| http://purl.uniprot.org/unirules/MF_02055#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:726376 up:source unirule:MF_02055 .
_:726377 up:source unirule:MF_02055 .
_:726378 up:source unirule:MF_02055 .
_:726379 up:source unirule:MF_02055 .
_:726380 up:source unirule:MF_02055 .
_:726381 up:source unirule:MF_02055 .
_:726382 up:source unirule:MF_02055 .
_:726383 up:source unirule:MF_02055 .
_:726384 up:source unirule:MF_02055 .
_:726385 up:source unirule:MF_02055 .
_:726386 up:source unirule:MF_02055 .
_:726387 up:source unirule:MF_02055 .
_:726388 up:source unirule:MF_02055 .
_:726389 up:source unirule:MF_02055 .
_:726390 up:source unirule:MF_02055 .
_:726391 up:source unirule:MF_02055 .
_:726392 up:source unirule:MF_02055 .
_:726393 up:source unirule:MF_02055 .
_:726394 up:source unirule:MF_02055 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0005737 ,
GO:0006310 ,
GO:0006313 ,
GO:0009037 ,
keyword:229 ,
keyword:233 ,
keyword:238 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Tyrosine recombinase XerA' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'xerA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment "Belongs to the 'phage' integrase family. XerA subfamily." .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
rdf:type up:Active_Site_Annotation .
?pfsb8 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Active_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Active_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Active_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Active_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment "O-(3'-phospho-DNA)-tyrosine intermediate" .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
_:726395 a rdf:Statement ;
up:attribution _:726376 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:726396 a rdf:Statement ;
up:attribution _:726377 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:726397 a rdf:Statement ;
up:attribution _:726378 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:726398 a rdf:Statement ;
up:attribution _:726379 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:726399 a rdf:Statement ;
up:attribution _:726380 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:726400 a rdf:Statement ;
up:attribution _:726381 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:726401 a rdf:Statement ;
up:attribution _:726382 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:229 .
_:726402 a rdf:Statement ;
up:attribution _:726383 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:233 .
_:726403 a rdf:Statement ;
up:attribution _:726384 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:726404 a rdf:Statement ;
up:attribution _:726385 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009037 .
_:726405 a rdf:Statement ;
up:attribution _:726386 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006310 .
_:726406 a rdf:Statement ;
up:attribution _:726387 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006313 .
_:726407 a rdf:Statement ;
up:attribution _:726388 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:726408 a rdf:Statement ;
up:source unirule:MF_02055 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:726409 a rdf:Statement ;
up:attribution _:726389 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:726410 a rdf:Statement ;
up:source unirule:MF_02055 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:726411 a rdf:Statement ;
up:attribution _:726390 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:726412 a rdf:Statement ;
up:source unirule:MF_02055 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:726413 a rdf:Statement ;
up:attribution _:726391 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:726414 a rdf:Statement ;
up:source unirule:MF_02055 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:726415 a rdf:Statement ;
up:attribution _:726392 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:726416 a rdf:Statement ;
up:source unirule:MF_02055 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:726417 a rdf:Statement ;
up:attribution _:726393 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:726418 a rdf:Statement ;
up:source unirule:MF_02055 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:726419 a rdf:Statement ;
up:attribution _:726394 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02055
#Rule MF_02055 Created by:? on:2016-02-04 Modified by:Catherine Rivoire on:2023-03-27
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02055 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_02055a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02055a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02055a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02055a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch46 faldo:location ?templateMotifSequenceMatchRegionQ9V1P547 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V1P549 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V1P5MF_0205542 .
?templateMotifSequenceMatchRegionQ9V1P547 faldo:begin ?templateMotifSequenceMatchBeginQ9V1P548 .
?templateMotifSequenceMatchBeginQ9V1P548 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V1P543 ;
faldo:reference isoform:Q9V1P5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V1P549 edam:has_input signature:MF_02055 ;
rdf:type edam:operation_0300 .
?targetMotifMatch50 faldo:location ?targetMotifMatchRegionMatch51 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0205553 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V1P5MF_0205544 .
?targetMotifMatchRegionMatch51 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0205552 .
?targetMotifMatchRegionMatchBeginMF_0205552 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0205545 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0205553 edam:has_input signature:MF_02055 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V1P5MF_0205542, 1, (STRLEN(?templateMotifCigarQ9V1P5MF_0205542) - STRLEN(REPLACE(?templateMotifCigarQ9V1P5MF_0205542, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionQ9V1P543) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V1P5MF_0205544, 1, (STRLEN(?targetMotifMatchCigarQ9V1P5MF_0205544) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V1P5MF_0205544, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V1P5MF_0205544, 1, (STRLEN(?targetMotifMatchCigarQ9V1P5MF_0205544) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V1P5MF_0205544, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0205545) - 1) AS ?thisPositionOn10) .
BIND(?thisPositionOn10 AS ?thisPositionOn11) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn10, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02055a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionQ9V1P562 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V1P564 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V1P5MF_0205557 .
?templateMotifSequenceMatchRegionQ9V1P562 faldo:begin ?templateMotifSequenceMatchBeginQ9V1P563 .
?templateMotifSequenceMatchBeginQ9V1P563 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V1P558 ;
faldo:reference isoform:Q9V1P5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V1P564 edam:has_input signature:MF_02055 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0205568 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V1P5MF_0205559 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0205567 .
?targetMotifMatchRegionMatchBeginMF_0205567 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0205560 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0205568 edam:has_input signature:MF_02055 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V1P5MF_0205557, 1, (STRLEN(?templateMotifCigarQ9V1P5MF_0205557) - STRLEN(REPLACE(?templateMotifCigarQ9V1P5MF_0205557, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionQ9V1P558) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V1P5MF_0205559, 1, (STRLEN(?targetMotifMatchCigarQ9V1P5MF_0205559) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V1P5MF_0205559, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V1P5MF_0205559, 1, (STRLEN(?targetMotifMatchCigarQ9V1P5MF_0205559) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V1P5MF_0205559, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0205560) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02055a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionQ9V1P577 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V1P579 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V1P5MF_0205572 .
?templateMotifSequenceMatchRegionQ9V1P577 faldo:begin ?templateMotifSequenceMatchBeginQ9V1P578 .
?templateMotifSequenceMatchBeginQ9V1P578 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V1P573 ;
faldo:reference isoform:Q9V1P5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V1P579 edam:has_input signature:MF_02055 ;
rdf:type edam:operation_0300 .
?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0205583 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V1P5MF_0205574 .
?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0205582 .
?targetMotifMatchRegionMatchBeginMF_0205582 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0205575 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0205583 edam:has_input signature:MF_02055 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V1P5MF_0205572, 1, (STRLEN(?templateMotifCigarQ9V1P5MF_0205572) - STRLEN(REPLACE(?templateMotifCigarQ9V1P5MF_0205572, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionQ9V1P573) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V1P5MF_0205574, 1, (STRLEN(?targetMotifMatchCigarQ9V1P5MF_0205574) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V1P5MF_0205574, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V1P5MF_0205574, 1, (STRLEN(?targetMotifMatchCigarQ9V1P5MF_0205574) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V1P5MF_0205574, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0205575) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02055a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionQ9V1P592 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V1P594 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V1P5MF_0205587 .
?templateMotifSequenceMatchRegionQ9V1P592 faldo:begin ?templateMotifSequenceMatchBeginQ9V1P593 .
?templateMotifSequenceMatchBeginQ9V1P593 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V1P588 ;
faldo:reference isoform:Q9V1P5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V1P594 edam:has_input signature:MF_02055 ;
rdf:type edam:operation_0300 .
?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0205598 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V1P5MF_0205589 .
?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0205597 .
?targetMotifMatchRegionMatchBeginMF_0205597 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0205590 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0205598 edam:has_input signature:MF_02055 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V1P5MF_0205587, 1, (STRLEN(?templateMotifCigarQ9V1P5MF_0205587) - STRLEN(REPLACE(?templateMotifCigarQ9V1P5MF_0205587, CONCAT('^(?:-*[^-]){', STR(((229 - ?templateMotifSequenceMatchBeginPositionQ9V1P588) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V1P5MF_0205589, 1, (STRLEN(?targetMotifMatchCigarQ9V1P5MF_0205589) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V1P5MF_0205589, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V1P5MF_0205589, 1, (STRLEN(?targetMotifMatchCigarQ9V1P5MF_0205589) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V1P5MF_0205589, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0205590) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02055a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionQ9V1P5107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V1P5109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V1P5MF_02055102 .
?templateMotifSequenceMatchRegionQ9V1P5107 faldo:begin ?templateMotifSequenceMatchBeginQ9V1P5108 .
?templateMotifSequenceMatchBeginQ9V1P5108 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V1P5103 ;
faldo:reference isoform:Q9V1P5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V1P5109 edam:has_input signature:MF_02055 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02055113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V1P5MF_02055104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02055112 .
?targetMotifMatchRegionMatchBeginMF_02055112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02055105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02055113 edam:has_input signature:MF_02055 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V1P5MF_02055102, 1, (STRLEN(?templateMotifCigarQ9V1P5MF_02055102) - STRLEN(REPLACE(?templateMotifCigarQ9V1P5MF_02055102, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionQ9V1P5103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V1P5MF_02055104, 1, (STRLEN(?targetMotifMatchCigarQ9V1P5MF_02055104) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V1P5MF_02055104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V1P5MF_02055104, 1, (STRLEN(?targetMotifMatchCigarQ9V1P5MF_02055104) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V1P5MF_02055104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_02055105) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02055a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionQ9V1P5122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V1P5124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V1P5MF_02055117 .
?templateMotifSequenceMatchRegionQ9V1P5122 faldo:begin ?templateMotifSequenceMatchBeginQ9V1P5123 .
?templateMotifSequenceMatchBeginQ9V1P5123 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V1P5118 ;
faldo:reference isoform:Q9V1P5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V1P5124 edam:has_input signature:MF_02055 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02055128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V1P5MF_02055119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02055127 .
?targetMotifMatchRegionMatchBeginMF_02055127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02055120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02055128 edam:has_input signature:MF_02055 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V1P5MF_02055117, 1, (STRLEN(?templateMotifCigarQ9V1P5MF_02055117) - STRLEN(REPLACE(?templateMotifCigarQ9V1P5MF_02055117, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionQ9V1P5118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V1P5MF_02055119, 1, (STRLEN(?targetMotifMatchCigarQ9V1P5MF_02055119) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V1P5MF_02055119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V1P5MF_02055119, 1, (STRLEN(?targetMotifMatchCigarQ9V1P5MF_02055119) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V1P5MF_02055119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_02055120) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02055a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
}
"xsd:string |
