| http://purl.uniprot.org/unirules/MF_01936#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:677346 up:source unirule:MF_01936 .
_:677347 up:source unirule:MF_01936 .
_:677348 up:source unirule:MF_01936 .
_:677349 up:source unirule:MF_01936 .
_:677350 up:source unirule:MF_01936 .
_:677351 up:source unirule:MF_01936 .
_:677352 up:source unirule:MF_01936 .
_:677353 up:source unirule:MF_01936 .
_:677354 up:source unirule:MF_01936 .
_:677355 up:source unirule:MF_01936 .
_:677356 up:source unirule:MF_01936 .
_:677357 up:source unirule:MF_01936 .
_:677358 up:source unirule:MF_01936 .
_:677359 up:source unirule:MF_01936 .
_:677360 up:source unirule:MF_01936 .
_:677361 up:source unirule:MF_01936 .
_:677362 up:source unirule:MF_01936 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0009234 ,
GO:0016790 ,
keyword:378 ,
keyword:474 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.2.28' ;
up:fullName '1,4-dihydroxy-2-naphthoyl-CoA hydrolase' ;
up:shortName 'DHNA-CoA hydrolase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'DHNA-CoA thioesterase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'menI' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the hydrolysis of 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) to 1,4-dihydroxy-2-naphthoate (DHNA).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Quinol/quinone metabolism; 1,4-dihydroxy-2-naphthoate biosynthesis; 1,4-dihydroxy-2-naphthoate from chorismate: step 7/7.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Quinol/quinone metabolism; menaquinone biosynthesis.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer. Dimer of dimers.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the thioesterase PaaI family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf ?molecule15 .
?molecule15 rdfs:label 'substrate' .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf ?molecule23 .
?molecule23 rdfs:label 'substrate' .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile or proton acceptor' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf ?molecule37 .
?molecule37 rdfs:label 'substrate' .
_:677363 a rdf:Statement ;
up:attribution _:677346 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:677364 a rdf:Statement ;
up:attribution _:677347 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:677365 a rdf:Statement ;
up:attribution _:677348 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:677366 a rdf:Statement ;
up:attribution _:677349 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:677367 a rdf:Statement ;
up:attribution _:677350 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:677368 a rdf:Statement ;
up:attribution _:677351 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:677369 a rdf:Statement ;
up:attribution _:677352 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:677370 a rdf:Statement ;
up:attribution _:677353 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:677371 a rdf:Statement ;
up:attribution _:677354 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:677372 a rdf:Statement ;
up:attribution _:677355 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:677373 a rdf:Statement ;
up:attribution _:677356 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:474 .
_:677374 a rdf:Statement ;
up:attribution _:677357 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016790 .
_:677375 a rdf:Statement ;
up:attribution _:677358 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009234 .
_:677376 a rdf:Statement ;
up:source unirule:MF_01936 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:677377 a rdf:Statement ;
up:attribution _:677359 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:677378 a rdf:Statement ;
up:source unirule:MF_01936 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:677379 a rdf:Statement ;
up:attribution _:677360 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:677380 a rdf:Statement ;
up:source unirule:MF_01936 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:677381 a rdf:Statement ;
up:attribution _:677361 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:677382 a rdf:Statement ;
up:source unirule:MF_01936 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:677383 a rdf:Statement ;
up:attribution _:677362 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01936
#Rule MF_01936 Created by:? on:2014-10-23 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01936 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01936a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01936a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01936a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01936a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01936a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01936a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01936a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01936a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionP7778145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7778147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77781MF_0193640 .
?templateMotifSequenceMatchRegionP7778145 faldo:begin ?templateMotifSequenceMatchBeginP7778146 .
?templateMotifSequenceMatchBeginP7778146 faldo:position ?templateMotifSequenceMatchBeginPositionP7778141 ;
faldo:reference isoform:P77781-1 .
?templateMotifSequenceProfileAlignmentOperationP7778147 edam:has_input signature:MF_01936 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0193651 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77781MF_0193642 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0193650 .
?targetMotifMatchRegionMatchBeginMF_0193650 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0193643 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0193651 edam:has_input signature:MF_01936 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77781MF_0193640, 1, (STRLEN(?templateMotifCigarP77781MF_0193640) - STRLEN(REPLACE(?templateMotifCigarP77781MF_0193640, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP7778141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77781MF_0193642, 1, (STRLEN(?targetMotifMatchCigarP77781MF_0193642) - STRLEN(REPLACE(?targetMotifMatchCigarP77781MF_0193642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77781MF_0193642, 1, (STRLEN(?targetMotifMatchCigarP77781MF_0193642) - STRLEN(REPLACE(?targetMotifMatchCigarP77781MF_0193642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0193643) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77781MF_0193640, 1, (STRLEN(?templateMotifCigarP77781MF_0193640) - STRLEN(REPLACE(?templateMotifCigarP77781MF_0193640, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP7778141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77781MF_0193642, 1, (STRLEN(?targetMotifMatchCigarP77781MF_0193642) - STRLEN(REPLACE(?targetMotifMatchCigarP77781MF_0193642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77781MF_0193642, 1, (STRLEN(?targetMotifMatchCigarP77781MF_0193642) - STRLEN(REPLACE(?targetMotifMatchCigarP77781MF_0193642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0193643) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse13) .
FILTER (REGEX('H[VIL][RK][SA]', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01936a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionP7778162 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7778164 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77781MF_0193657 .
?templateMotifSequenceMatchRegionP7778162 faldo:begin ?templateMotifSequenceMatchBeginP7778163 .
?templateMotifSequenceMatchBeginP7778163 faldo:position ?templateMotifSequenceMatchBeginPositionP7778158 ;
faldo:reference isoform:P77781-1 .
?templateMotifSequenceProfileAlignmentOperationP7778164 edam:has_input signature:MF_01936 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0193668 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77781MF_0193659 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0193667 .
?targetMotifMatchRegionMatchBeginMF_0193667 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0193660 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0193668 edam:has_input signature:MF_01936 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77781MF_0193657, 1, (STRLEN(?templateMotifCigarP77781MF_0193657) - STRLEN(REPLACE(?templateMotifCigarP77781MF_0193657, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionP7778158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77781MF_0193659, 1, (STRLEN(?targetMotifMatchCigarP77781MF_0193659) - STRLEN(REPLACE(?targetMotifMatchCigarP77781MF_0193659, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77781MF_0193659, 1, (STRLEN(?targetMotifMatchCigarP77781MF_0193659) - STRLEN(REPLACE(?targetMotifMatchCigarP77781MF_0193659, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0193660) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77781MF_0193657, 1, (STRLEN(?templateMotifCigarP77781MF_0193657) - STRLEN(REPLACE(?templateMotifCigarP77781MF_0193657, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionP7778158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77781MF_0193659, 1, (STRLEN(?targetMotifMatchCigarP77781MF_0193659) - STRLEN(REPLACE(?targetMotifMatchCigarP77781MF_0193659, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77781MF_0193659, 1, (STRLEN(?targetMotifMatchCigarP77781MF_0193659) - STRLEN(REPLACE(?targetMotifMatchCigarP77781MF_0193659, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0193660) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse21) .
FILTER (REGEX('H[VL]G[SAT]RH', SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01936a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionP7778179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7778181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77781MF_0193674 .
?templateMotifSequenceMatchRegionP7778179 faldo:begin ?templateMotifSequenceMatchBeginP7778180 .
?templateMotifSequenceMatchBeginP7778180 faldo:position ?templateMotifSequenceMatchBeginPositionP7778175 ;
faldo:reference isoform:P77781-1 .
?templateMotifSequenceProfileAlignmentOperationP7778181 edam:has_input signature:MF_01936 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0193685 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77781MF_0193676 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0193684 .
?targetMotifMatchRegionMatchBeginMF_0193684 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0193677 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0193685 edam:has_input signature:MF_01936 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77781MF_0193674, 1, (STRLEN(?templateMotifCigarP77781MF_0193674) - STRLEN(REPLACE(?templateMotifCigarP77781MF_0193674, CONCAT('^(?:-*[^-]){', STR(((63 - ?templateMotifSequenceMatchBeginPositionP7778175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77781MF_0193676, 1, (STRLEN(?targetMotifMatchCigarP77781MF_0193676) - STRLEN(REPLACE(?targetMotifMatchCigarP77781MF_0193676, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77781MF_0193676, 1, (STRLEN(?targetMotifMatchCigarP77781MF_0193676) - STRLEN(REPLACE(?targetMotifMatchCigarP77781MF_0193676, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0193677) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01936a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionP7778194 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7778196 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77781MF_0193689 .
?templateMotifSequenceMatchRegionP7778194 faldo:begin ?templateMotifSequenceMatchBeginP7778195 .
?templateMotifSequenceMatchBeginP7778195 faldo:position ?templateMotifSequenceMatchBeginPositionP7778190 ;
faldo:reference isoform:P77781-1 .
?templateMotifSequenceProfileAlignmentOperationP7778196 edam:has_input signature:MF_01936 ;
rdf:type edam:operation_0300 .
?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01936100 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77781MF_0193691 .
?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0193699 .
?targetMotifMatchRegionMatchBeginMF_0193699 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0193692 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01936100 edam:has_input signature:MF_01936 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77781MF_0193689, 1, (STRLEN(?templateMotifCigarP77781MF_0193689) - STRLEN(REPLACE(?templateMotifCigarP77781MF_0193689, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP7778190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77781MF_0193691, 1, (STRLEN(?targetMotifMatchCigarP77781MF_0193691) - STRLEN(REPLACE(?targetMotifMatchCigarP77781MF_0193691, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77781MF_0193691, 1, (STRLEN(?targetMotifMatchCigarP77781MF_0193691) - STRLEN(REPLACE(?targetMotifMatchCigarP77781MF_0193691, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0193692) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01936a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
}
"xsd:string |
