIND(((?step242 + ?targetMotifMatchRegionMatchBeginPositionMF_0180032) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22523MF_0180029, 1, (STRLEN(?templateMotifCigarP22523MF_0180029) - STRLEN(REPLACE(?templateMotifCigarP22523MF_0180029, CONCAT('^(?:-*[^-]){', STR(((783 - ?templateMotifSequenceMatchBeginPositionP2252330) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22523MF_0180031, 1, (STRLEN(?targetMotifMatchCigarP22523MF_0180031) - STRLEN(REPLACE(?targetMotifMatchCigarP22523MF_0180031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22523MF_0180031, 1, (STRLEN(?targetMotifMatchCigarP22523MF_0180031) - STRLEN(REPLACE(?targetMotifMatchCigarP22523MF_0180031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) .
BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0180032) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((BOUND(?thisPositionOn13) && BOUND(?thisPositionOn14))) .
BIND(URI(CONCAT(STR(?this), '#MF_01800a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch50 faldo:location ?templateMotifSequenceMatchRegionP2252351 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2252353 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22523MF_0180046 .
?templateMotifSequenceMatchRegionP2252351 faldo:begin ?templateMotifSequenceMatchBeginP2252352 .
?templateMotifSequenceMatchBeginP2252352 faldo:position ?templateMotifSequenceMatchBeginPositionP2252347 ;
faldo:reference isoform:P22523-1 .
?templateMotifSequenceProfileAlignmentOperationP2252353 edam:has_input signature:MF_01800 ;
rdf:type edam:operation_0300 .
?targetMotifMatch54 faldo:location ?targetMotifMatchRegionMatch55 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0180057 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22523MF_0180048 .
?targetMotifMatchRegionMatch55 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0180056 .
?targetMotifMatchRegionMatchBeginMF_0180056 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0180049 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0180057 edam:has_input signature:MF_01800 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22523MF_0180046, 1, (STRLEN(?templateMotifCigarP22523MF_0180046) - STRLEN(REPLACE(?templateMotifCigarP22523MF_0180046, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP2252347) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22523MF_0180048, 1, (STRLEN(?targetMotifMatchCigarP22523MF_0180048) - STRLEN(REPLACE(?targetMotifMatchCigarP22523MF_0180048, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22523MF_0180048, 1, (STRLEN(?targetMotifMatchCigarP22523MF_0180048) - STRLEN(REPLACE(?targetMotifMatchCigarP22523MF_0180048, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0180049) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22523MF_0180046, 1, (STRLEN(?templateMotifCigarP22523MF_0180046) - STRLEN(REPLACE(?templateMotifCigarP22523MF_0180046, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionP2252347) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22523MF_0180048, 1, (STRLEN(?targetMotifMatchCigarP22523MF_0180048) - STRLEN(REPLACE(?targetMotifMatchCigarP22523MF_0180048, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22523MF_0180048, 1, (STRLEN(?targetMotifMatchCigarP22523MF_0180048) - STRLEN(REPLACE(?targetMotifMatchCigarP22523MF_0180048, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0180049) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('[AG][ARNDCQEGHILKMFPSTWYVBZJUOX]{4)GK[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01800a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:annotation ?samcc63 ;
up:sequence ?thisSequence .
?samcc63 up:range ?samccr64 ;
rdf:type up:Coiled_Coil_Annotation .
?samccr64 faldo:begin ?samccb65 ;
faldo:end ?samcce66 .
?samccb65 faldo:position ?samccbp67 ;
faldo:reference ?thisSequence .
?samcce66 faldo:position ?samccep68 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam22) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01800a28')) AS ?keyword28) .
}
"xsd:string |
