| http://purl.uniprot.org/unirules/MF_01946#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:681365 up:source unirule:MF_01946 .
_:681366 up:source unirule:MF_01946 .
_:681367 up:source unirule:MF_01946 .
_:681368 up:source unirule:MF_01946 .
_:681369 up:source unirule:MF_01946 .
_:681370 up:source unirule:MF_01946 .
_:681371 up:source unirule:MF_01946 .
_:681372 up:source unirule:MF_01946 .
_:681373 up:source unirule:MF_01946 .
_:681374 up:source unirule:MF_01946 .
_:681375 up:source unirule:MF_01946 .
_:681376 up:source unirule:MF_01946 .
_:681377 up:source unirule:MF_01946 .
_:681378 up:source unirule:MF_01946 .
_:681379 up:source unirule:MF_01946 .
_:681380 up:source unirule:MF_01946 .
_:681381 up:source unirule:MF_01946 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0005525 ,
GO:0005737 ,
GO:0008360 ,
keyword:133 ,
keyword:342 ,
keyword:547 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Tubulin-like protein CetZ' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'cetZ' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Involved in cell shape control.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the CetZ family.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
up:ligand ?ligand10 ;
rdf:type up:Binding_Site_Annotation .
?pfsb8 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?ligand10 rdfs:subClassOf chebi:37565 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:37565 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:37565 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:37565 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:37565 .
_:681382 a rdf:Statement ;
up:attribution _:681365 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:681383 a rdf:Statement ;
up:attribution _:681366 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:681384 a rdf:Statement ;
up:attribution _:681367 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:681385 a rdf:Statement ;
up:attribution _:681368 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:681386 a rdf:Statement ;
up:attribution _:681369 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:681387 a rdf:Statement ;
up:attribution _:681370 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:133 .
_:681388 a rdf:Statement ;
up:attribution _:681371 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:681389 a rdf:Statement ;
up:attribution _:681372 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:681390 a rdf:Statement ;
up:attribution _:681373 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:681391 a rdf:Statement ;
up:attribution _:681374 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005525 .
_:681392 a rdf:Statement ;
up:attribution _:681375 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008360 .
_:681393 a rdf:Statement ;
up:attribution _:681376 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:681394 a rdf:Statement ;
up:source unirule:MF_01946 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:681395 a rdf:Statement ;
up:attribution _:681377 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:681396 a rdf:Statement ;
up:source unirule:MF_01946 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:681397 a rdf:Statement ;
up:attribution _:681378 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:681398 a rdf:Statement ;
up:source unirule:MF_01946 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:681399 a rdf:Statement ;
up:attribution _:681379 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:681400 a rdf:Statement ;
up:source unirule:MF_01946 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:681401 a rdf:Statement ;
up:attribution _:681380 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:681402 a rdf:Statement ;
up:source unirule:MF_01946 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:681403 a rdf:Statement ;
up:attribution _:681381 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01946
#Rule MF_01946 Created by:? on:2015-01-14 Modified by:Edouard de Castro on:2022-11-19
VALUES ?supertaxon41 {taxon:2157 taxon:2}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01946 .
?thisOrganism rdfs:subClassOf+ ?supertaxon41 .
BIND(URI(CONCAT(STR(?this), '#MF_01946a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01946a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01946a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01946a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch46 faldo:location ?templateMotifSequenceMatchRegionD4GVD747 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD4GVD749 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD4GVD7MF_0194642 .
?templateMotifSequenceMatchRegionD4GVD747 faldo:begin ?templateMotifSequenceMatchBeginD4GVD748 .
?templateMotifSequenceMatchBeginD4GVD748 faldo:position ?templateMotifSequenceMatchBeginPositionD4GVD743 ;
faldo:reference isoform:D4GVD7-1 .
?templateMotifSequenceProfileAlignmentOperationD4GVD749 edam:has_input signature:MF_01946 ;
rdf:type edam:operation_0300 .
?targetMotifMatch50 faldo:location ?targetMotifMatchRegionMatch51 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0194653 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD4GVD7MF_0194644 .
?targetMotifMatchRegionMatch51 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0194652 .
?targetMotifMatchRegionMatchBeginMF_0194652 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0194645 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0194653 edam:has_input signature:MF_01946 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD4GVD7MF_0194642, 1, (STRLEN(?templateMotifCigarD4GVD7MF_0194642) - STRLEN(REPLACE(?templateMotifCigarD4GVD7MF_0194642, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionD4GVD743) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD4GVD7MF_0194644, 1, (STRLEN(?targetMotifMatchCigarD4GVD7MF_0194644) - STRLEN(REPLACE(?targetMotifMatchCigarD4GVD7MF_0194644, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD4GVD7MF_0194644, 1, (STRLEN(?targetMotifMatchCigarD4GVD7MF_0194644) - STRLEN(REPLACE(?targetMotifMatchCigarD4GVD7MF_0194644, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0194645) - 1) AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD4GVD7MF_0194642, 1, (STRLEN(?templateMotifCigarD4GVD7MF_0194642) - STRLEN(REPLACE(?templateMotifCigarD4GVD7MF_0194642, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionD4GVD743) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD4GVD7MF_0194644, 1, (STRLEN(?targetMotifMatchCigarD4GVD7MF_0194644) - STRLEN(REPLACE(?targetMotifMatchCigarD4GVD7MF_0194644, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD4GVD7MF_0194644, 1, (STRLEN(?targetMotifMatchCigarD4GVD7MF_0194644) - STRLEN(REPLACE(?targetMotifMatchCigarD4GVD7MF_0194644, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0194645) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) .
FILTER (REGEX('Q[AC]G[ARNDCQEGHILKMFPSTWYVBZJUOX][KRN]', SUBSTR(?thisSequenceValue, ?thisPositionOn11, (?thisPositionOn12 - ?thisPositionOn11)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01946a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionD4GVD764 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD4GVD766 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD4GVD7MF_0194659 .
?templateMotifSequenceMatchRegionD4GVD764 faldo:begin ?templateMotifSequenceMatchBeginD4GVD765 .
?templateMotifSequenceMatchBeginD4GVD765 faldo:position ?templateMotifSequenceMatchBeginPositionD4GVD760 ;
faldo:reference isoform:D4GVD7-1 .
?templateMotifSequenceProfileAlignmentOperationD4GVD766 edam:has_input signature:MF_01946 ;
rdf:type edam:operation_0300 .
?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0194670 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD4GVD7MF_0194661 .
?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0194669 .
?targetMotifMatchRegionMatchBeginMF_0194669 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0194662 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0194670 edam:has_input signature:MF_01946 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD4GVD7MF_0194659, 1, (STRLEN(?templateMotifCigarD4GVD7MF_0194659) - STRLEN(REPLACE(?templateMotifCigarD4GVD7MF_0194659, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionD4GVD760) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD4GVD7MF_0194661, 1, (STRLEN(?targetMotifMatchCigarD4GVD7MF_0194661) - STRLEN(REPLACE(?targetMotifMatchCigarD4GVD7MF_0194661, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD4GVD7MF_0194661, 1, (STRLEN(?targetMotifMatchCigarD4GVD7MF_0194661) - STRLEN(REPLACE(?targetMotifMatchCigarD4GVD7MF_0194661, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0194662) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD4GVD7MF_0194659, 1, (STRLEN(?templateMotifCigarD4GVD7MF_0194659) - STRLEN(REPLACE(?templateMotifCigarD4GVD7MF_0194659, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionD4GVD760) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD4GVD7MF_0194661, 1, (STRLEN(?targetMotifMatchCigarD4GVD7MF_0194661) - STRLEN(REPLACE(?targetMotifMatchCigarD4GVD7MF_0194661, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD4GVD7MF_0194661, 1, (STRLEN(?targetMotifMatchCigarD4GVD7MF_0194661) - STRLEN(REPLACE(?targetMotifMatchCigarD4GVD7MF_0194661, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0194662) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER (REGEX('[GA][TS]G', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01946a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionD4GVD781 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD4GVD783 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD4GVD7MF_0194676 .
?templateMotifSequenceMatchRegionD4GVD781 faldo:begin ?templateMotifSequenceMatchBeginD4GVD782 .
?templateMotifSequenceMatchBeginD4GVD782 faldo:position ?templateMotifSequenceMatchBeginPositionD4GVD777 ;
faldo:reference isoform:D4GVD7-1 .
?templateMotifSequenceProfileAlignmentOperationD4GVD783 edam:has_input signature:MF_01946 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0194687 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD4GVD7MF_0194678 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0194686 .
?targetMotifMatchRegionMatchBeginMF_0194686 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0194679 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0194687 edam:has_input signature:MF_01946 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD4GVD7MF_0194676, 1, (STRLEN(?templateMotifCigarD4GVD7MF_0194676) - STRLEN(REPLACE(?templateMotifCigarD4GVD7MF_0194676, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionD4GVD777) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD4GVD7MF_0194678, 1, (STRLEN(?targetMotifMatchCigarD4GVD7MF_0194678) - STRLEN(REPLACE(?targetMotifMatchCigarD4GVD7MF_0194678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD4GVD7MF_0194678, 1, (STRLEN(?targetMotifMatchCigarD4GVD7MF_0194678) - STRLEN(REPLACE(?targetMotifMatchCigarD4GVD7MF_0194678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0194679) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01946a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionD4GVD796 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD4GVD798 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD4GVD7MF_0194691 .
?templateMotifSequenceMatchRegionD4GVD796 faldo:begin ?templateMotifSequenceMatchBeginD4GVD797 .
?templateMotifSequenceMatchBeginD4GVD797 faldo:position ?templateMotifSequenceMatchBeginPositionD4GVD792 ;
faldo:reference isoform:D4GVD7-1 .
?templateMotifSequenceProfileAlignmentOperationD4GVD798 edam:has_input signature:MF_01946 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01946102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD4GVD7MF_0194693 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01946101 .
?targetMotifMatchRegionMatchBeginMF_01946101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0194694 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01946102 edam:has_input signature:MF_01946 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD4GVD7MF_0194691, 1, (STRLEN(?templateMotifCigarD4GVD7MF_0194691) - STRLEN(REPLACE(?templateMotifCigarD4GVD7MF_0194691, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionD4GVD792) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD4GVD7MF_0194693, 1, (STRLEN(?targetMotifMatchCigarD4GVD7MF_0194693) - STRLEN(REPLACE(?targetMotifMatchCigarD4GVD7MF_0194693, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD4GVD7MF_0194693, 1, (STRLEN(?targetMotifMatchCigarD4GVD7MF_0194693) - STRLEN(REPLACE(?targetMotifMatchCigarD4GVD7MF_0194693, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0194694) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01946a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionD4GVD7111 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD4GVD7113 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD4GVD7MF_01946106 .
?templateMotifSequenceMatchRegionD4GVD7111 faldo:begin ?templateMotifSequenceMatchBeginD4GVD7112 .
?templateMotifSequenceMatchBeginD4GVD7112 faldo:position ?templateMotifSequenceMatchBeginPositionD4GVD7107 ;
faldo:reference isoform:D4GVD7-1 .
?templateMotifSequenceProfileAlignmentOperationD4GVD7113 edam:has_input signature:MF_01946 ;
rdf:type edam:operation_0300 .
?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01946117 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD4GVD7MF_01946108 .
?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01946116 .
?targetMotifMatchRegionMatchBeginMF_01946116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01946109 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01946117 edam:has_input signature:MF_01946 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD4GVD7MF_01946106, 1, (STRLEN(?templateMotifCigarD4GVD7MF_01946106) - STRLEN(REPLACE(?templateMotifCigarD4GVD7MF_01946106, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionD4GVD7107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD4GVD7MF_01946108, 1, (STRLEN(?targetMotifMatchCigarD4GVD7MF_01946108) - STRLEN(REPLACE(?targetMotifMatchCigarD4GVD7MF_01946108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD4GVD7MF_01946108, 1, (STRLEN(?targetMotifMatchCigarD4GVD7MF_01946108) - STRLEN(REPLACE(?targetMotifMatchCigarD4GVD7MF_01946108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_01946109) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01946a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
}
"xsd:string |
