| http://purl.uniprot.org/unirules/MF_02236#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:773052 up:source unirule:MF_02236 .
_:773053 up:source unirule:MF_02236 .
_:773054 up:source unirule:MF_02236 .
_:773055 up:source unirule:MF_02236 .
_:773056 up:source unirule:MF_02236 .
_:773057 up:source unirule:MF_02236 .
_:773058 up:source unirule:MF_02236 .
_:773059 up:source unirule:MF_02236 .
_:773060 up:source unirule:MF_02236 .
_:773061 up:source unirule:MF_02236 .
_:773062 up:source unirule:MF_02236 .
_:773063 up:source unirule:MF_02236 .
_:773064 up:source unirule:MF_02236 .
_:773065 up:source unirule:MF_02236 .
_:773066 up:source unirule:MF_02236 .
_:773067 up:source unirule:MF_02236 .
_:773068 up:source unirule:MF_02236 .
_:773069 up:source unirule:MF_02236 .
_:773070 up:source unirule:MF_02236 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0006526 ,
GO:0016811 ,
GO:0050897 ,
keyword:170 ,
keyword:28 ,
keyword:378 ,
keyword:479 ,
keyword:55 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.1.-' ;
up:fullName 'N-acetyl-L-citrulline deacetylase' ;
up:shortName 'ACDase' ,
'Acetylcitrulline deacetylase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel "argE'" .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the deacetylation of N-acetyl-L-citrulline to produce L-citrulline. This is a step in an alternative arginine biosynthesis pathway.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 up:cofactor chebi:48828 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Co(2+) ion per subunit.' .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase M20A family. N-acetylcitrulline deacetylase subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:48828 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:48828 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:48828 .
_:773071 a rdf:Statement ;
up:attribution _:773052 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:773072 a rdf:Statement ;
up:attribution _:773053 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:773073 a rdf:Statement ;
up:attribution _:773054 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:773074 a rdf:Statement ;
up:attribution _:773055 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:773075 a rdf:Statement ;
up:attribution _:773056 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:773076 a rdf:Statement ;
up:attribution _:773057 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:773077 a rdf:Statement ;
up:attribution _:773058 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:773078 a rdf:Statement ;
up:attribution _:773059 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:773079 a rdf:Statement ;
up:attribution _:773060 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:55 .
_:773080 a rdf:Statement ;
up:attribution _:773061 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:170 .
_:773081 a rdf:Statement ;
up:attribution _:773062 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:773082 a rdf:Statement ;
up:attribution _:773063 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:773083 a rdf:Statement ;
up:attribution _:773064 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016811 .
_:773084 a rdf:Statement ;
up:attribution _:773065 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050897 .
_:773085 a rdf:Statement ;
up:attribution _:773066 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006526 .
_:773086 a rdf:Statement ;
up:source unirule:MF_02236 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:773087 a rdf:Statement ;
up:attribution _:773067 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:773088 a rdf:Statement ;
up:source unirule:MF_02236 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:773089 a rdf:Statement ;
up:attribution _:773068 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:773090 a rdf:Statement ;
up:source unirule:MF_02236 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:773091 a rdf:Statement ;
up:attribution _:773069 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:773092 a rdf:Statement ;
up:source unirule:MF_02236 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:773093 a rdf:Statement ;
up:attribution _:773070 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02236
#Rule MF_02236 Created by:? on:2019-10-16 Modified by:Catherine Rivoire on:2024-11-05
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02236 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_02236a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02236a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02236a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02236a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02236a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02236a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionQ8P8J540 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J542 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J5MF_0223635 .
?templateMotifSequenceMatchRegionQ8P8J540 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J541 .
?templateMotifSequenceMatchBeginQ8P8J541 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J536 ;
faldo:reference isoform:Q8P8J5-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J542 edam:has_input signature:MF_02236 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0223646 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J5MF_0223637 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0223645 .
?targetMotifMatchRegionMatchBeginMF_0223645 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0223638 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0223646 edam:has_input signature:MF_02236 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J5MF_0223635, 1, (STRLEN(?templateMotifCigarQ8P8J5MF_0223635) - STRLEN(REPLACE(?templateMotifCigarQ8P8J5MF_0223635, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionQ8P8J536) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J5MF_0223637, 1, (STRLEN(?targetMotifMatchCigarQ8P8J5MF_0223637) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J5MF_0223637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J5MF_0223637, 1, (STRLEN(?targetMotifMatchCigarQ8P8J5MF_0223637) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J5MF_0223637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0223638) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02236a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch54 faldo:location ?templateMotifSequenceMatchRegionQ8P8J555 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J557 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J5MF_0223650 .
?templateMotifSequenceMatchRegionQ8P8J555 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J556 .
?templateMotifSequenceMatchBeginQ8P8J556 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J551 ;
faldo:reference isoform:Q8P8J5-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J557 edam:has_input signature:MF_02236 ;
rdf:type edam:operation_0300 .
?targetMotifMatch58 faldo:location ?targetMotifMatchRegionMatch59 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0223661 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J5MF_0223652 .
?targetMotifMatchRegionMatch59 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0223660 .
?targetMotifMatchRegionMatchBeginMF_0223660 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0223653 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0223661 edam:has_input signature:MF_02236 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J5MF_0223650, 1, (STRLEN(?templateMotifCigarQ8P8J5MF_0223650) - STRLEN(REPLACE(?templateMotifCigarQ8P8J5MF_0223650, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionQ8P8J551) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J5MF_0223652, 1, (STRLEN(?targetMotifMatchCigarQ8P8J5MF_0223652) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J5MF_0223652, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J5MF_0223652, 1, (STRLEN(?targetMotifMatchCigarQ8P8J5MF_0223652) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J5MF_0223652, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0223653) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02236a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionQ8P8J570 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J572 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J5MF_0223665 .
?templateMotifSequenceMatchRegionQ8P8J570 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J571 .
?templateMotifSequenceMatchBeginQ8P8J571 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J566 ;
faldo:reference isoform:Q8P8J5-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J572 edam:has_input signature:MF_02236 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0223676 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J5MF_0223667 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0223675 .
?targetMotifMatchRegionMatchBeginMF_0223675 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0223668 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0223676 edam:has_input signature:MF_02236 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J5MF_0223665, 1, (STRLEN(?templateMotifCigarQ8P8J5MF_0223665) - STRLEN(REPLACE(?templateMotifCigarQ8P8J5MF_0223665, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionQ8P8J566) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J5MF_0223667, 1, (STRLEN(?targetMotifMatchCigarQ8P8J5MF_0223667) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J5MF_0223667, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J5MF_0223667, 1, (STRLEN(?targetMotifMatchCigarQ8P8J5MF_0223667) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J5MF_0223667, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0223668) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02236a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionQ8P8J585 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J587 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J5MF_0223680 .
?templateMotifSequenceMatchRegionQ8P8J585 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J586 .
?templateMotifSequenceMatchBeginQ8P8J586 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J581 ;
faldo:reference isoform:Q8P8J5-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J587 edam:has_input signature:MF_02236 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0223691 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J5MF_0223682 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0223690 .
?targetMotifMatchRegionMatchBeginMF_0223690 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0223683 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0223691 edam:has_input signature:MF_02236 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J5MF_0223680, 1, (STRLEN(?templateMotifCigarQ8P8J5MF_0223680) - STRLEN(REPLACE(?templateMotifCigarQ8P8J5MF_0223680, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionQ8P8J581) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J5MF_0223682, 1, (STRLEN(?targetMotifMatchCigarQ8P8J5MF_0223682) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J5MF_0223682, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J5MF_0223682, 1, (STRLEN(?targetMotifMatchCigarQ8P8J5MF_0223682) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J5MF_0223682, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0223683) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02236a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
}
"xsd:string |
