| http://purl.uniprot.org/unirules/MF_02039#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:719011 up:source unirule:MF_02039 .
_:719012 up:source unirule:MF_02039 .
_:719013 up:source unirule:MF_02039 .
_:719014 up:source unirule:MF_02039 .
_:719015 up:source unirule:MF_02039 .
_:719016 up:source unirule:MF_02039 .
_:719017 up:source unirule:MF_02039 .
_:719018 up:source unirule:MF_02039 .
_:719019 up:source unirule:MF_02039 .
_:719020 up:source unirule:MF_02039 .
_:719021 up:source unirule:MF_02039 .
_:719022 up:source unirule:MF_02039 .
_:719023 up:source unirule:MF_02039 .
_:719024 up:source unirule:MF_02039 .
_:719025 up:source unirule:MF_02039 .
_:719026 up:source unirule:MF_02039 .
_:719027 up:source unirule:MF_02039 .
_:719028 up:source unirule:MF_02039 .
_:719029 up:source unirule:MF_02039 .
_:719030 up:source unirule:MF_02039 .
_:719031 up:source unirule:MF_02039 .
_:719032 up:source unirule:MF_02039 .
_:719033 up:source unirule:MF_02039 .
_:719034 up:source unirule:MF_02039 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0005886 ,
GO:0032153 ,
GO:0043093 ,
GO:0090529 ,
keyword:1003 ,
keyword:1133 ,
keyword:131 ,
keyword:132 ,
keyword:472 ,
keyword:717 ,
keyword:812 ,
keyword:997 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Cell division protein FtsN' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'ftsN' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Essential cell division protein that activates septal peptidoglycan synthesis and constriction of the cell. Acts on both sides of the membrane, via interaction with FtsA in the cytoplasm and interaction with the FtsQBL complex in the periplasm. These interactions may induce a conformational switch in both FtsA and FtsQBL, leading to septal peptidoglycan synthesis by FtsI and associated synthases.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with FtsA via its N-terminal cytoplasmic domain.' .
?annotation4 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Localizes to the septum. Localizes to the midcell via interaction with the early cell division protein FtsA and via the periplasmic SPOR domain' .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the FtsN family.' .
?case7 up:classifiedWith keyword:1015 .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Mediates interaction with FtsA' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?sam20 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane21 faldo:begin ?transmembraneb22 ;
faldo:end ?transmembranee23 .
?transmembraneb22 faldo:position ?transmembranebp24 .
?transmembranee23 faldo:position ?transmembraneep25 .
?keyword26 up:range ?transmembrane21 .
?keyword27 up:range ?transmembrane21 .
?keyword28 up:range ?transmembrane21 .
_:719035 a rdf:Statement ;
up:attribution _:719011 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:719036 a rdf:Statement ;
up:attribution _:719012 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:719037 a rdf:Statement ;
up:attribution _:719013 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:719038 a rdf:Statement ;
up:attribution _:719014 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:719039 a rdf:Statement ;
up:attribution _:719015 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:719040 a rdf:Statement ;
up:attribution _:719016 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:719041 a rdf:Statement ;
up:attribution _:719017 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:131 .
_:719042 a rdf:Statement ;
up:attribution _:719018 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:132 .
_:719043 a rdf:Statement ;
up:attribution _:719019 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:719044 a rdf:Statement ;
up:attribution _:719020 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:719045 a rdf:Statement ;
up:attribution _:719021 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:719046 a rdf:Statement ;
up:attribution _:719022 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:717 .
_:719047 a rdf:Statement ;
up:attribution _:719023 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:719048 a rdf:Statement ;
up:attribution _:719024 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:719049 a rdf:Statement ;
up:attribution _:719025 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0090529 .
_:719050 a rdf:Statement ;
up:attribution _:719026 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043093 .
_:719051 a rdf:Statement ;
up:attribution _:719027 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0032153 .
_:719052 a rdf:Statement ;
up:attribution _:719028 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:719053 a rdf:Statement ;
up:attribution _:719029 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:719054 a rdf:Statement ;
up:source unirule:MF_02039 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:719055 a rdf:Statement ;
up:attribution _:719030 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:719056 a rdf:Statement ;
up:source unirule:MF_02039 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:719057 a rdf:Statement ;
up:attribution _:719031 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:719058 a rdf:Statement ;
up:attribution _:719032 ;
rdf:subject ?sam20 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:719059 a rdf:Statement ;
up:attribution _:719033 ;
rdf:subject ?sam20 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:719060 a rdf:Statement ;
up:attribution _:719034 ;
rdf:subject ?sam20 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02039
#Rule MF_02039 Created by:? on:2015-07-07 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02039 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_02039a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02039a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02039a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02039a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02039a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch33 faldo:location ?templateMotifSequenceMatchRegionP2913134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2913136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP29131MF_0203929 .
?templateMotifSequenceMatchRegionP2913134 faldo:begin ?templateMotifSequenceMatchBeginP2913135 .
?templateMotifSequenceMatchBeginP2913135 faldo:position ?templateMotifSequenceMatchBeginPositionP2913130 ;
faldo:reference isoform:P29131-1 .
?templateMotifSequenceProfileAlignmentOperationP2913136 edam:has_input signature:MF_02039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch37 faldo:location ?targetMotifMatchRegionMatch38 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0203940 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP29131MF_0203931 .
?targetMotifMatchRegionMatch38 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0203939 .
?targetMotifMatchRegionMatchBeginMF_0203939 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0203932 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0203940 edam:has_input signature:MF_02039 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagdisulfid) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP29131MF_0203929, 1, (STRLEN(?templateMotifCigarP29131MF_0203929) - STRLEN(REPLACE(?templateMotifCigarP29131MF_0203929, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionP2913130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP29131MF_0203931, 1, (STRLEN(?targetMotifMatchCigarP29131MF_0203931) - STRLEN(REPLACE(?targetMotifMatchCigarP29131MF_0203931, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP29131MF_0203931, 1, (STRLEN(?targetMotifMatchCigarP29131MF_0203931) - STRLEN(REPLACE(?targetMotifMatchCigarP29131MF_0203931, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), '')))), '[^-]', ''))) AS ?step242) .
BIND(((?step242 + ?targetMotifMatchRegionMatchBeginPositionMF_0203932) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP29131MF_0203929, 1, (STRLEN(?templateMotifCigarP29131MF_0203929) - STRLEN(REPLACE(?templateMotifCigarP29131MF_0203929, CONCAT('^(?:-*[^-]){', STR(((312 - ?templateMotifSequenceMatchBeginPositionP2913130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP29131MF_0203931, 1, (STRLEN(?targetMotifMatchCigarP29131MF_0203931) - STRLEN(REPLACE(?targetMotifMatchCigarP29131MF_0203931, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP29131MF_0203931, 1, (STRLEN(?targetMotifMatchCigarP29131MF_0203931) - STRLEN(REPLACE(?targetMotifMatchCigarP29131MF_0203931, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) .
BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0203932) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02039a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch50 faldo:location ?templateMotifSequenceMatchRegionP2913151 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2913153 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP29131MF_0203946 .
?templateMotifSequenceMatchRegionP2913151 faldo:begin ?templateMotifSequenceMatchBeginP2913152 .
?templateMotifSequenceMatchBeginP2913152 faldo:position ?templateMotifSequenceMatchBeginPositionP2913147 ;
faldo:reference isoform:P29131-1 .
?templateMotifSequenceProfileAlignmentOperationP2913153 edam:has_input signature:MF_02039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch54 faldo:location ?targetMotifMatchRegionMatch55 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0203957 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP29131MF_0203948 .
?targetMotifMatchRegionMatch55 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0203956 .
?targetMotifMatchRegionMatchBeginMF_0203956 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0203949 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0203957 edam:has_input signature:MF_02039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP29131MF_0203946, 1, (STRLEN(?templateMotifCigarP29131MF_0203946) - STRLEN(REPLACE(?templateMotifCigarP29131MF_0203946, CONCAT('^(?:-*[^-]){', STR(((4 - ?templateMotifSequenceMatchBeginPositionP2913147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP29131MF_0203948, 1, (STRLEN(?targetMotifMatchCigarP29131MF_0203948) - STRLEN(REPLACE(?targetMotifMatchCigarP29131MF_0203948, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP29131MF_0203948, 1, (STRLEN(?targetMotifMatchCigarP29131MF_0203948) - STRLEN(REPLACE(?targetMotifMatchCigarP29131MF_0203948, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0203949) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP29131MF_0203946, 1, (STRLEN(?templateMotifCigarP29131MF_0203946) - STRLEN(REPLACE(?templateMotifCigarP29131MF_0203946, CONCAT('^(?:-*[^-]){', STR(((6 - ?templateMotifSequenceMatchBeginPositionP2913147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP29131MF_0203948, 1, (STRLEN(?targetMotifMatchCigarP29131MF_0203948) - STRLEN(REPLACE(?targetMotifMatchCigarP29131MF_0203948, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP29131MF_0203948, 1, (STRLEN(?targetMotifMatchCigarP29131MF_0203948) - STRLEN(REPLACE(?targetMotifMatchCigarP29131MF_0203948, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0203949) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs2t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER (REGEX('[RK]DY', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02039a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag63) .
}
BIND(IF(BOUND(?tagdisulfid), ?caseWithTag63, ?UNBOUND_VARIABLE) AS ?case7) .
OPTIONAL {
?this up:annotation ?samtransmembrane64 ;
up:sequence ?thisSequence .
?samtransmembrane64 up:range ?samtransmembraner65 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner65 faldo:begin ?samtransmembraneb66 ;
faldo:end ?samtransmembranee67 .
?samtransmembraneb66 faldo:position ?samtransmembranebp68 ;
faldo:reference ?thisSequence .
?samtransmembranee67 faldo:position ?samtransmembraneep69 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam20) .
}
BIND(URI(CONCAT(STR(?this), '#MF_02039a26')) AS ?keyword26) .
BIND(URI(CONCAT(STR(?this), '#MF_02039a27')) AS ?keyword27) .
BIND(URI(CONCAT(STR(?this), '#MF_02039a28')) AS ?keyword28) .
}
"xsd:string |
