| http://purl.uniprot.org/unirules/MF_01957#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:685147 up:source unirule:MF_01957 .
_:685148 up:source unirule:MF_01957 .
_:685149 up:source unirule:MF_01957 .
_:685150 up:source unirule:MF_01957 .
_:685151 up:source unirule:MF_01957 .
_:685152 up:source unirule:MF_01957 .
_:685153 up:source unirule:MF_01957 .
_:685154 up:source unirule:MF_01957 .
_:685155 up:source unirule:MF_01957 .
_:685156 up:source unirule:MF_01957 .
_:685157 up:source unirule:MF_01957 .
_:685158 up:source unirule:MF_01957 .
_:685159 up:source unirule:MF_01957 .
_:685160 up:source unirule:MF_01957 .
_:685161 up:source unirule:MF_01957 .
_:685162 up:source unirule:MF_01957 .
_:685163 up:source unirule:MF_01957 .
_:685164 up:source unirule:MF_01957 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0004674 ,
keyword:418 ,
keyword:547 ,
keyword:597 ,
keyword:67 ,
keyword:723 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.11.1' ;
up:fullName 'Serine/threonine-protein kinase PknD' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'pknD' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Together with the serine/threonine kinase Pkn1, may play a role in the specific interactions with host proteins during intracellular growth.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:PTM_Annotation ;
rdfs:comment 'Autophosphorylated on serine and threonine residues.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Domain_Extent_Annotation ;
rdfs:comment 'Protein kinase' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:30616 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:30616 .
_:685165 a rdf:Statement ;
up:attribution _:685147 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:685166 a rdf:Statement ;
up:attribution _:685148 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:685167 a rdf:Statement ;
up:attribution _:685149 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:685168 a rdf:Statement ;
up:attribution _:685150 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:685169 a rdf:Statement ;
up:attribution _:685151 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:685170 a rdf:Statement ;
up:attribution _:685152 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:685171 a rdf:Statement ;
up:attribution _:685153 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:685172 a rdf:Statement ;
up:attribution _:685154 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:685173 a rdf:Statement ;
up:attribution _:685155 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:685174 a rdf:Statement ;
up:attribution _:685156 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:685175 a rdf:Statement ;
up:attribution _:685157 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:685176 a rdf:Statement ;
up:attribution _:685158 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:723 .
_:685177 a rdf:Statement ;
up:attribution _:685159 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:685178 a rdf:Statement ;
up:attribution _:685160 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004674 .
_:685179 a rdf:Statement ;
up:source unirule:MF_01957 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:685180 a rdf:Statement ;
up:attribution _:685161 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:685181 a rdf:Statement ;
up:source unirule:MF_01957 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:685182 a rdf:Statement ;
up:attribution _:685162 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:685183 a rdf:Statement ;
up:source unirule:MF_01957 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:685184 a rdf:Statement ;
up:attribution _:685163 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:685185 a rdf:Statement ;
up:source unirule:MF_01957 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:685186 a rdf:Statement ;
up:attribution _:685164 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01957
#Rule MF_01957 Created by:? on:2006-05-17 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01957 .
?thisOrganism rdfs:subClassOf+ taxon:204428 .
BIND(URI(CONCAT(STR(?this), '#MF_01957a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01957a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01957a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01957a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01957a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01957a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionP0DPS840 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0DPS842 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0DPS8MF_0195735 .
?templateMotifSequenceMatchRegionP0DPS840 faldo:begin ?templateMotifSequenceMatchBeginP0DPS841 .
?templateMotifSequenceMatchBeginP0DPS841 faldo:position ?templateMotifSequenceMatchBeginPositionP0DPS836 ;
faldo:reference isoform:P0DPS8-1 .
?templateMotifSequenceProfileAlignmentOperationP0DPS842 edam:has_input signature:MF_01957 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0195746 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0DPS8MF_0195737 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0195745 .
?targetMotifMatchRegionMatchBeginMF_0195745 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0195738 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0195746 edam:has_input signature:MF_01957 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DPS8MF_0195735, 1, (STRLEN(?templateMotifCigarP0DPS8MF_0195735) - STRLEN(REPLACE(?templateMotifCigarP0DPS8MF_0195735, CONCAT('^(?:-*[^-]){', STR(((4 - ?templateMotifSequenceMatchBeginPositionP0DPS836) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DPS8MF_0195737, 1, (STRLEN(?targetMotifMatchCigarP0DPS8MF_0195737) - STRLEN(REPLACE(?targetMotifMatchCigarP0DPS8MF_0195737, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DPS8MF_0195737, 1, (STRLEN(?targetMotifMatchCigarP0DPS8MF_0195737) - STRLEN(REPLACE(?targetMotifMatchCigarP0DPS8MF_0195737, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0195738) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DPS8MF_0195735, 1, (STRLEN(?templateMotifCigarP0DPS8MF_0195735) - STRLEN(REPLACE(?templateMotifCigarP0DPS8MF_0195735, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionP0DPS836) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DPS8MF_0195737, 1, (STRLEN(?targetMotifMatchCigarP0DPS8MF_0195737) - STRLEN(REPLACE(?targetMotifMatchCigarP0DPS8MF_0195737, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DPS8MF_0195737, 1, (STRLEN(?targetMotifMatchCigarP0DPS8MF_0195737) - STRLEN(REPLACE(?targetMotifMatchCigarP0DPS8MF_0195737, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0195738) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((BOUND(?thisPositionOn13) && BOUND(?thisPositionOn14))) .
BIND(URI(CONCAT(STR(?this), '#MF_01957a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch56 faldo:location ?templateMotifSequenceMatchRegionP0DPS857 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0DPS859 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0DPS8MF_0195752 .
?templateMotifSequenceMatchRegionP0DPS857 faldo:begin ?templateMotifSequenceMatchBeginP0DPS858 .
?templateMotifSequenceMatchBeginP0DPS858 faldo:position ?templateMotifSequenceMatchBeginPositionP0DPS853 ;
faldo:reference isoform:P0DPS8-1 .
?templateMotifSequenceProfileAlignmentOperationP0DPS859 edam:has_input signature:MF_01957 ;
rdf:type edam:operation_0300 .
?targetMotifMatch60 faldo:location ?targetMotifMatchRegionMatch61 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0195763 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0DPS8MF_0195754 .
?targetMotifMatchRegionMatch61 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0195762 .
?targetMotifMatchRegionMatchBeginMF_0195762 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0195755 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0195763 edam:has_input signature:MF_01957 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DPS8MF_0195752, 1, (STRLEN(?templateMotifCigarP0DPS8MF_0195752) - STRLEN(REPLACE(?templateMotifCigarP0DPS8MF_0195752, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP0DPS853) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DPS8MF_0195754, 1, (STRLEN(?targetMotifMatchCigarP0DPS8MF_0195754) - STRLEN(REPLACE(?targetMotifMatchCigarP0DPS8MF_0195754, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DPS8MF_0195754, 1, (STRLEN(?targetMotifMatchCigarP0DPS8MF_0195754) - STRLEN(REPLACE(?targetMotifMatchCigarP0DPS8MF_0195754, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0195755) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DPS8MF_0195752, 1, (STRLEN(?templateMotifCigarP0DPS8MF_0195752) - STRLEN(REPLACE(?templateMotifCigarP0DPS8MF_0195752, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP0DPS853) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DPS8MF_0195754, 1, (STRLEN(?targetMotifMatchCigarP0DPS8MF_0195754) - STRLEN(REPLACE(?targetMotifMatchCigarP0DPS8MF_0195754, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DPS8MF_0195754, 1, (STRLEN(?targetMotifMatchCigarP0DPS8MF_0195754) - STRLEN(REPLACE(?targetMotifMatchCigarP0DPS8MF_0195754, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0195755) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('[IV]G[KR]GGMG[ED][VI]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01957a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch73 faldo:location ?templateMotifSequenceMatchRegionP0DPS874 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0DPS876 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0DPS8MF_0195769 .
?templateMotifSequenceMatchRegionP0DPS874 faldo:begin ?templateMotifSequenceMatchBeginP0DPS875 .
?templateMotifSequenceMatchBeginP0DPS875 faldo:position ?templateMotifSequenceMatchBeginPositionP0DPS870 ;
faldo:reference isoform:P0DPS8-1 .
?templateMotifSequenceProfileAlignmentOperationP0DPS876 edam:has_input signature:MF_01957 ;
rdf:type edam:operation_0300 .
?targetMotifMatch77 faldo:location ?targetMotifMatchRegionMatch78 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0195780 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0DPS8MF_0195771 .
?targetMotifMatchRegionMatch78 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0195779 .
?targetMotifMatchRegionMatchBeginMF_0195779 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0195772 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0195780 edam:has_input signature:MF_01957 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DPS8MF_0195769, 1, (STRLEN(?templateMotifCigarP0DPS8MF_0195769) - STRLEN(REPLACE(?templateMotifCigarP0DPS8MF_0195769, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP0DPS870) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DPS8MF_0195771, 1, (STRLEN(?targetMotifMatchCigarP0DPS8MF_0195771) - STRLEN(REPLACE(?targetMotifMatchCigarP0DPS8MF_0195771, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DPS8MF_0195771, 1, (STRLEN(?targetMotifMatchCigarP0DPS8MF_0195771) - STRLEN(REPLACE(?targetMotifMatchCigarP0DPS8MF_0195771, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0195772) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01957a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionP0DPS889 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0DPS891 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0DPS8MF_0195784 .
?templateMotifSequenceMatchRegionP0DPS889 faldo:begin ?templateMotifSequenceMatchBeginP0DPS890 .
?templateMotifSequenceMatchBeginP0DPS890 faldo:position ?templateMotifSequenceMatchBeginPositionP0DPS885 ;
faldo:reference isoform:P0DPS8-1 .
?templateMotifSequenceProfileAlignmentOperationP0DPS891 edam:has_input signature:MF_01957 ;
rdf:type edam:operation_0300 .
?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0195795 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0DPS8MF_0195786 .
?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0195794 .
?targetMotifMatchRegionMatchBeginMF_0195794 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0195787 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0195795 edam:has_input signature:MF_01957 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DPS8MF_0195784, 1, (STRLEN(?templateMotifCigarP0DPS8MF_0195784) - STRLEN(REPLACE(?templateMotifCigarP0DPS8MF_0195784, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP0DPS885) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DPS8MF_0195786, 1, (STRLEN(?targetMotifMatchCigarP0DPS8MF_0195786) - STRLEN(REPLACE(?targetMotifMatchCigarP0DPS8MF_0195786, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DPS8MF_0195786, 1, (STRLEN(?targetMotifMatchCigarP0DPS8MF_0195786) - STRLEN(REPLACE(?targetMotifMatchCigarP0DPS8MF_0195786, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0195787) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01957a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
}
"xsd:string |
