| http://purl.uniprot.org/unirules/MF_02057#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:727025 up:source unirule:MF_02057 .
_:727026 up:source unirule:MF_02057 .
_:727027 up:source unirule:MF_02057 .
_:727028 up:source unirule:MF_02057 .
_:727029 up:source unirule:MF_02057 .
_:727030 up:source unirule:MF_02057 .
_:727031 up:source unirule:MF_02057 .
_:727032 up:source unirule:MF_02057 .
_:727033 up:source unirule:MF_02057 .
_:727034 up:source unirule:MF_02057 .
_:727035 up:source unirule:MF_02057 .
_:727036 up:source unirule:MF_02057 .
_:727037 up:source unirule:MF_02057 .
_:727038 up:source unirule:MF_02057 .
_:727039 up:source unirule:MF_02057 .
_:727040 up:source unirule:MF_02057 .
_:727041 up:source unirule:MF_02057 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0006400 ,
GO:0097697 ,
keyword:489 ,
keyword:808 ,
keyword:819 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.-' ;
up:fullName 'tRNA 5-carboxymethoxyuridine methyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'cmo5U methyltransferase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'cmoM' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:59789 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:59789 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:59789 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:59789 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:59789 .
_:727042 a rdf:Statement ;
up:attribution _:727025 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:727043 a rdf:Statement ;
up:attribution _:727026 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:727044 a rdf:Statement ;
up:attribution _:727027 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:727045 a rdf:Statement ;
up:attribution _:727028 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:727046 a rdf:Statement ;
up:attribution _:727029 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:727047 a rdf:Statement ;
up:attribution _:727030 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:727048 a rdf:Statement ;
up:attribution _:727031 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:727049 a rdf:Statement ;
up:attribution _:727032 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:727050 a rdf:Statement ;
up:attribution _:727033 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:727051 a rdf:Statement ;
up:attribution _:727034 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:727052 a rdf:Statement ;
up:attribution _:727035 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0097697 .
_:727053 a rdf:Statement ;
up:attribution _:727036 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006400 .
_:727054 a rdf:Statement ;
up:source unirule:MF_02057 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:727055 a rdf:Statement ;
up:attribution _:727037 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:727056 a rdf:Statement ;
up:source unirule:MF_02057 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:727057 a rdf:Statement ;
up:attribution _:727038 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:727058 a rdf:Statement ;
up:source unirule:MF_02057 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:727059 a rdf:Statement ;
up:attribution _:727039 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:727060 a rdf:Statement ;
up:source unirule:MF_02057 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:727061 a rdf:Statement ;
up:attribution _:727040 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:727062 a rdf:Statement ;
up:source unirule:MF_02057 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:727063 a rdf:Statement ;
up:attribution _:727041 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02057
#Rule MF_02057 Created by:? on:2016-03-08 Modified by:Catherine Rivoire on:2023-10-13
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02057 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_02057a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02057a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02057a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02057a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02057a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch46 faldo:location ?templateMotifSequenceMatchRegionQ8XDG347 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8XDG349 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8XDG3MF_0205742 .
?templateMotifSequenceMatchRegionQ8XDG347 faldo:begin ?templateMotifSequenceMatchBeginQ8XDG348 .
?templateMotifSequenceMatchBeginQ8XDG348 faldo:position ?templateMotifSequenceMatchBeginPositionQ8XDG343 ;
faldo:reference isoform:Q8XDG3-1 .
?templateMotifSequenceProfileAlignmentOperationQ8XDG349 edam:has_input signature:MF_02057 ;
rdf:type edam:operation_0300 .
?targetMotifMatch50 faldo:location ?targetMotifMatchRegionMatch51 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0205753 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8XDG3MF_0205744 .
?targetMotifMatchRegionMatch51 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0205752 .
?targetMotifMatchRegionMatchBeginMF_0205752 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0205745 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0205753 edam:has_input signature:MF_02057 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8XDG3MF_0205742, 1, (STRLEN(?templateMotifCigarQ8XDG3MF_0205742) - STRLEN(REPLACE(?templateMotifCigarQ8XDG3MF_0205742, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionQ8XDG343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205744, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205744) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205744, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205744, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205744) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205744, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0205745) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8XDG3MF_0205742, 1, (STRLEN(?templateMotifCigarQ8XDG3MF_0205742) - STRLEN(REPLACE(?templateMotifCigarQ8XDG3MF_0205742, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionQ8XDG343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205744, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205744) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205744, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205744, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205744) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205744, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0205745) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER (REGEX('G[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02057a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionQ8XDG364 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8XDG366 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8XDG3MF_0205759 .
?templateMotifSequenceMatchRegionQ8XDG364 faldo:begin ?templateMotifSequenceMatchBeginQ8XDG365 .
?templateMotifSequenceMatchBeginQ8XDG365 faldo:position ?templateMotifSequenceMatchBeginPositionQ8XDG360 ;
faldo:reference isoform:Q8XDG3-1 .
?templateMotifSequenceProfileAlignmentOperationQ8XDG366 edam:has_input signature:MF_02057 ;
rdf:type edam:operation_0300 .
?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0205770 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8XDG3MF_0205761 .
?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0205769 .
?targetMotifMatchRegionMatchBeginMF_0205769 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0205762 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0205770 edam:has_input signature:MF_02057 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8XDG3MF_0205759, 1, (STRLEN(?templateMotifCigarQ8XDG3MF_0205759) - STRLEN(REPLACE(?templateMotifCigarQ8XDG3MF_0205759, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionQ8XDG360) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205761, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205761) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205761, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205761, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205761) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205761, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0205762) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8XDG3MF_0205759, 1, (STRLEN(?templateMotifCigarQ8XDG3MF_0205759) - STRLEN(REPLACE(?templateMotifCigarQ8XDG3MF_0205759, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionQ8XDG360) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205761, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205761) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205761, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205761, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205761) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205761, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0205762) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)) = 'AQ')) .
BIND(URI(CONCAT(STR(?this), '#MF_02057a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionQ8XDG381 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8XDG383 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8XDG3MF_0205776 .
?templateMotifSequenceMatchRegionQ8XDG381 faldo:begin ?templateMotifSequenceMatchBeginQ8XDG382 .
?templateMotifSequenceMatchBeginQ8XDG382 faldo:position ?templateMotifSequenceMatchBeginPositionQ8XDG377 ;
faldo:reference isoform:Q8XDG3-1 .
?templateMotifSequenceProfileAlignmentOperationQ8XDG383 edam:has_input signature:MF_02057 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0205787 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8XDG3MF_0205778 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0205786 .
?targetMotifMatchRegionMatchBeginMF_0205786 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0205779 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0205787 edam:has_input signature:MF_02057 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8XDG3MF_0205776, 1, (STRLEN(?templateMotifCigarQ8XDG3MF_0205776) - STRLEN(REPLACE(?templateMotifCigarQ8XDG3MF_0205776, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionQ8XDG377) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205778, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205778) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205778, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205778, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205778) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205778, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0205779) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02057a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionQ8XDG396 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8XDG398 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8XDG3MF_0205791 .
?templateMotifSequenceMatchRegionQ8XDG396 faldo:begin ?templateMotifSequenceMatchBeginQ8XDG397 .
?templateMotifSequenceMatchBeginQ8XDG397 faldo:position ?templateMotifSequenceMatchBeginPositionQ8XDG392 ;
faldo:reference isoform:Q8XDG3-1 .
?templateMotifSequenceProfileAlignmentOperationQ8XDG398 edam:has_input signature:MF_02057 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02057102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8XDG3MF_0205793 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02057101 .
?targetMotifMatchRegionMatchBeginMF_02057101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0205794 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02057102 edam:has_input signature:MF_02057 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8XDG3MF_0205791, 1, (STRLEN(?templateMotifCigarQ8XDG3MF_0205791) - STRLEN(REPLACE(?templateMotifCigarQ8XDG3MF_0205791, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionQ8XDG392) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205793, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205793) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205793, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_0205793, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_0205793) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_0205793, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0205794) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02057a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionQ8XDG3111 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8XDG3113 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8XDG3MF_02057106 .
?templateMotifSequenceMatchRegionQ8XDG3111 faldo:begin ?templateMotifSequenceMatchBeginQ8XDG3112 .
?templateMotifSequenceMatchBeginQ8XDG3112 faldo:position ?templateMotifSequenceMatchBeginPositionQ8XDG3107 ;
faldo:reference isoform:Q8XDG3-1 .
?templateMotifSequenceProfileAlignmentOperationQ8XDG3113 edam:has_input signature:MF_02057 ;
rdf:type edam:operation_0300 .
?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02057117 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8XDG3MF_02057108 .
?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02057116 .
?targetMotifMatchRegionMatchBeginMF_02057116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02057109 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02057117 edam:has_input signature:MF_02057 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8XDG3MF_02057106, 1, (STRLEN(?templateMotifCigarQ8XDG3MF_02057106) - STRLEN(REPLACE(?templateMotifCigarQ8XDG3MF_02057106, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionQ8XDG3107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_02057108, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_02057108) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_02057108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8XDG3MF_02057108, 1, (STRLEN(?targetMotifMatchCigarQ8XDG3MF_02057108) - STRLEN(REPLACE(?targetMotifMatchCigarQ8XDG3MF_02057108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_02057109) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02057a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
}
"xsd:string |
