| http://purl.uniprot.org/unirules/MF_01918#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:670345 up:source unirule:MF_01918 .
_:670346 up:source unirule:MF_01918 .
_:670347 up:source unirule:MF_01918 .
_:670348 up:source unirule:MF_01918 .
_:670349 up:source unirule:MF_01918 .
_:670350 up:source unirule:MF_01918 .
_:670351 up:source unirule:MF_01918 .
_:670352 up:source unirule:MF_01918 .
_:670353 up:source unirule:MF_01918 .
_:670354 up:source unirule:MF_01918 .
_:670355 up:source unirule:MF_01918 .
_:670356 up:source unirule:MF_01918 .
_:670357 up:source unirule:MF_01918 .
_:670358 up:source unirule:MF_01918 .
_:670359 up:source unirule:MF_01918 .
_:670360 up:source unirule:MF_01918 .
_:670361 up:source unirule:MF_01918 .
_:670362 up:source unirule:MF_01918 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0008654 ,
GO:0016780 ,
keyword:1208 ,
keyword:443 ,
keyword:444 ,
keyword:594 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.8.-' ;
up:fullName 'Cardiolipin synthase C' ;
up:shortName 'CL synthase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'clsC' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the synthesis of cardiolipin (CL) (diphosphatidylglycerol) from phosphatidylglycerol (PG) and phosphatidylethanolamine (PE).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the phospholipase D family. Cardiolipin synthase subfamily. ClsC sub-subfamily.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
rdf:type up:Active_Site_Annotation .
?pfsb8 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Active_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Active_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Active_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Active_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Active_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
_:670363 a rdf:Statement ;
up:attribution _:670345 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:670364 a rdf:Statement ;
up:attribution _:670346 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:670365 a rdf:Statement ;
up:attribution _:670347 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:670366 a rdf:Statement ;
up:attribution _:670348 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:670367 a rdf:Statement ;
up:attribution _:670349 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:670368 a rdf:Statement ;
up:attribution _:670350 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:444 .
_:670369 a rdf:Statement ;
up:attribution _:670351 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:670370 a rdf:Statement ;
up:attribution _:670352 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:594 .
_:670371 a rdf:Statement ;
up:attribution _:670353 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1208 .
_:670372 a rdf:Statement ;
up:attribution _:670354 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:670373 a rdf:Statement ;
up:attribution _:670355 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016780 .
_:670374 a rdf:Statement ;
up:attribution _:670356 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008654 .
_:670375 a rdf:Statement ;
up:source unirule:MF_01918 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:670376 a rdf:Statement ;
up:attribution _:670357 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:670377 a rdf:Statement ;
up:source unirule:MF_01918 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:670378 a rdf:Statement ;
up:attribution _:670358 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:670379 a rdf:Statement ;
up:source unirule:MF_01918 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:670380 a rdf:Statement ;
up:attribution _:670359 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:670381 a rdf:Statement ;
up:source unirule:MF_01918 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:670382 a rdf:Statement ;
up:attribution _:670360 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:670383 a rdf:Statement ;
up:source unirule:MF_01918 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:670384 a rdf:Statement ;
up:attribution _:670361 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:670385 a rdf:Statement ;
up:source unirule:MF_01918 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:670386 a rdf:Statement ;
up:attribution _:670362 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01918
#Rule MF_01918 Created by:? on:2014-04-16 Modified by:Elisabeth Coudert on:2024-08-27
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01918 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01918a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01918a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01918a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01918a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch46 faldo:location ?templateMotifSequenceMatchRegionP7591947 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7591949 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75919MF_0191842 .
?templateMotifSequenceMatchRegionP7591947 faldo:begin ?templateMotifSequenceMatchBeginP7591948 .
?templateMotifSequenceMatchBeginP7591948 faldo:position ?templateMotifSequenceMatchBeginPositionP7591943 ;
faldo:reference isoform:P75919-1 .
?templateMotifSequenceProfileAlignmentOperationP7591949 edam:has_input signature:MF_01918 ;
rdf:type edam:operation_0300 .
?targetMotifMatch50 faldo:location ?targetMotifMatchRegionMatch51 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0191853 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75919MF_0191844 .
?targetMotifMatchRegionMatch51 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0191852 .
?targetMotifMatchRegionMatchBeginMF_0191852 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0191845 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0191853 edam:has_input signature:MF_01918 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75919MF_0191842, 1, (STRLEN(?templateMotifCigarP75919MF_0191842) - STRLEN(REPLACE(?templateMotifCigarP75919MF_0191842, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP7591943) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75919MF_0191844, 1, (STRLEN(?targetMotifMatchCigarP75919MF_0191844) - STRLEN(REPLACE(?targetMotifMatchCigarP75919MF_0191844, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75919MF_0191844, 1, (STRLEN(?targetMotifMatchCigarP75919MF_0191844) - STRLEN(REPLACE(?targetMotifMatchCigarP75919MF_0191844, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0191845) - 1) AS ?thisPositionOn10) .
BIND(?thisPositionOn10 AS ?thisPositionOn11) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn10, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01918a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionP7591962 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7591964 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75919MF_0191857 .
?templateMotifSequenceMatchRegionP7591962 faldo:begin ?templateMotifSequenceMatchBeginP7591963 .
?templateMotifSequenceMatchBeginP7591963 faldo:position ?templateMotifSequenceMatchBeginPositionP7591958 ;
faldo:reference isoform:P75919-1 .
?templateMotifSequenceProfileAlignmentOperationP7591964 edam:has_input signature:MF_01918 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0191868 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75919MF_0191859 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0191867 .
?targetMotifMatchRegionMatchBeginMF_0191867 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0191860 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0191868 edam:has_input signature:MF_01918 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75919MF_0191857, 1, (STRLEN(?templateMotifCigarP75919MF_0191857) - STRLEN(REPLACE(?templateMotifCigarP75919MF_0191857, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP7591958) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75919MF_0191859, 1, (STRLEN(?targetMotifMatchCigarP75919MF_0191859) - STRLEN(REPLACE(?targetMotifMatchCigarP75919MF_0191859, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75919MF_0191859, 1, (STRLEN(?targetMotifMatchCigarP75919MF_0191859) - STRLEN(REPLACE(?targetMotifMatchCigarP75919MF_0191859, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0191860) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01918a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionP7591977 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7591979 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75919MF_0191872 .
?templateMotifSequenceMatchRegionP7591977 faldo:begin ?templateMotifSequenceMatchBeginP7591978 .
?templateMotifSequenceMatchBeginP7591978 faldo:position ?templateMotifSequenceMatchBeginPositionP7591973 ;
faldo:reference isoform:P75919-1 .
?templateMotifSequenceProfileAlignmentOperationP7591979 edam:has_input signature:MF_01918 ;
rdf:type edam:operation_0300 .
?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0191883 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75919MF_0191874 .
?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0191882 .
?targetMotifMatchRegionMatchBeginMF_0191882 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0191875 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0191883 edam:has_input signature:MF_01918 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75919MF_0191872, 1, (STRLEN(?templateMotifCigarP75919MF_0191872) - STRLEN(REPLACE(?templateMotifCigarP75919MF_0191872, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP7591973) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75919MF_0191874, 1, (STRLEN(?targetMotifMatchCigarP75919MF_0191874) - STRLEN(REPLACE(?targetMotifMatchCigarP75919MF_0191874, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75919MF_0191874, 1, (STRLEN(?targetMotifMatchCigarP75919MF_0191874) - STRLEN(REPLACE(?targetMotifMatchCigarP75919MF_0191874, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0191875) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01918a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionP7591992 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7591994 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75919MF_0191887 .
?templateMotifSequenceMatchRegionP7591992 faldo:begin ?templateMotifSequenceMatchBeginP7591993 .
?templateMotifSequenceMatchBeginP7591993 faldo:position ?templateMotifSequenceMatchBeginPositionP7591988 ;
faldo:reference isoform:P75919-1 .
?templateMotifSequenceProfileAlignmentOperationP7591994 edam:has_input signature:MF_01918 ;
rdf:type edam:operation_0300 .
?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0191898 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75919MF_0191889 .
?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0191897 .
?targetMotifMatchRegionMatchBeginMF_0191897 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0191890 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0191898 edam:has_input signature:MF_01918 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75919MF_0191887, 1, (STRLEN(?templateMotifCigarP75919MF_0191887) - STRLEN(REPLACE(?templateMotifCigarP75919MF_0191887, CONCAT('^(?:-*[^-]){', STR(((369 - ?templateMotifSequenceMatchBeginPositionP7591988) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75919MF_0191889, 1, (STRLEN(?targetMotifMatchCigarP75919MF_0191889) - STRLEN(REPLACE(?targetMotifMatchCigarP75919MF_0191889, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75919MF_0191889, 1, (STRLEN(?targetMotifMatchCigarP75919MF_0191889) - STRLEN(REPLACE(?targetMotifMatchCigarP75919MF_0191889, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0191890) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01918a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP75919107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP75919109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75919MF_01918102 .
?templateMotifSequenceMatchRegionP75919107 faldo:begin ?templateMotifSequenceMatchBeginP75919108 .
?templateMotifSequenceMatchBeginP75919108 faldo:position ?templateMotifSequenceMatchBeginPositionP75919103 ;
faldo:reference isoform:P75919-1 .
?templateMotifSequenceProfileAlignmentOperationP75919109 edam:has_input signature:MF_01918 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01918113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75919MF_01918104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01918112 .
?targetMotifMatchRegionMatchBeginMF_01918112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01918105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01918113 edam:has_input signature:MF_01918 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75919MF_01918102, 1, (STRLEN(?templateMotifCigarP75919MF_01918102) - STRLEN(REPLACE(?templateMotifCigarP75919MF_01918102, CONCAT('^(?:-*[^-]){', STR(((371 - ?templateMotifSequenceMatchBeginPositionP75919103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75919MF_01918104, 1, (STRLEN(?targetMotifMatchCigarP75919MF_01918104) - STRLEN(REPLACE(?targetMotifMatchCigarP75919MF_01918104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75919MF_01918104, 1, (STRLEN(?targetMotifMatchCigarP75919MF_01918104) - STRLEN(REPLACE(?targetMotifMatchCigarP75919MF_01918104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01918105) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01918a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP75919122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP75919124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75919MF_01918117 .
?templateMotifSequenceMatchRegionP75919122 faldo:begin ?templateMotifSequenceMatchBeginP75919123 .
?templateMotifSequenceMatchBeginP75919123 faldo:position ?templateMotifSequenceMatchBeginPositionP75919118 ;
faldo:reference isoform:P75919-1 .
?templateMotifSequenceProfileAlignmentOperationP75919124 edam:has_input signature:MF_01918 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01918128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75919MF_01918119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01918127 .
?targetMotifMatchRegionMatchBeginMF_01918127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01918120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01918128 edam:has_input signature:MF_01918 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75919MF_01918117, 1, (STRLEN(?templateMotifCigarP75919MF_01918117) - STRLEN(REPLACE(?templateMotifCigarP75919MF_01918117, CONCAT('^(?:-*[^-]){', STR(((376 - ?templateMotifSequenceMatchBeginPositionP75919118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75919MF_01918119, 1, (STRLEN(?targetMotifMatchCigarP75919MF_01918119) - STRLEN(REPLACE(?targetMotifMatchCigarP75919MF_01918119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75919MF_01918119, 1, (STRLEN(?targetMotifMatchCigarP75919MF_01918119) - STRLEN(REPLACE(?targetMotifMatchCigarP75919MF_01918119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01918120) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01918a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
}
"xsd:string |
