| http://purl.uniprot.org/unirules/MF_01924#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:672911 up:source unirule:MF_01924 .
_:672912 up:source unirule:MF_01924 .
_:672913 up:source unirule:MF_01924 .
_:672914 up:source unirule:MF_01924 .
_:672915 up:source unirule:MF_01924 .
_:672916 up:source unirule:MF_01924 .
_:672917 up:source unirule:MF_01924 .
_:672918 up:source unirule:MF_01924 .
_:672919 up:source unirule:MF_01924 .
_:672920 up:source unirule:MF_01924 .
_:672921 up:source unirule:MF_01924 .
_:672922 up:source unirule:MF_01924 .
_:672923 up:source unirule:MF_01924 .
_:672924 up:source unirule:MF_01924 .
_:672925 up:source unirule:MF_01924 .
_:672926 up:source unirule:MF_01924 .
_:672927 up:source unirule:MF_01924 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0016805 ,
keyword:224 ,
keyword:378 ,
keyword:482 ,
keyword:645 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.4.13.22' ;
up:fullName 'D-alanyl-D-alanine dipeptidase' ;
up:shortName 'D-Ala-D-Ala dipeptidase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase M15D family.' .
?case5 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs7 up:annotation ?annotation8 ,
?annotation14 ,
?annotation20 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:29105 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:29105 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:29105 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
_:672928 a rdf:Statement ;
up:attribution _:672911 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:672929 a rdf:Statement ;
up:attribution _:672912 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:672930 a rdf:Statement ;
up:attribution _:672913 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:672931 a rdf:Statement ;
up:attribution _:672914 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:672932 a rdf:Statement ;
up:attribution _:672915 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:224 .
_:672933 a rdf:Statement ;
up:attribution _:672916 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:672934 a rdf:Statement ;
up:attribution _:672917 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:482 .
_:672935 a rdf:Statement ;
up:attribution _:672918 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:645 .
_:672936 a rdf:Statement ;
up:attribution _:672919 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016805 .
_:672937 a rdf:Statement ;
up:attribution _:672920 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:672938 a rdf:Statement ;
up:attribution _:672921 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:672939 a rdf:Statement ;
up:attribution _:672922 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:672940 a rdf:Statement ;
up:source unirule:MF_01924 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:672941 a rdf:Statement ;
up:attribution _:672923 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:672942 a rdf:Statement ;
up:source unirule:MF_01924 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:672943 a rdf:Statement ;
up:attribution _:672924 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:672944 a rdf:Statement ;
up:source unirule:MF_01924 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:672945 a rdf:Statement ;
up:attribution _:672925 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:672946 a rdf:Statement ;
up:source unirule:MF_01924 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:672947 a rdf:Statement ;
up:attribution _:672926 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:672948 a rdf:Statement ;
up:source unirule:MF_01924 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:672949 a rdf:Statement ;
up:attribution _:672927 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01924
#Rule MF_01924 Created by:? on:2014-06-13 Modified by:Edouard de Castro on:2023-01-26
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01924 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01924a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01924a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01924a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01924a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch42 faldo:location ?templateMotifSequenceMatchRegionQ0624143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0624145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ06241MF_0192438 .
?templateMotifSequenceMatchRegionQ0624143 faldo:begin ?templateMotifSequenceMatchBeginQ0624144 .
?templateMotifSequenceMatchBeginQ0624144 faldo:position ?templateMotifSequenceMatchBeginPositionQ0624139 ;
faldo:reference isoform:Q06241-1 .
?templateMotifSequenceProfileAlignmentOperationQ0624145 edam:has_input signature:MF_01924 ;
rdf:type edam:operation_0300 .
?targetMotifMatch46 faldo:location ?targetMotifMatchRegionMatch47 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0192449 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ06241MF_0192440 .
?targetMotifMatchRegionMatch47 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0192448 .
?targetMotifMatchRegionMatchBeginMF_0192448 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0192441 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0192449 edam:has_input signature:MF_01924 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ06241MF_0192438, 1, (STRLEN(?templateMotifCigarQ06241MF_0192438) - STRLEN(REPLACE(?templateMotifCigarQ06241MF_0192438, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionQ0624139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ06241MF_0192440, 1, (STRLEN(?targetMotifMatchCigarQ06241MF_0192440) - STRLEN(REPLACE(?targetMotifMatchCigarQ06241MF_0192440, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ06241MF_0192440, 1, (STRLEN(?targetMotifMatchCigarQ06241MF_0192440) - STRLEN(REPLACE(?targetMotifMatchCigarQ06241MF_0192440, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0192441) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ06241MF_0192438, 1, (STRLEN(?templateMotifCigarQ06241MF_0192438) - STRLEN(REPLACE(?templateMotifCigarQ06241MF_0192438, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionQ0624139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ06241MF_0192440, 1, (STRLEN(?targetMotifMatchCigarQ06241MF_0192440) - STRLEN(REPLACE(?targetMotifMatchCigarQ06241MF_0192440, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ06241MF_0192440, 1, (STRLEN(?targetMotifMatchCigarQ06241MF_0192440) - STRLEN(REPLACE(?targetMotifMatchCigarQ06241MF_0192440, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0192441) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ06241MF_0192438, 1, (STRLEN(?templateMotifCigarQ06241MF_0192438) - STRLEN(REPLACE(?templateMotifCigarQ06241MF_0192438, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionQ0624139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ06241MF_0192440, 1, (STRLEN(?targetMotifMatchCigarQ06241MF_0192440) - STRLEN(REPLACE(?targetMotifMatchCigarQ06241MF_0192440, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ06241MF_0192440, 1, (STRLEN(?targetMotifMatchCigarQ06241MF_0192440) - STRLEN(REPLACE(?targetMotifMatchCigarQ06241MF_0192440, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0192441) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'H')) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionQ0624164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0624166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ06241MF_0192459 .
?templateMotifSequenceMatchRegionQ0624164 faldo:begin ?templateMotifSequenceMatchBeginQ0624165 .
?templateMotifSequenceMatchBeginQ0624165 faldo:position ?templateMotifSequenceMatchBeginPositionQ0624160 ;
faldo:reference isoform:Q06241-1 .
?templateMotifSequenceProfileAlignmentOperationQ0624166 edam:has_input signature:MF_01924 ;
rdf:type edam:operation_0300 .
?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0192470 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ06241MF_0192461 .
?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0192469 .
?targetMotifMatchRegionMatchBeginMF_0192469 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0192462 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0192470 edam:has_input signature:MF_01924 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ06241MF_0192459, 1, (STRLEN(?templateMotifCigarQ06241MF_0192459) - STRLEN(REPLACE(?templateMotifCigarQ06241MF_0192459, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionQ0624160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ06241MF_0192461, 1, (STRLEN(?targetMotifMatchCigarQ06241MF_0192461) - STRLEN(REPLACE(?targetMotifMatchCigarQ06241MF_0192461, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ06241MF_0192461, 1, (STRLEN(?targetMotifMatchCigarQ06241MF_0192461) - STRLEN(REPLACE(?targetMotifMatchCigarQ06241MF_0192461, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0192462) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs2t73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01924a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionQ0624179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0624181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ06241MF_0192474 .
?templateMotifSequenceMatchRegionQ0624179 faldo:begin ?templateMotifSequenceMatchBeginQ0624180 .
?templateMotifSequenceMatchBeginQ0624180 faldo:position ?templateMotifSequenceMatchBeginPositionQ0624175 ;
faldo:reference isoform:Q06241-1 .
?templateMotifSequenceProfileAlignmentOperationQ0624181 edam:has_input signature:MF_01924 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0192485 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ06241MF_0192476 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0192484 .
?targetMotifMatchRegionMatchBeginMF_0192484 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0192477 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0192485 edam:has_input signature:MF_01924 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ06241MF_0192474, 1, (STRLEN(?templateMotifCigarQ06241MF_0192474) - STRLEN(REPLACE(?templateMotifCigarQ06241MF_0192474, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionQ0624175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ06241MF_0192476, 1, (STRLEN(?targetMotifMatchCigarQ06241MF_0192476) - STRLEN(REPLACE(?targetMotifMatchCigarQ06241MF_0192476, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ06241MF_0192476, 1, (STRLEN(?targetMotifMatchCigarQ06241MF_0192476) - STRLEN(REPLACE(?targetMotifMatchCigarQ06241MF_0192476, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0192477) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs2t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01924a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag89) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag89, ?UNBOUND_VARIABLE) AS ?case5) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(?this AS ?case6) .
}
}
"xsd:string |
