| http://purl.uniprot.org/unirules/MF_02207#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:761363 up:source unirule:MF_02207 .
_:761364 up:source unirule:MF_02207 .
_:761365 up:source unirule:MF_02207 .
_:761366 up:source unirule:MF_02207 .
_:761367 up:source unirule:MF_02207 .
_:761368 up:source unirule:MF_02207 .
_:761369 up:source unirule:MF_02207 .
_:761370 up:source unirule:MF_02207 .
_:761371 up:source unirule:MF_02207 .
_:761372 up:source unirule:MF_02207 .
_:761373 up:source unirule:MF_02207 .
_:761374 up:source unirule:MF_02207 .
_:761375 up:source unirule:MF_02207 .
_:761376 up:source unirule:MF_02207 .
_:761377 up:source unirule:MF_02207 .
_:761378 up:source unirule:MF_02207 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0005737 ,
GO:0008360 ,
keyword:133 ,
keyword:547 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Cell shape-determining protein MreB' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'mreB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Forms membrane-associated dynamic filaments that are essential for cell shape determination. Acts by regulating cell wall synthesis and cell elongation, and thus cell shape. A feedback loop between cell geometry and MreB localization may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Forms polymers.' .
?annotation4 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Membrane-associated' .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the FtsA/MreB family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:30616 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:30616 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:30616 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:30616 .
_:761379 a rdf:Statement ;
up:attribution _:761363 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:761380 a rdf:Statement ;
up:attribution _:761364 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:761381 a rdf:Statement ;
up:attribution _:761365 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:761382 a rdf:Statement ;
up:attribution _:761366 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:761383 a rdf:Statement ;
up:attribution _:761367 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:761384 a rdf:Statement ;
up:attribution _:761368 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:761385 a rdf:Statement ;
up:attribution _:761369 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:761386 a rdf:Statement ;
up:attribution _:761370 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:133 .
_:761387 a rdf:Statement ;
up:attribution _:761371 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:761388 a rdf:Statement ;
up:attribution _:761372 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:761389 a rdf:Statement ;
up:attribution _:761373 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:761390 a rdf:Statement ;
up:attribution _:761374 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008360 .
_:761391 a rdf:Statement ;
up:source unirule:MF_02207 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:761392 a rdf:Statement ;
up:attribution _:761375 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:761393 a rdf:Statement ;
up:source unirule:MF_02207 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:761394 a rdf:Statement ;
up:attribution _:761376 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:761395 a rdf:Statement ;
up:source unirule:MF_02207 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:761396 a rdf:Statement ;
up:attribution _:761377 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:761397 a rdf:Statement ;
up:source unirule:MF_02207 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:761398 a rdf:Statement ;
up:attribution _:761378 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02207
#Rule MF_02207 Created by:? on:2018-10-05 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon35 {taxon:2157 taxon:2}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02207 .
?thisOrganism rdfs:subClassOf+ ?supertaxon35 .
BIND(URI(CONCAT(STR(?this), '#MF_02207a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02207a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02207a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02207a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02207a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionA0A0H3C7V441 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0H3C7V443 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0H3C7V4MF_0220736 .
?templateMotifSequenceMatchRegionA0A0H3C7V441 faldo:begin ?templateMotifSequenceMatchBeginA0A0H3C7V442 .
?templateMotifSequenceMatchBeginA0A0H3C7V442 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0H3C7V437 ;
faldo:reference isoform:A0A0H3C7V4-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0H3C7V443 edam:has_input signature:MF_02207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0220747 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0H3C7V4MF_0220738 .
?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0220746 .
?targetMotifMatchRegionMatchBeginMF_0220746 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0220739 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0220747 edam:has_input signature:MF_02207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3C7V4MF_0220736, 1, (STRLEN(?templateMotifCigarA0A0H3C7V4MF_0220736) - STRLEN(REPLACE(?templateMotifCigarA0A0H3C7V4MF_0220736, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionA0A0H3C7V437) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220738, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220738) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220738, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220738) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0220739) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3C7V4MF_0220736, 1, (STRLEN(?templateMotifCigarA0A0H3C7V4MF_0220736) - STRLEN(REPLACE(?templateMotifCigarA0A0H3C7V4MF_0220736, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionA0A0H3C7V437) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220738, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220738) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220738, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220738) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220738, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0220739) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)) = 'TAN')) .
BIND(URI(CONCAT(STR(?this), '#MF_02207a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionA0A0H3C7V458 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0H3C7V460 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0H3C7V4MF_0220753 .
?templateMotifSequenceMatchRegionA0A0H3C7V458 faldo:begin ?templateMotifSequenceMatchBeginA0A0H3C7V459 .
?templateMotifSequenceMatchBeginA0A0H3C7V459 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0H3C7V454 ;
faldo:reference isoform:A0A0H3C7V4-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0H3C7V460 edam:has_input signature:MF_02207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0220764 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0H3C7V4MF_0220755 .
?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0220763 .
?targetMotifMatchRegionMatchBeginMF_0220763 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0220756 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0220764 edam:has_input signature:MF_02207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3C7V4MF_0220753, 1, (STRLEN(?templateMotifCigarA0A0H3C7V4MF_0220753) - STRLEN(REPLACE(?templateMotifCigarA0A0H3C7V4MF_0220753, CONCAT('^(?:-*[^-]){', STR(((165 - ?templateMotifSequenceMatchBeginPositionA0A0H3C7V454) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220755, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220755) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220755, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220755, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220755) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220755, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0220756) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3C7V4MF_0220753, 1, (STRLEN(?templateMotifCigarA0A0H3C7V4MF_0220753) - STRLEN(REPLACE(?templateMotifCigarA0A0H3C7V4MF_0220753, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionA0A0H3C7V454) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220755, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220755) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220755, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220755, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220755) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220755, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0220756) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER (REGEX('[GA][GA][TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02207a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch74 faldo:location ?templateMotifSequenceMatchRegionA0A0H3C7V475 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0H3C7V477 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0H3C7V4MF_0220770 .
?templateMotifSequenceMatchRegionA0A0H3C7V475 faldo:begin ?templateMotifSequenceMatchBeginA0A0H3C7V476 .
?templateMotifSequenceMatchBeginA0A0H3C7V476 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0H3C7V471 ;
faldo:reference isoform:A0A0H3C7V4-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0H3C7V477 edam:has_input signature:MF_02207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch78 faldo:location ?targetMotifMatchRegionMatch79 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0220781 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0H3C7V4MF_0220772 .
?targetMotifMatchRegionMatch79 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0220780 .
?targetMotifMatchRegionMatchBeginMF_0220780 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0220773 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0220781 edam:has_input signature:MF_02207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3C7V4MF_0220770, 1, (STRLEN(?templateMotifCigarA0A0H3C7V4MF_0220770) - STRLEN(REPLACE(?templateMotifCigarA0A0H3C7V4MF_0220770, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionA0A0H3C7V471) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220772, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220772) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220772, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220772, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220772) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220772, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0220773) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3C7V4MF_0220770, 1, (STRLEN(?templateMotifCigarA0A0H3C7V4MF_0220770) - STRLEN(REPLACE(?templateMotifCigarA0A0H3C7V4MF_0220770, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionA0A0H3C7V471) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220772, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220772) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220772, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220772, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220772) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220772, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0220773) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER (REGEX('[ED][ARNDCQEGHILKMFPSTWYVBZJUOX][IVLM]K', SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02207a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionA0A0H3C7V492 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0H3C7V494 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0H3C7V4MF_0220787 .
?templateMotifSequenceMatchRegionA0A0H3C7V492 faldo:begin ?templateMotifSequenceMatchBeginA0A0H3C7V493 .
?templateMotifSequenceMatchBeginA0A0H3C7V493 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0H3C7V488 ;
faldo:reference isoform:A0A0H3C7V4-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0H3C7V494 edam:has_input signature:MF_02207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0220798 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0H3C7V4MF_0220789 .
?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0220797 .
?targetMotifMatchRegionMatchBeginMF_0220797 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0220790 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0220798 edam:has_input signature:MF_02207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3C7V4MF_0220787, 1, (STRLEN(?templateMotifCigarA0A0H3C7V4MF_0220787) - STRLEN(REPLACE(?templateMotifCigarA0A0H3C7V4MF_0220787, CONCAT('^(?:-*[^-]){', STR(((295 - ?templateMotifSequenceMatchBeginPositionA0A0H3C7V488) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220789, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220789) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220789, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220789, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220789) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220789, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0220790) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3C7V4MF_0220787, 1, (STRLEN(?templateMotifCigarA0A0H3C7V4MF_0220787) - STRLEN(REPLACE(?templateMotifCigarA0A0H3C7V4MF_0220787, CONCAT('^(?:-*[^-]){', STR(((298 - ?templateMotifSequenceMatchBeginPositionA0A0H3C7V488) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220789, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220789) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220789, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3C7V4MF_0220789, 1, (STRLEN(?targetMotifMatchCigarA0A0H3C7V4MF_0220789) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3C7V4MF_0220789, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0220790) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER (REGEX('G[GAS][AGS]L', SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02207a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
}
"xsd:string |
