| http://purl.uniprot.org/unirules/MF_02007#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:706417 up:source unirule:MF_02007 .
_:706418 up:source unirule:MF_02007 .
_:706419 up:source unirule:MF_02007 .
_:706420 up:source unirule:MF_02007 .
_:706421 up:source unirule:MF_02007 .
_:706422 up:source unirule:MF_02007 .
_:706423 up:source unirule:MF_02007 .
_:706424 up:source unirule:MF_02007 .
_:706425 up:source unirule:MF_02007 .
_:706426 up:source unirule:MF_02007 .
_:706427 up:source unirule:MF_02007 .
_:706428 up:source unirule:MF_02007 .
_:706429 up:source unirule:MF_02007 .
_:706430 up:source unirule:MF_02007 .
_:706431 up:source unirule:MF_02007 .
_:706432 up:source unirule:MF_02007 .
_:706433 up:source unirule:MF_02007 .
_:706434 up:source unirule:MF_02007 .
_:706435 up:source unirule:MF_02007 .
_:706436 up:source unirule:MF_02007 .
_:706437 up:source unirule:MF_02007 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0004831 ,
GO:0005524 ,
GO:0005737 ,
GO:0006437 ,
keyword:30 ,
keyword:436 ,
keyword:547 ,
keyword:648 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.1.1.1' ;
up:fullName 'Tyrosine--tRNA ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Tyrosyl-tRNA synthetase' ;
up:shortName 'TyrRS' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'tyrS' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Motif_Annotation ;
rdfs:comment "'HIGH' region" .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Motif_Annotation ;
rdfs:comment "'KMSKS' region" .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:30616 .
_:706438 a rdf:Statement ;
up:attribution _:706417 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:706439 a rdf:Statement ;
up:attribution _:706418 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:706440 a rdf:Statement ;
up:attribution _:706419 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:706441 a rdf:Statement ;
up:attribution _:706420 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:706442 a rdf:Statement ;
up:attribution _:706421 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:706443 a rdf:Statement ;
up:attribution _:706422 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:706444 a rdf:Statement ;
up:attribution _:706423 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:706445 a rdf:Statement ;
up:attribution _:706424 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:706446 a rdf:Statement ;
up:attribution _:706425 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:706447 a rdf:Statement ;
up:attribution _:706426 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:30 .
_:706448 a rdf:Statement ;
up:attribution _:706427 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:706449 a rdf:Statement ;
up:attribution _:706428 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:706450 a rdf:Statement ;
up:attribution _:706429 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:706451 a rdf:Statement ;
up:attribution _:706430 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:706452 a rdf:Statement ;
up:attribution _:706431 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004831 .
_:706453 a rdf:Statement ;
up:attribution _:706432 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:706454 a rdf:Statement ;
up:attribution _:706433 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006437 .
_:706455 a rdf:Statement ;
up:attribution _:706434 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:706456 a rdf:Statement ;
up:source unirule:MF_02007 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:706457 a rdf:Statement ;
up:attribution _:706435 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:706458 a rdf:Statement ;
up:source unirule:MF_02007 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:706459 a rdf:Statement ;
up:attribution _:706436 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:706460 a rdf:Statement ;
up:source unirule:MF_02007 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:706461 a rdf:Statement ;
up:attribution _:706437 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02007
#Rule MF_02007 Created by:? on:2006-05-03 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02007 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_02007a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02007a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02007a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02007a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02007a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02007a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02007a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch33 faldo:location ?templateMotifSequenceMatchRegionP4125634 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4125636 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP41256MF_0200729 .
?templateMotifSequenceMatchRegionP4125634 faldo:begin ?templateMotifSequenceMatchBeginP4125635 .
?templateMotifSequenceMatchBeginP4125635 faldo:position ?templateMotifSequenceMatchBeginPositionP4125630 ;
faldo:reference isoform:P41256-1 .
?templateMotifSequenceProfileAlignmentOperationP4125636 edam:has_input signature:MF_02007 ;
rdf:type edam:operation_0300 .
?targetMotifMatch37 faldo:location ?targetMotifMatchRegionMatch38 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0200740 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP41256MF_0200731 .
?targetMotifMatchRegionMatch38 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0200739 .
?targetMotifMatchRegionMatchBeginMF_0200739 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0200732 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0200740 edam:has_input signature:MF_02007 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP41256MF_0200729, 1, (STRLEN(?templateMotifCigarP41256MF_0200729) - STRLEN(REPLACE(?templateMotifCigarP41256MF_0200729, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP4125630) + 1)), '}'), '')))), '[a-z]', '')) AS ?step141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP41256MF_0200731, 1, (STRLEN(?targetMotifMatchCigarP41256MF_0200731) - STRLEN(REPLACE(?targetMotifMatchCigarP41256MF_0200731, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP41256MF_0200731, 1, (STRLEN(?targetMotifMatchCigarP41256MF_0200731) - STRLEN(REPLACE(?targetMotifMatchCigarP41256MF_0200731, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), '')))), '[^-]', ''))) AS ?step242) .
BIND(((?step242 + ?targetMotifMatchRegionMatchBeginPositionMF_0200732) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP41256MF_0200729, 1, (STRLEN(?templateMotifCigarP41256MF_0200729) - STRLEN(REPLACE(?templateMotifCigarP41256MF_0200729, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionP4125630) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP41256MF_0200731, 1, (STRLEN(?targetMotifMatchCigarP41256MF_0200731) - STRLEN(REPLACE(?targetMotifMatchCigarP41256MF_0200731, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP41256MF_0200731, 1, (STRLEN(?targetMotifMatchCigarP41256MF_0200731) - STRLEN(REPLACE(?targetMotifMatchCigarP41256MF_0200731, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) .
BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0200732) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER (REGEX('P[TS][ARGS][PASTRK][DEN][LIV][HT][LIV]G[HA]', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02007a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch50 faldo:location ?templateMotifSequenceMatchRegionP4125651 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4125653 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP41256MF_0200746 .
?templateMotifSequenceMatchRegionP4125651 faldo:begin ?templateMotifSequenceMatchBeginP4125652 .
?templateMotifSequenceMatchBeginP4125652 faldo:position ?templateMotifSequenceMatchBeginPositionP4125647 ;
faldo:reference isoform:P41256-1 .
?templateMotifSequenceProfileAlignmentOperationP4125653 edam:has_input signature:MF_02007 ;
rdf:type edam:operation_0300 .
?targetMotifMatch54 faldo:location ?targetMotifMatchRegionMatch55 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0200757 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP41256MF_0200748 .
?targetMotifMatchRegionMatch55 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0200756 .
?targetMotifMatchRegionMatchBeginMF_0200756 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0200749 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0200757 edam:has_input signature:MF_02007 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP41256MF_0200746, 1, (STRLEN(?templateMotifCigarP41256MF_0200746) - STRLEN(REPLACE(?templateMotifCigarP41256MF_0200746, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP4125647) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP41256MF_0200748, 1, (STRLEN(?targetMotifMatchCigarP41256MF_0200748) - STRLEN(REPLACE(?targetMotifMatchCigarP41256MF_0200748, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP41256MF_0200748, 1, (STRLEN(?targetMotifMatchCigarP41256MF_0200748) - STRLEN(REPLACE(?targetMotifMatchCigarP41256MF_0200748, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0200749) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP41256MF_0200746, 1, (STRLEN(?templateMotifCigarP41256MF_0200746) - STRLEN(REPLACE(?templateMotifCigarP41256MF_0200746, CONCAT('^(?:-*[^-]){', STR(((235 - ?templateMotifSequenceMatchBeginPositionP4125647) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP41256MF_0200748, 1, (STRLEN(?targetMotifMatchCigarP41256MF_0200748) - STRLEN(REPLACE(?targetMotifMatchCigarP41256MF_0200748, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP41256MF_0200748, 1, (STRLEN(?targetMotifMatchCigarP41256MF_0200748) - STRLEN(REPLACE(?targetMotifMatchCigarP41256MF_0200748, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0200749) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER (REGEX('KMSK[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02007a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionP4125668 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4125670 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP41256MF_0200763 .
?templateMotifSequenceMatchRegionP4125668 faldo:begin ?templateMotifSequenceMatchBeginP4125669 .
?templateMotifSequenceMatchBeginP4125669 faldo:position ?templateMotifSequenceMatchBeginPositionP4125664 ;
faldo:reference isoform:P41256-1 .
?templateMotifSequenceProfileAlignmentOperationP4125670 edam:has_input signature:MF_02007 ;
rdf:type edam:operation_0300 .
?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0200774 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP41256MF_0200765 .
?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0200773 .
?targetMotifMatchRegionMatchBeginMF_0200773 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0200766 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0200774 edam:has_input signature:MF_02007 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP41256MF_0200763, 1, (STRLEN(?templateMotifCigarP41256MF_0200763) - STRLEN(REPLACE(?templateMotifCigarP41256MF_0200763, CONCAT('^(?:-*[^-]){', STR(((234 - ?templateMotifSequenceMatchBeginPositionP4125664) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP41256MF_0200765, 1, (STRLEN(?targetMotifMatchCigarP41256MF_0200765) - STRLEN(REPLACE(?targetMotifMatchCigarP41256MF_0200765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP41256MF_0200765, 1, (STRLEN(?targetMotifMatchCigarP41256MF_0200765) - STRLEN(REPLACE(?targetMotifMatchCigarP41256MF_0200765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0200766) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02007a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
}
"xsd:string |
