| http://purl.uniprot.org/unirules/MF_02243#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:776255 up:source unirule:MF_02243 .
_:776256 up:source unirule:MF_02243 .
_:776257 up:source unirule:MF_02243 .
_:776258 up:source unirule:MF_02243 .
_:776259 up:source unirule:MF_02243 .
_:776260 up:source unirule:MF_02243 .
_:776261 up:source unirule:MF_02243 .
_:776262 up:source unirule:MF_02243 .
_:776263 up:source unirule:MF_02243 .
_:776264 up:source unirule:MF_02243 .
_:776265 up:source unirule:MF_02243 .
_:776266 up:source unirule:MF_02243 .
_:776267 up:source unirule:MF_02243 .
_:776268 up:source unirule:MF_02243 .
_:776269 up:source unirule:MF_02243 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0016856 ,
GO:0046872 ,
keyword:413 ,
keyword:479 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.1.2.7' ;
up:fullName 'Tagaturonate/fructuronate epimerase' ;
up:shortName 'D-TagA/D-FruA epimerase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'uxaE' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the epimerization of D-tagaturonate (D-TagA) to D-fructuronate (D-FruA).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:60240 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the UxaE family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:60240 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:60240 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:60240 .
_:776270 a rdf:Statement ;
up:attribution _:776255 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:776271 a rdf:Statement ;
up:attribution _:776256 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:776272 a rdf:Statement ;
up:attribution _:776257 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:776273 a rdf:Statement ;
up:attribution _:776258 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:776274 a rdf:Statement ;
up:attribution _:776259 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:776275 a rdf:Statement ;
up:attribution _:776260 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:776276 a rdf:Statement ;
up:attribution _:776261 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:776277 a rdf:Statement ;
up:attribution _:776262 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:776278 a rdf:Statement ;
up:attribution _:776263 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016856 .
_:776279 a rdf:Statement ;
up:attribution _:776264 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046872 .
_:776280 a rdf:Statement ;
up:source unirule:MF_02243 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:776281 a rdf:Statement ;
up:attribution _:776265 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:776282 a rdf:Statement ;
up:source unirule:MF_02243 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:776283 a rdf:Statement ;
up:attribution _:776266 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:776284 a rdf:Statement ;
up:source unirule:MF_02243 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:776285 a rdf:Statement ;
up:attribution _:776267 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:776286 a rdf:Statement ;
up:source unirule:MF_02243 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:776287 a rdf:Statement ;
up:attribution _:776268 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:776288 a rdf:Statement ;
up:source unirule:MF_02243 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:776289 a rdf:Statement ;
up:attribution _:776269 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02243
#Rule MF_02243 Created by:? on:2020-01-30 Modified by:Edouard de Castro on:2022-11-19
VALUES ?supertaxon40 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02243 .
?thisOrganism rdfs:subClassOf+ ?supertaxon40 .
BIND(URI(CONCAT(STR(?this), '#MF_02243a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02243a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02243a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02243a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02243a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionQ9WYS146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYS148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYS1MF_0224341 .
?templateMotifSequenceMatchRegionQ9WYS146 faldo:begin ?templateMotifSequenceMatchBeginQ9WYS147 .
?templateMotifSequenceMatchBeginQ9WYS147 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYS142 ;
faldo:reference isoform:Q9WYS1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYS148 edam:has_input signature:MF_02243 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0224352 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYS1MF_0224343 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0224351 .
?targetMotifMatchRegionMatchBeginMF_0224351 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0224344 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0224352 edam:has_input signature:MF_02243 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYS1MF_0224341, 1, (STRLEN(?templateMotifCigarQ9WYS1MF_0224341) - STRLEN(REPLACE(?templateMotifCigarQ9WYS1MF_0224341, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionQ9WYS142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYS1MF_0224343, 1, (STRLEN(?targetMotifMatchCigarQ9WYS1MF_0224343) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYS1MF_0224343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYS1MF_0224343, 1, (STRLEN(?targetMotifMatchCigarQ9WYS1MF_0224343) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYS1MF_0224343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0224344) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02243a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionQ9WYS161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYS163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYS1MF_0224356 .
?templateMotifSequenceMatchRegionQ9WYS161 faldo:begin ?templateMotifSequenceMatchBeginQ9WYS162 .
?templateMotifSequenceMatchBeginQ9WYS162 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYS157 ;
faldo:reference isoform:Q9WYS1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYS163 edam:has_input signature:MF_02243 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0224367 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYS1MF_0224358 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0224366 .
?targetMotifMatchRegionMatchBeginMF_0224366 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0224359 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0224367 edam:has_input signature:MF_02243 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYS1MF_0224356, 1, (STRLEN(?templateMotifCigarQ9WYS1MF_0224356) - STRLEN(REPLACE(?templateMotifCigarQ9WYS1MF_0224356, CONCAT('^(?:-*[^-]){', STR(((266 - ?templateMotifSequenceMatchBeginPositionQ9WYS157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYS1MF_0224358, 1, (STRLEN(?targetMotifMatchCigarQ9WYS1MF_0224358) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYS1MF_0224358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYS1MF_0224358, 1, (STRLEN(?targetMotifMatchCigarQ9WYS1MF_0224358) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYS1MF_0224358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0224359) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02243a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch75 faldo:location ?templateMotifSequenceMatchRegionQ9WYS176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYS178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYS1MF_0224371 .
?templateMotifSequenceMatchRegionQ9WYS176 faldo:begin ?templateMotifSequenceMatchBeginQ9WYS177 .
?templateMotifSequenceMatchBeginQ9WYS177 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYS172 ;
faldo:reference isoform:Q9WYS1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYS178 edam:has_input signature:MF_02243 ;
rdf:type edam:operation_0300 .
?targetMotifMatch79 faldo:location ?targetMotifMatchRegionMatch80 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0224382 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYS1MF_0224373 .
?targetMotifMatchRegionMatch80 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0224381 .
?targetMotifMatchRegionMatchBeginMF_0224381 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0224374 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0224382 edam:has_input signature:MF_02243 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYS1MF_0224371, 1, (STRLEN(?templateMotifCigarQ9WYS1MF_0224371) - STRLEN(REPLACE(?templateMotifCigarQ9WYS1MF_0224371, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionQ9WYS172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYS1MF_0224373, 1, (STRLEN(?targetMotifMatchCigarQ9WYS1MF_0224373) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYS1MF_0224373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYS1MF_0224373, 1, (STRLEN(?targetMotifMatchCigarQ9WYS1MF_0224373) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYS1MF_0224373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0224374) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02243a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionQ9WYS191 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYS193 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYS1MF_0224386 .
?templateMotifSequenceMatchRegionQ9WYS191 faldo:begin ?templateMotifSequenceMatchBeginQ9WYS192 .
?templateMotifSequenceMatchBeginQ9WYS192 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYS187 ;
faldo:reference isoform:Q9WYS1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYS193 edam:has_input signature:MF_02243 ;
rdf:type edam:operation_0300 .
?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0224397 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYS1MF_0224388 .
?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0224396 .
?targetMotifMatchRegionMatchBeginMF_0224396 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0224389 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0224397 edam:has_input signature:MF_02243 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYS1MF_0224386, 1, (STRLEN(?templateMotifCigarQ9WYS1MF_0224386) - STRLEN(REPLACE(?templateMotifCigarQ9WYS1MF_0224386, CONCAT('^(?:-*[^-]){', STR(((308 - ?templateMotifSequenceMatchBeginPositionQ9WYS187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYS1MF_0224388, 1, (STRLEN(?targetMotifMatchCigarQ9WYS1MF_0224388) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYS1MF_0224388, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYS1MF_0224388, 1, (STRLEN(?targetMotifMatchCigarQ9WYS1MF_0224388) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYS1MF_0224388, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0224389) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02243a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionQ9WYS1106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9WYS1108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9WYS1MF_02243101 .
?templateMotifSequenceMatchRegionQ9WYS1106 faldo:begin ?templateMotifSequenceMatchBeginQ9WYS1107 .
?templateMotifSequenceMatchBeginQ9WYS1107 faldo:position ?templateMotifSequenceMatchBeginPositionQ9WYS1102 ;
faldo:reference isoform:Q9WYS1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9WYS1108 edam:has_input signature:MF_02243 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02243112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9WYS1MF_02243103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02243111 .
?targetMotifMatchRegionMatchBeginMF_02243111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02243104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02243112 edam:has_input signature:MF_02243 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9WYS1MF_02243101, 1, (STRLEN(?templateMotifCigarQ9WYS1MF_02243101) - STRLEN(REPLACE(?templateMotifCigarQ9WYS1MF_02243101, CONCAT('^(?:-*[^-]){', STR(((341 - ?templateMotifSequenceMatchBeginPositionQ9WYS1102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9WYS1MF_02243103, 1, (STRLEN(?targetMotifMatchCigarQ9WYS1MF_02243103) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYS1MF_02243103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9WYS1MF_02243103, 1, (STRLEN(?targetMotifMatchCigarQ9WYS1MF_02243103) - STRLEN(REPLACE(?targetMotifMatchCigarQ9WYS1MF_02243103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_02243104) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02243a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
}
"xsd:string |
