| http://purl.uniprot.org/unirules/MF_01891#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:662040 up:source unirule:MF_01891 .
_:662041 up:source unirule:MF_01891 .
_:662042 up:source unirule:MF_01891 .
_:662043 up:source unirule:MF_01891 .
_:662044 up:source unirule:MF_01891 .
_:662045 up:source unirule:MF_01891 .
_:662046 up:source unirule:MF_01891 .
_:662047 up:source unirule:MF_01891 .
_:662048 up:source unirule:MF_01891 .
_:662049 up:source unirule:MF_01891 .
_:662050 up:source unirule:MF_01891 .
_:662051 up:source unirule:MF_01891 .
_:662052 up:source unirule:MF_01891 .
_:662053 up:source unirule:MF_01891 .
_:662054 up:source unirule:MF_01891 .
_:662055 up:source unirule:MF_01891 .
_:662056 up:source unirule:MF_01891 .
_:662057 up:source unirule:MF_01891 .
_:662058 up:source unirule:MF_01891 .
_:662059 up:source unirule:MF_01891 .
_:662060 up:source unirule:MF_01891 .
_:662061 up:source unirule:MF_01891 .
_:662062 up:source unirule:MF_01891 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0003677 ,
GO:0005737 ,
GO:0006355 ,
GO:1902208 ,
keyword:1005 ,
keyword:10 ,
keyword:238 ,
keyword:804 ,
keyword:805 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Flagellar transcriptional regulator FlhC' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'flhC' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Heterohexamer composed of two FlhC and four FlhD subunits. Each FlhC binds a FlhD dimer, forming a heterotrimer, and a hexamer assembles by dimerization of two heterotrimers.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the FlhC family.' .
?case7 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 ,
?annotation27 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:29105 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:29105 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:29105 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:29105 .
_:662063 a rdf:Statement ;
up:attribution _:662040 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:662064 a rdf:Statement ;
up:attribution _:662041 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:662065 a rdf:Statement ;
up:attribution _:662042 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:662066 a rdf:Statement ;
up:attribution _:662043 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:662067 a rdf:Statement ;
up:attribution _:662044 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:662068 a rdf:Statement ;
up:attribution _:662045 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:662069 a rdf:Statement ;
up:attribution _:662046 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:10 .
_:662070 a rdf:Statement ;
up:attribution _:662047 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1005 .
_:662071 a rdf:Statement ;
up:attribution _:662048 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:662072 a rdf:Statement ;
up:attribution _:662049 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:662073 a rdf:Statement ;
up:attribution _:662050 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:662074 a rdf:Statement ;
up:attribution _:662051 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:662075 a rdf:Statement ;
up:attribution _:662052 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:662076 a rdf:Statement ;
up:attribution _:662053 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006355 .
_:662077 a rdf:Statement ;
up:attribution _:662054 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1902208 .
_:662078 a rdf:Statement ;
up:attribution _:662055 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:662079 a rdf:Statement ;
up:attribution _:662056 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:662080 a rdf:Statement ;
up:attribution _:662057 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:662081 a rdf:Statement ;
up:attribution _:662058 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:662082 a rdf:Statement ;
up:source unirule:MF_01891 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:662083 a rdf:Statement ;
up:attribution _:662059 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:662084 a rdf:Statement ;
up:source unirule:MF_01891 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:662085 a rdf:Statement ;
up:attribution _:662060 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:662086 a rdf:Statement ;
up:source unirule:MF_01891 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:662087 a rdf:Statement ;
up:attribution _:662061 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:662088 a rdf:Statement ;
up:source unirule:MF_01891 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:662089 a rdf:Statement ;
up:attribution _:662062 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01891
#Rule MF_01891 Created by:? on:2011-02-14 Modified by:Edouard de Castro on:2023-01-26
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01891 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01891a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01891a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01891a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01891a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01891a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionP0ABY738 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABY740 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABY7MF_0189133 .
?templateMotifSequenceMatchRegionP0ABY738 faldo:begin ?templateMotifSequenceMatchBeginP0ABY739 .
?templateMotifSequenceMatchBeginP0ABY739 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABY734 ;
faldo:reference isoform:P0ABY7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABY740 edam:has_input signature:MF_01891 ;
rdf:type edam:operation_0300 .
?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0189144 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABY7MF_0189135 .
?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0189143 .
?targetMotifMatchRegionMatchBeginMF_0189143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0189136 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0189144 edam:has_input signature:MF_01891 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABY7MF_0189133, 1, (STRLEN(?templateMotifCigarP0ABY7MF_0189133) - STRLEN(REPLACE(?templateMotifCigarP0ABY7MF_0189133, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP0ABY734) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABY7MF_0189135, 1, (STRLEN(?targetMotifMatchCigarP0ABY7MF_0189135) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABY7MF_0189135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABY7MF_0189135, 1, (STRLEN(?targetMotifMatchCigarP0ABY7MF_0189135) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABY7MF_0189135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0189136) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABY7MF_0189133, 1, (STRLEN(?templateMotifCigarP0ABY7MF_0189133) - STRLEN(REPLACE(?templateMotifCigarP0ABY7MF_0189133, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP0ABY734) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABY7MF_0189135, 1, (STRLEN(?targetMotifMatchCigarP0ABY7MF_0189135) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABY7MF_0189135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABY7MF_0189135, 1, (STRLEN(?targetMotifMatchCigarP0ABY7MF_0189135) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABY7MF_0189135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0189136) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABY7MF_0189133, 1, (STRLEN(?templateMotifCigarP0ABY7MF_0189133) - STRLEN(REPLACE(?templateMotifCigarP0ABY7MF_0189133, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP0ABY734) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABY7MF_0189135, 1, (STRLEN(?targetMotifMatchCigarP0ABY7MF_0189135) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABY7MF_0189135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABY7MF_0189135, 1, (STRLEN(?targetMotifMatchCigarP0ABY7MF_0189135) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABY7MF_0189135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0189136) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABY7MF_0189133, 1, (STRLEN(?templateMotifCigarP0ABY7MF_0189133) - STRLEN(REPLACE(?templateMotifCigarP0ABY7MF_0189133, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionP0ABY734) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABY7MF_0189135, 1, (STRLEN(?targetMotifMatchCigarP0ABY7MF_0189135) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABY7MF_0189135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABY7MF_0189135, 1, (STRLEN(?targetMotifMatchCigarP0ABY7MF_0189135) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABY7MF_0189135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0189136) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag57) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag57, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
