| http://purl.uniprot.org/unirules/MF_02210#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:762382 up:source unirule:MF_02210 .
_:762383 up:source unirule:MF_02210 .
_:762384 up:source unirule:MF_02210 .
_:762385 up:source unirule:MF_02210 .
_:762386 up:source unirule:MF_02210 .
_:762387 up:source unirule:MF_02210 .
_:762388 up:source unirule:MF_02210 .
_:762389 up:source unirule:MF_02210 .
_:762390 up:source unirule:MF_02210 .
_:762391 up:source unirule:MF_02210 .
_:762392 up:source unirule:MF_02210 .
_:762393 up:source unirule:MF_02210 .
_:762394 up:source unirule:MF_02210 .
_:762395 up:source unirule:MF_02210 .
_:762396 up:source unirule:MF_02210 .
_:762397 up:source unirule:MF_02210 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0005737 ,
GO:0008999 ,
keyword:12 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.266' ;
up:fullName '[Ribosomal protein bS18]-alanine N-acetyltransferase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'rimI' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Acetylates the N-terminal alanine of ribosomal protein bS18.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the acetyltransferase family. RimI subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:57288 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:57288 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:57288 .
_:762398 a rdf:Statement ;
up:attribution _:762382 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:762399 a rdf:Statement ;
up:attribution _:762383 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:762400 a rdf:Statement ;
up:attribution _:762384 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:762401 a rdf:Statement ;
up:attribution _:762385 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:762402 a rdf:Statement ;
up:attribution _:762386 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:762403 a rdf:Statement ;
up:attribution _:762387 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:762404 a rdf:Statement ;
up:attribution _:762388 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:762405 a rdf:Statement ;
up:attribution _:762389 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:762406 a rdf:Statement ;
up:attribution _:762390 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:762407 a rdf:Statement ;
up:attribution _:762391 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008999 .
_:762408 a rdf:Statement ;
up:attribution _:762392 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:762409 a rdf:Statement ;
up:source unirule:MF_02210 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:762410 a rdf:Statement ;
up:attribution _:762393 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:762411 a rdf:Statement ;
up:source unirule:MF_02210 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:762412 a rdf:Statement ;
up:attribution _:762394 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:762413 a rdf:Statement ;
up:source unirule:MF_02210 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:762414 a rdf:Statement ;
up:attribution _:762395 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:762415 a rdf:Statement ;
up:source unirule:MF_02210 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:762416 a rdf:Statement ;
up:attribution _:762396 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:762417 a rdf:Statement ;
up:source unirule:MF_02210 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:762418 a rdf:Statement ;
up:attribution _:762397 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02210
#Rule MF_02210 Created by:? on:2019-02-08 Modified by:Catherine Rivoire on:2025-03-21
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02210 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_02210a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02210a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02210a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02210a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02210a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionQ8ZJW446 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZJW448 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZJW4MF_0221041 .
?templateMotifSequenceMatchRegionQ8ZJW446 faldo:begin ?templateMotifSequenceMatchBeginQ8ZJW447 .
?templateMotifSequenceMatchBeginQ8ZJW447 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZJW442 ;
faldo:reference isoform:Q8ZJW4-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZJW448 edam:has_input signature:MF_02210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0221052 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZJW4MF_0221043 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0221051 .
?targetMotifMatchRegionMatchBeginMF_0221051 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0221044 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0221052 edam:has_input signature:MF_02210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZJW4MF_0221041, 1, (STRLEN(?templateMotifCigarQ8ZJW4MF_0221041) - STRLEN(REPLACE(?templateMotifCigarQ8ZJW4MF_0221041, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionQ8ZJW442) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZJW4MF_0221043, 1, (STRLEN(?targetMotifMatchCigarQ8ZJW4MF_0221043) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZJW4MF_0221043, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZJW4MF_0221043, 1, (STRLEN(?targetMotifMatchCigarQ8ZJW4MF_0221043) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZJW4MF_0221043, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0221044) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZJW4MF_0221041, 1, (STRLEN(?templateMotifCigarQ8ZJW4MF_0221041) - STRLEN(REPLACE(?templateMotifCigarQ8ZJW4MF_0221041, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionQ8ZJW442) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZJW4MF_0221043, 1, (STRLEN(?targetMotifMatchCigarQ8ZJW4MF_0221043) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZJW4MF_0221043, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZJW4MF_0221043, 1, (STRLEN(?targetMotifMatchCigarQ8ZJW4MF_0221043) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZJW4MF_0221043, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0221044) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('[ILVM][AG][VI]', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02210a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionQ8ZJW463 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZJW465 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZJW4MF_0221058 .
?templateMotifSequenceMatchRegionQ8ZJW463 faldo:begin ?templateMotifSequenceMatchBeginQ8ZJW464 .
?templateMotifSequenceMatchBeginQ8ZJW464 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZJW459 ;
faldo:reference isoform:Q8ZJW4-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZJW465 edam:has_input signature:MF_02210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0221069 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZJW4MF_0221060 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0221068 .
?targetMotifMatchRegionMatchBeginMF_0221068 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0221061 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0221069 edam:has_input signature:MF_02210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZJW4MF_0221058, 1, (STRLEN(?templateMotifCigarQ8ZJW4MF_0221058) - STRLEN(REPLACE(?templateMotifCigarQ8ZJW4MF_0221058, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionQ8ZJW459) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZJW4MF_0221060, 1, (STRLEN(?targetMotifMatchCigarQ8ZJW4MF_0221060) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZJW4MF_0221060, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZJW4MF_0221060, 1, (STRLEN(?targetMotifMatchCigarQ8ZJW4MF_0221060) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZJW4MF_0221060, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0221061) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZJW4MF_0221058, 1, (STRLEN(?templateMotifCigarQ8ZJW4MF_0221058) - STRLEN(REPLACE(?templateMotifCigarQ8ZJW4MF_0221058, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionQ8ZJW459) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZJW4MF_0221060, 1, (STRLEN(?targetMotifMatchCigarQ8ZJW4MF_0221060) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZJW4MF_0221060, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZJW4MF_0221060, 1, (STRLEN(?targetMotifMatchCigarQ8ZJW4MF_0221060) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZJW4MF_0221060, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0221061) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('[RK][RK]G[ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02210a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionQ8ZJW480 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZJW482 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZJW4MF_0221075 .
?templateMotifSequenceMatchRegionQ8ZJW480 faldo:begin ?templateMotifSequenceMatchBeginQ8ZJW481 .
?templateMotifSequenceMatchBeginQ8ZJW481 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZJW476 ;
faldo:reference isoform:Q8ZJW4-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZJW482 edam:has_input signature:MF_02210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0221086 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZJW4MF_0221077 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0221085 .
?targetMotifMatchRegionMatchBeginMF_0221085 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0221078 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0221086 edam:has_input signature:MF_02210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZJW4MF_0221075, 1, (STRLEN(?templateMotifCigarQ8ZJW4MF_0221075) - STRLEN(REPLACE(?templateMotifCigarQ8ZJW4MF_0221075, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionQ8ZJW476) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZJW4MF_0221077, 1, (STRLEN(?targetMotifMatchCigarQ8ZJW4MF_0221077) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZJW4MF_0221077, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZJW4MF_0221077, 1, (STRLEN(?targetMotifMatchCigarQ8ZJW4MF_0221077) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZJW4MF_0221077, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0221078) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02210a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionQ8ZJW495 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZJW497 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZJW4MF_0221090 .
?templateMotifSequenceMatchRegionQ8ZJW495 faldo:begin ?templateMotifSequenceMatchBeginQ8ZJW496 .
?templateMotifSequenceMatchBeginQ8ZJW496 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZJW491 ;
faldo:reference isoform:Q8ZJW4-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZJW497 edam:has_input signature:MF_02210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02210101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZJW4MF_0221092 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02210100 .
?targetMotifMatchRegionMatchBeginMF_02210100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0221093 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02210101 edam:has_input signature:MF_02210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZJW4MF_0221090, 1, (STRLEN(?templateMotifCigarQ8ZJW4MF_0221090) - STRLEN(REPLACE(?templateMotifCigarQ8ZJW4MF_0221090, CONCAT('^(?:-*[^-]){', STR(((115 - ?templateMotifSequenceMatchBeginPositionQ8ZJW491) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZJW4MF_0221092, 1, (STRLEN(?targetMotifMatchCigarQ8ZJW4MF_0221092) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZJW4MF_0221092, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZJW4MF_0221092, 1, (STRLEN(?targetMotifMatchCigarQ8ZJW4MF_0221092) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZJW4MF_0221092, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0221093) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02210a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionQ8ZJW4110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZJW4112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZJW4MF_02210105 .
?templateMotifSequenceMatchRegionQ8ZJW4110 faldo:begin ?templateMotifSequenceMatchBeginQ8ZJW4111 .
?templateMotifSequenceMatchBeginQ8ZJW4111 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZJW4106 ;
faldo:reference isoform:Q8ZJW4-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZJW4112 edam:has_input signature:MF_02210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02210116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZJW4MF_02210107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02210115 .
?targetMotifMatchRegionMatchBeginMF_02210115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02210108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02210116 edam:has_input signature:MF_02210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZJW4MF_02210105, 1, (STRLEN(?templateMotifCigarQ8ZJW4MF_02210105) - STRLEN(REPLACE(?templateMotifCigarQ8ZJW4MF_02210105, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionQ8ZJW4106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZJW4MF_02210107, 1, (STRLEN(?targetMotifMatchCigarQ8ZJW4MF_02210107) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZJW4MF_02210107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZJW4MF_02210107, 1, (STRLEN(?targetMotifMatchCigarQ8ZJW4MF_02210107) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZJW4MF_02210107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_02210108) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_02210a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
}
"xsd:string |
