| http://purl.uniprot.org/unirules/MF_01944#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01944#construct-template-106 |
| http://purl.uniprot.org/unirules/MF_01944#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01944#construct-template-111 |
| http://purl.uniprot.org/unirules/MF_01944#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01944#construct-template-101 |
| http://purl.uniprot.org/unirules/MF_01944#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01944#construct-template-99 |
| http://purl.uniprot.org/unirules/MF_01944#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01944#construct-template-103 |
| http://purl.uniprot.org/unirules/MF_01944#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01944#construct-template-109 |
| http://purl.uniprot.org/unirules/MF_01944#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01944#construct-template-94 |
| http://purl.uniprot.org/unirules/MF_01944#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01944#construct-template-108 |
| http://purl.uniprot.org/unirules/MF_01944#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01944#construct-template-96 |
| http://purl.uniprot.org/unirules/MF_01944#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01944#construct-template-93 |
| http://purl.uniprot.org/unirules/MF_01944#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01944#construct-template-91 |
| http://purl.uniprot.org/unirules/MF_01944#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01944#construct-template-98 |
| http://purl.uniprot.org/unirules/MF_01944#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01944#construct-template-110 |
| http://purl.uniprot.org/unirules/MF_01944#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_01944#construct-template-95 |
| http://purl.uniprot.org/unirules/MF_01944#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_01944#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_01944#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_01944#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_01944#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_01944#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:680582 up:source unirule:MF_01944 .
_:680583 up:source unirule:MF_01944 .
_:680584 up:source unirule:MF_01944 .
_:680585 up:source unirule:MF_01944 .
_:680586 up:source unirule:MF_01944 .
_:680587 up:source unirule:MF_01944 .
_:680588 up:source unirule:MF_01944 .
_:680589 up:source unirule:MF_01944 .
_:680590 up:source unirule:MF_01944 .
_:680591 up:source unirule:MF_01944 .
_:680592 up:source unirule:MF_01944 .
_:680593 up:source unirule:MF_01944 .
_:680594 up:source unirule:MF_01944 .
_:680595 up:source unirule:MF_01944 .
_:680596 up:source unirule:MF_01944 .
_:680597 up:source unirule:MF_01944 .
_:680598 up:source unirule:MF_01944 .
_:680599 up:source unirule:MF_01944 .
_:680600 up:source unirule:MF_01944 .
_:680601 up:source unirule:MF_01944 .
_:680602 up:source unirule:MF_01944 .
_:680603 up:source unirule:MF_01944 .
_:680604 up:source unirule:MF_01944 .
_:680605 up:source unirule:MF_01944 .
_:680606 up:source unirule:MF_01944 .
_:680607 up:source unirule:MF_01944 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0005886 ,
GO:0009103 ,
GO:0036104 ,
keyword:1003 ,
keyword:1133 ,
keyword:12 ,
keyword:448 ,
keyword:472 ,
keyword:808 ,
keyword:812 ,
keyword:997 .
?gene0 skos:prefLabel 'lpxM' .
?annotation1 a up:Pathway_Annotation ;
rdfs:comment 'Glycolipid biosynthesis; KDO(2)-lipid A biosynthesis; KDO(2)-lipid A from CMP-3-deoxy-D-manno-octulosonate and lipid IV(A): step 4/4.' .
?annotation2 a up:Pathway_Annotation ;
rdfs:comment 'Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the LpxL/LpxM/LpxP family. LpxM subfamily.' .
?case6 up:alternativeName ?name8 ;
up:classifiedWith GO:0019107 ;
up:recommendedName ?name7 .
?name7 up:ecName '2.3.1.243' ;
up:fullName 'Lipid A biosynthesis myristoyltransferase' ;
rdf:type up:Structured_Name .
?name8 up:fullName 'Kdo(2)-lauroyl-lipid IV(A) myristoyltransferase' ;
rdf:type up:Structured_Name .
?case9 up:alternativeName ?name11 ;
up:classifiedWith GO:0016746 ;
up:recommendedName ?name10 .
?name10 up:ecName '2.3.1.243' ;
up:fullName 'Lipid A biosynthesis acyltransferase' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'Kdo(2)-lauroyl-lipid IV(A) acyltransferase' ;
rdf:type up:Structured_Name .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'HXXXXD motif' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?sam18 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane19 faldo:begin ?transmembraneb20 ;
faldo:end ?transmembranee21 .
?transmembraneb20 faldo:position ?transmembranebp22 .
?transmembranee21 faldo:position ?transmembraneep23 .
?keyword24 up:range ?transmembrane19 .
?keyword25 up:range ?transmembrane19 .
?keyword26 up:range ?transmembrane19 .
_:680608 a rdf:Statement ;
up:attribution _:680582 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:680609 a rdf:Statement ;
up:attribution _:680583 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:680610 a rdf:Statement ;
up:attribution _:680584 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:680611 a rdf:Statement ;
up:attribution _:680585 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:680612 a rdf:Statement ;
up:attribution _:680586 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:680613 a rdf:Statement ;
up:attribution _:680587 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:680614 a rdf:Statement ;
up:attribution _:680588 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:680615 a rdf:Statement ;
up:attribution _:680589 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:680616 a rdf:Statement ;
up:attribution _:680590 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:448 .
_:680617 a rdf:Statement ;
up:attribution _:680591 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:680618 a rdf:Statement ;
up:attribution _:680592 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:680619 a rdf:Statement ;
up:attribution _:680593 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:680620 a rdf:Statement ;
up:attribution _:680594 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:680621 a rdf:Statement ;
up:attribution _:680595 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0036104 .
_:680622 a rdf:Statement ;
up:attribution _:680596 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009103 .
_:680623 a rdf:Statement ;
up:attribution _:680597 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:680624 a rdf:Statement ;
up:attribution _:680598 ;
rdf:subject ?case6 ;
rdf:predicate up:recommendedName ;
rdf:object ?name7 .
_:680625 a rdf:Statement ;
up:attribution _:680599 ;
rdf:subject ?case6 ;
rdf:predicate up:alternativeName ;
rdf:object ?name8 .
_:680626 a rdf:Statement ;
up:attribution _:680600 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019107 .
_:680627 a rdf:Statement ;
up:attribution _:680601 ;
rdf:subject ?case9 ;
rdf:predicate up:recommendedName ;
rdf:object ?name10 .
_:680628 a rdf:Statement ;
up:attribution _:680602 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:680629 a rdf:Statement ;
up:attribution _:680603 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016746 .
_:680630 a rdf:Statement ;
up:source unirule:MF_01944 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:680631 a rdf:Statement ;
up:attribution _:680604 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:680632 a rdf:Statement ;
up:attribution _:680605 ;
rdf:subject ?sam18 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:680633 a rdf:Statement ;
up:attribution _:680606 ;
rdf:subject ?sam18 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:680634 a rdf:Statement ;
up:attribution _:680607 ;
rdf:subject ?sam18 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01944
#Rule MF_01944 Created by:? on:2014-12-16 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01944 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01944a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01944a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01944a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01944a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch31 faldo:location ?templateMotifSequenceMatchRegionP2420532 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2420534 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24205MF_0194427 .
?templateMotifSequenceMatchRegionP2420532 faldo:begin ?templateMotifSequenceMatchBeginP2420533 .
?templateMotifSequenceMatchBeginP2420533 faldo:position ?templateMotifSequenceMatchBeginPositionP2420528 ;
faldo:reference isoform:P24205-1 .
?templateMotifSequenceProfileAlignmentOperationP2420534 edam:has_input signature:MF_01944 ;
rdf:type edam:operation_0300 .
?targetMotifMatch35 faldo:location ?targetMotifMatchRegionMatch36 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0194438 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24205MF_0194429 .
?targetMotifMatchRegionMatch36 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0194437 .
?targetMotifMatchRegionMatchBeginMF_0194437 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0194430 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0194438 edam:has_input signature:MF_01944 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24205MF_0194427, 1, (STRLEN(?templateMotifCigarP24205MF_0194427) - STRLEN(REPLACE(?templateMotifCigarP24205MF_0194427, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP2420528) + 1)), '}'), '')))), '[a-z]', '')) AS ?step139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24205MF_0194429, 1, (STRLEN(?targetMotifMatchCigarP24205MF_0194429) - STRLEN(REPLACE(?targetMotifMatchCigarP24205MF_0194429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24205MF_0194429, 1, (STRLEN(?targetMotifMatchCigarP24205MF_0194429) - STRLEN(REPLACE(?targetMotifMatchCigarP24205MF_0194429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), '')))), '[^-]', ''))) AS ?step240) .
BIND(((?step240 + ?targetMotifMatchRegionMatchBeginPositionMF_0194430) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24205MF_0194427, 1, (STRLEN(?templateMotifCigarP24205MF_0194427) - STRLEN(REPLACE(?templateMotifCigarP24205MF_0194427, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP2420528) + 1)), '}'), '')))), '[a-z]', '')) AS ?step141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24205MF_0194429, 1, (STRLEN(?targetMotifMatchCigarP24205MF_0194429) - STRLEN(REPLACE(?targetMotifMatchCigarP24205MF_0194429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24205MF_0194429, 1, (STRLEN(?targetMotifMatchCigarP24205MF_0194429) - STRLEN(REPLACE(?targetMotifMatchCigarP24205MF_0194429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), '')))), '[^-]', ''))) AS ?step242) .
BIND(((?step242 + ?targetMotifMatchRegionMatchBeginPositionMF_0194430) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01944a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:561 .
BIND(?this AS ?case6) .
BIND(URI(CONCAT(STR(?this), '#MF_01944a7')) AS ?name7) .
BIND(URI(CONCAT(STR(?this), '#MF_01944a8')) AS ?name8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:561 .
})) .
BIND(?this AS ?case9) .
BIND(URI(CONCAT(STR(?this), '#MF_01944a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_01944a11')) AS ?name11) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane44 ;
up:sequence ?thisSequence .
?samtransmembrane44 up:range ?samtransmembraner45 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner45 faldo:begin ?samtransmembraneb46 ;
faldo:end ?samtransmembranee47 .
?samtransmembraneb46 faldo:position ?samtransmembranebp48 ;
faldo:reference ?thisSequence .
?samtransmembranee47 faldo:position ?samtransmembraneep49 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam18) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01944a24')) AS ?keyword24) .
BIND(URI(CONCAT(STR(?this), '#MF_01944a25')) AS ?keyword25) .
BIND(URI(CONCAT(STR(?this), '#MF_01944a26')) AS ?keyword26) .
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_01944 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_01944#construct |
