| http://purl.uniprot.org/unirules/MF_01887#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:660815 up:source unirule:MF_01887 .
_:660816 up:source unirule:MF_01887 .
_:660817 up:source unirule:MF_01887 .
_:660818 up:source unirule:MF_01887 .
_:660819 up:source unirule:MF_01887 .
_:660820 up:source unirule:MF_01887 .
_:660821 up:source unirule:MF_01887 .
_:660822 up:source unirule:MF_01887 .
_:660823 up:source unirule:MF_01887 .
_:660824 up:source unirule:MF_01887 .
_:660825 up:source unirule:MF_01887 .
_:660826 up:source unirule:MF_01887 .
_:660827 up:source unirule:MF_01887 .
_:660828 up:source unirule:MF_01887 .
_:660829 up:source unirule:MF_01887 .
_:660830 up:source unirule:MF_01887 .
_:660831 up:source unirule:MF_01887 .
_:660832 up:source unirule:MF_01887 .
_:660833 up:source unirule:MF_01887 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0006364 ,
GO:0070039 ,
keyword:489 ,
keyword:698 ,
keyword:808 ,
keyword:949 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.185' ;
up:fullName "23S rRNA (guanosine-2'-O-)-methyltransferase RlmB" ;
rdf:type up:Structured_Name .
?name1 up:fullName "23S rRNA (guanosine2251 2'-O)-methyltransferase" ;
rdf:type up:Structured_Name .
?name2 up:fullName "23S rRNA Gm2251 2'-O-methyltransferase" ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'rlmB' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Specifically methylates the ribose of guanosine 2251 in 23S rRNA.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. RlmB subfamily.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:59789 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:59789 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:59789 .
_:660834 a rdf:Statement ;
up:attribution _:660815 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:660835 a rdf:Statement ;
up:attribution _:660816 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:660836 a rdf:Statement ;
up:attribution _:660817 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:660837 a rdf:Statement ;
up:attribution _:660818 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:660838 a rdf:Statement ;
up:attribution _:660819 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:660839 a rdf:Statement ;
up:attribution _:660820 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:660840 a rdf:Statement ;
up:attribution _:660821 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:660841 a rdf:Statement ;
up:attribution _:660822 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:660842 a rdf:Statement ;
up:attribution _:660823 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:660843 a rdf:Statement ;
up:attribution _:660824 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:660844 a rdf:Statement ;
up:attribution _:660825 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:660845 a rdf:Statement ;
up:attribution _:660826 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:660846 a rdf:Statement ;
up:attribution _:660827 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:660847 a rdf:Statement ;
up:attribution _:660828 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070039 .
_:660848 a rdf:Statement ;
up:attribution _:660829 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006364 .
_:660849 a rdf:Statement ;
up:attribution _:660830 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:660850 a rdf:Statement ;
up:source unirule:MF_01887 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:660851 a rdf:Statement ;
up:attribution _:660831 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:660852 a rdf:Statement ;
up:source unirule:MF_01887 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:660853 a rdf:Statement ;
up:attribution _:660832 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:660854 a rdf:Statement ;
up:source unirule:MF_01887 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:660855 a rdf:Statement ;
up:attribution _:660833 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01887
#Rule MF_01887 Created by:? on:2010-11-08 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01887 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01887a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01887a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01887a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01887a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01887a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01887a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01887a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch36 faldo:location ?templateMotifSequenceMatchRegionP6317737 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6317739 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP63177MF_0188732 .
?templateMotifSequenceMatchRegionP6317737 faldo:begin ?templateMotifSequenceMatchBeginP6317738 .
?templateMotifSequenceMatchBeginP6317738 faldo:position ?templateMotifSequenceMatchBeginPositionP6317733 ;
faldo:reference isoform:P63177-1 .
?templateMotifSequenceProfileAlignmentOperationP6317739 edam:has_input signature:MF_01887 ;
rdf:type edam:operation_0300 .
?targetMotifMatch40 faldo:location ?targetMotifMatchRegionMatch41 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0188743 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP63177MF_0188734 .
?targetMotifMatchRegionMatch41 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0188742 .
?targetMotifMatchRegionMatchBeginMF_0188742 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0188735 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0188743 edam:has_input signature:MF_01887 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP63177MF_0188732, 1, (STRLEN(?templateMotifCigarP63177MF_0188732) - STRLEN(REPLACE(?templateMotifCigarP63177MF_0188732, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionP6317733) + 1)), '}'), '')))), '[a-z]', '')) AS ?step144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP63177MF_0188734, 1, (STRLEN(?targetMotifMatchCigarP63177MF_0188734) - STRLEN(REPLACE(?targetMotifMatchCigarP63177MF_0188734, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP63177MF_0188734, 1, (STRLEN(?targetMotifMatchCigarP63177MF_0188734) - STRLEN(REPLACE(?targetMotifMatchCigarP63177MF_0188734, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), '')))), '[^-]', ''))) AS ?step245) .
BIND(((?step245 + ?targetMotifMatchRegionMatchBeginPositionMF_0188735) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01887a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch51 faldo:location ?templateMotifSequenceMatchRegionP6317752 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6317754 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP63177MF_0188747 .
?templateMotifSequenceMatchRegionP6317752 faldo:begin ?templateMotifSequenceMatchBeginP6317753 .
?templateMotifSequenceMatchBeginP6317753 faldo:position ?templateMotifSequenceMatchBeginPositionP6317748 ;
faldo:reference isoform:P63177-1 .
?templateMotifSequenceProfileAlignmentOperationP6317754 edam:has_input signature:MF_01887 ;
rdf:type edam:operation_0300 .
?targetMotifMatch55 faldo:location ?targetMotifMatchRegionMatch56 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0188758 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP63177MF_0188749 .
?targetMotifMatchRegionMatch56 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0188757 .
?targetMotifMatchRegionMatchBeginMF_0188757 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0188750 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0188758 edam:has_input signature:MF_01887 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP63177MF_0188747, 1, (STRLEN(?templateMotifCigarP63177MF_0188747) - STRLEN(REPLACE(?templateMotifCigarP63177MF_0188747, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionP6317748) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP63177MF_0188749, 1, (STRLEN(?targetMotifMatchCigarP63177MF_0188749) - STRLEN(REPLACE(?targetMotifMatchCigarP63177MF_0188749, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP63177MF_0188749, 1, (STRLEN(?targetMotifMatchCigarP63177MF_0188749) - STRLEN(REPLACE(?targetMotifMatchCigarP63177MF_0188749, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0188750) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER (REGEX('[IL]', SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01887a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionP6317767 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6317769 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP63177MF_0188762 .
?templateMotifSequenceMatchRegionP6317767 faldo:begin ?templateMotifSequenceMatchBeginP6317768 .
?templateMotifSequenceMatchBeginP6317768 faldo:position ?templateMotifSequenceMatchBeginPositionP6317763 ;
faldo:reference isoform:P63177-1 .
?templateMotifSequenceProfileAlignmentOperationP6317769 edam:has_input signature:MF_01887 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0188773 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP63177MF_0188764 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0188772 .
?targetMotifMatchRegionMatchBeginMF_0188772 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0188765 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0188773 edam:has_input signature:MF_01887 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP63177MF_0188762, 1, (STRLEN(?templateMotifCigarP63177MF_0188762) - STRLEN(REPLACE(?templateMotifCigarP63177MF_0188762, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionP6317763) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP63177MF_0188764, 1, (STRLEN(?targetMotifMatchCigarP63177MF_0188764) - STRLEN(REPLACE(?targetMotifMatchCigarP63177MF_0188764, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP63177MF_0188764, 1, (STRLEN(?targetMotifMatchCigarP63177MF_0188764) - STRLEN(REPLACE(?targetMotifMatchCigarP63177MF_0188764, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0188765) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER (REGEX('[LM]', SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01887a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case10) .
}
}
"xsd:string |
