| http://purl.uniprot.org/unirules/MF_01986#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:700802 up:source unirule:MF_01986 .
_:700803 up:source unirule:MF_01986 .
_:700804 up:source unirule:MF_01986 .
_:700805 up:source unirule:MF_01986 .
_:700806 up:source unirule:MF_01986 .
_:700807 up:source unirule:MF_01986 .
_:700808 up:source unirule:MF_01986 .
_:700809 up:source unirule:MF_01986 .
_:700810 up:source unirule:MF_01986 .
_:700811 up:source unirule:MF_01986 .
_:700812 up:source unirule:MF_01986 .
_:700813 up:source unirule:MF_01986 .
_:700814 up:source unirule:MF_01986 .
_:700815 up:source unirule:MF_01986 .
_:700816 up:source unirule:MF_01986 .
_:700817 up:source unirule:MF_01986 .
_:700818 up:source unirule:MF_01986 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0004659 ,
keyword:216 ,
keyword:285 ,
keyword:288 ,
keyword:58 ,
keyword:637 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.5.1.129' ;
up:fullName 'Probable UbiX-like flavin prenyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Phenolic acid decarboxylase subunit B' ;
up:shortName 'PAD' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homododecamer.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the UbiX/PAD1 family. YclB subfamily.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:58210 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:58210 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:58210 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:58210 .
_:700819 a rdf:Statement ;
up:attribution _:700802 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:700820 a rdf:Statement ;
up:attribution _:700803 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:700821 a rdf:Statement ;
up:attribution _:700804 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:700822 a rdf:Statement ;
up:attribution _:700805 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:700823 a rdf:Statement ;
up:attribution _:700806 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:700824 a rdf:Statement ;
up:attribution _:700807 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:700825 a rdf:Statement ;
up:attribution _:700808 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:700826 a rdf:Statement ;
up:attribution _:700809 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:700827 a rdf:Statement ;
up:attribution _:700810 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:637 .
_:700828 a rdf:Statement ;
up:attribution _:700811 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:700829 a rdf:Statement ;
up:attribution _:700812 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:58 .
_:700830 a rdf:Statement ;
up:attribution _:700813 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:216 .
_:700831 a rdf:Statement ;
up:attribution _:700814 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004659 .
_:700832 a rdf:Statement ;
up:source unirule:MF_01986 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:700833 a rdf:Statement ;
up:attribution _:700815 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:700834 a rdf:Statement ;
up:source unirule:MF_01986 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:700835 a rdf:Statement ;
up:attribution _:700816 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:700836 a rdf:Statement ;
up:source unirule:MF_01986 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:700837 a rdf:Statement ;
up:attribution _:700817 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:700838 a rdf:Statement ;
up:source unirule:MF_01986 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:700839 a rdf:Statement ;
up:attribution _:700818 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01986
#Rule MF_01986 Created by:? on:2015-09-01 Modified by:Edouard de Castro on:2024-09-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01986 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01986a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01986a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01986a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01986a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01986a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01986a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionP6977240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6977242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69772MF_0198635 .
?templateMotifSequenceMatchRegionP6977240 faldo:begin ?templateMotifSequenceMatchBeginP6977241 .
?templateMotifSequenceMatchBeginP6977241 faldo:position ?templateMotifSequenceMatchBeginPositionP6977236 ;
faldo:reference isoform:P69772-1 .
?templateMotifSequenceProfileAlignmentOperationP6977242 edam:has_input signature:MF_01986 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0198646 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69772MF_0198637 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0198645 .
?targetMotifMatchRegionMatchBeginMF_0198645 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0198638 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0198646 edam:has_input signature:MF_01986 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69772MF_0198635, 1, (STRLEN(?templateMotifCigarP69772MF_0198635) - STRLEN(REPLACE(?templateMotifCigarP69772MF_0198635, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionP6977236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69772MF_0198637, 1, (STRLEN(?targetMotifMatchCigarP69772MF_0198637) - STRLEN(REPLACE(?targetMotifMatchCigarP69772MF_0198637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69772MF_0198637, 1, (STRLEN(?targetMotifMatchCigarP69772MF_0198637) - STRLEN(REPLACE(?targetMotifMatchCigarP69772MF_0198637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0198638) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69772MF_0198635, 1, (STRLEN(?templateMotifCigarP69772MF_0198635) - STRLEN(REPLACE(?templateMotifCigarP69772MF_0198635, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP6977236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69772MF_0198637, 1, (STRLEN(?targetMotifMatchCigarP69772MF_0198637) - STRLEN(REPLACE(?targetMotifMatchCigarP69772MF_0198637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69772MF_0198637, 1, (STRLEN(?targetMotifMatchCigarP69772MF_0198637) - STRLEN(REPLACE(?targetMotifMatchCigarP69772MF_0198637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0198638) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER (REGEX('G[AGS][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01986a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch56 faldo:location ?templateMotifSequenceMatchRegionP6977257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6977259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69772MF_0198652 .
?templateMotifSequenceMatchRegionP6977257 faldo:begin ?templateMotifSequenceMatchBeginP6977258 .
?templateMotifSequenceMatchBeginP6977258 faldo:position ?templateMotifSequenceMatchBeginPositionP6977253 ;
faldo:reference isoform:P69772-1 .
?templateMotifSequenceProfileAlignmentOperationP6977259 edam:has_input signature:MF_01986 ;
rdf:type edam:operation_0300 .
?targetMotifMatch60 faldo:location ?targetMotifMatchRegionMatch61 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0198663 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69772MF_0198654 .
?targetMotifMatchRegionMatch61 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0198662 .
?targetMotifMatchRegionMatchBeginMF_0198662 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0198655 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0198663 edam:has_input signature:MF_01986 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69772MF_0198652, 1, (STRLEN(?templateMotifCigarP69772MF_0198652) - STRLEN(REPLACE(?templateMotifCigarP69772MF_0198652, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionP6977253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69772MF_0198654, 1, (STRLEN(?targetMotifMatchCigarP69772MF_0198654) - STRLEN(REPLACE(?targetMotifMatchCigarP69772MF_0198654, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69772MF_0198654, 1, (STRLEN(?targetMotifMatchCigarP69772MF_0198654) - STRLEN(REPLACE(?targetMotifMatchCigarP69772MF_0198654, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0198655) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69772MF_0198652, 1, (STRLEN(?templateMotifCigarP69772MF_0198652) - STRLEN(REPLACE(?templateMotifCigarP69772MF_0198652, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionP6977253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69772MF_0198654, 1, (STRLEN(?targetMotifMatchCigarP69772MF_0198654) - STRLEN(REPLACE(?targetMotifMatchCigarP69772MF_0198654, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69772MF_0198654, 1, (STRLEN(?targetMotifMatchCigarP69772MF_0198654) - STRLEN(REPLACE(?targetMotifMatchCigarP69772MF_0198654, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0198655) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER (REGEX('[ST][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01986a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch73 faldo:location ?templateMotifSequenceMatchRegionP6977274 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6977276 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69772MF_0198669 .
?templateMotifSequenceMatchRegionP6977274 faldo:begin ?templateMotifSequenceMatchBeginP6977275 .
?templateMotifSequenceMatchBeginP6977275 faldo:position ?templateMotifSequenceMatchBeginPositionP6977270 ;
faldo:reference isoform:P69772-1 .
?templateMotifSequenceProfileAlignmentOperationP6977276 edam:has_input signature:MF_01986 ;
rdf:type edam:operation_0300 .
?targetMotifMatch77 faldo:location ?targetMotifMatchRegionMatch78 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0198680 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69772MF_0198671 .
?targetMotifMatchRegionMatch78 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0198679 .
?targetMotifMatchRegionMatchBeginMF_0198679 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0198672 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0198680 edam:has_input signature:MF_01986 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69772MF_0198669, 1, (STRLEN(?templateMotifCigarP69772MF_0198669) - STRLEN(REPLACE(?templateMotifCigarP69772MF_0198669, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP6977270) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69772MF_0198671, 1, (STRLEN(?targetMotifMatchCigarP69772MF_0198671) - STRLEN(REPLACE(?targetMotifMatchCigarP69772MF_0198671, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69772MF_0198671, 1, (STRLEN(?targetMotifMatchCigarP69772MF_0198671) - STRLEN(REPLACE(?targetMotifMatchCigarP69772MF_0198671, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0198672) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01986a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionP6977289 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6977291 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69772MF_0198684 .
?templateMotifSequenceMatchRegionP6977289 faldo:begin ?templateMotifSequenceMatchBeginP6977290 .
?templateMotifSequenceMatchBeginP6977290 faldo:position ?templateMotifSequenceMatchBeginPositionP6977285 ;
faldo:reference isoform:P69772-1 .
?templateMotifSequenceProfileAlignmentOperationP6977291 edam:has_input signature:MF_01986 ;
rdf:type edam:operation_0300 .
?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0198695 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69772MF_0198686 .
?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0198694 .
?targetMotifMatchRegionMatchBeginMF_0198694 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0198687 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0198695 edam:has_input signature:MF_01986 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69772MF_0198684, 1, (STRLEN(?templateMotifCigarP69772MF_0198684) - STRLEN(REPLACE(?templateMotifCigarP69772MF_0198684, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP6977285) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69772MF_0198686, 1, (STRLEN(?targetMotifMatchCigarP69772MF_0198686) - STRLEN(REPLACE(?targetMotifMatchCigarP69772MF_0198686, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69772MF_0198686, 1, (STRLEN(?targetMotifMatchCigarP69772MF_0198686) - STRLEN(REPLACE(?targetMotifMatchCigarP69772MF_0198686, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0198687) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01986a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
}
"xsd:string |
