| http://purl.uniprot.org/unirules/MF_02244#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:776619 up:source unirule:MF_02244 .
_:776620 up:source unirule:MF_02244 .
_:776621 up:source unirule:MF_02244 .
_:776622 up:source unirule:MF_02244 .
_:776623 up:source unirule:MF_02244 .
_:776624 up:source unirule:MF_02244 .
_:776625 up:source unirule:MF_02244 .
_:776626 up:source unirule:MF_02244 .
_:776627 up:source unirule:MF_02244 .
_:776628 up:source unirule:MF_02244 .
_:776629 up:source unirule:MF_02244 .
_:776630 up:source unirule:MF_02244 .
_:776631 up:source unirule:MF_02244 .
_:776632 up:source unirule:MF_02244 .
_:776633 up:source unirule:MF_02244 .
_:776634 up:source unirule:MF_02244 .
_:776635 up:source unirule:MF_02244 .
_:776636 up:source unirule:MF_02244 .
_:776637 up:source unirule:MF_02244 .
_:776638 up:source unirule:MF_02244 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation11 ,
?annotation12 ,
?annotation13 ;
up:classifiedWith GO:0006785 ,
GO:0016634 ,
keyword:349 ,
keyword:350 ,
keyword:408 ,
keyword:479 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.3.98.5' ;
up:fullName 'Coproheme decarboxylase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Coproheme III oxidative decarboxylase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Hydrogen peroxide-dependent heme synthase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'chdC' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Involved in coproporphyrin-dependent heme b biosynthesis. Catalyzes the decarboxylation of Fe-coproporphyrin III (coproheme) to heme b (protoheme IX), the last step of the pathway. The reaction occurs in a stepwise manner with a three-propionate intermediate.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity .
?annotation9 up:activity ?activity10 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity10 up:catalyticActivity .
?annotation11 up:cofactor chebi:68438 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Fe-coproporphyrin III acts as both substrate and redox cofactor.' .
?annotation12 a up:Pathway_Annotation ;
rdfs:comment 'Porphyrin-containing compound metabolism; protoheme biosynthesis.' .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ChdC family. Type 2 subfamily.' .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Active_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 up:ligandPart ?ligand24 ;
rdfs:subClassOf chebi:18248 ,
chebi:68438 .
_:776639 a rdf:Statement ;
up:attribution _:776619 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:776640 a rdf:Statement ;
up:attribution _:776620 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:776641 a rdf:Statement ;
up:attribution _:776621 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:776642 a rdf:Statement ;
up:attribution _:776622 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:776643 a rdf:Statement ;
up:attribution _:776623 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:776644 a rdf:Statement ;
up:attribution _:776624 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:776645 a rdf:Statement ;
up:attribution _:776625 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:776646 a rdf:Statement ;
up:attribution _:776626 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:776647 a rdf:Statement ;
up:attribution _:776627 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:776648 a rdf:Statement ;
up:attribution _:776628 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:776649 a rdf:Statement ;
up:attribution _:776629 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:776650 a rdf:Statement ;
up:attribution _:776630 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:349 .
_:776651 a rdf:Statement ;
up:attribution _:776631 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:350 .
_:776652 a rdf:Statement ;
up:attribution _:776632 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:776653 a rdf:Statement ;
up:attribution _:776633 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:776654 a rdf:Statement ;
up:attribution _:776634 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:776655 a rdf:Statement ;
up:attribution _:776635 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016634 .
_:776656 a rdf:Statement ;
up:attribution _:776636 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006785 .
_:776657 a rdf:Statement ;
up:source unirule:MF_02244 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:776658 a rdf:Statement ;
up:attribution _:776637 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:776659 a rdf:Statement ;
up:source unirule:MF_02244 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:776660 a rdf:Statement ;
up:attribution _:776638 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02244
#Rule MF_02244 Created by:? on:2020-03-20 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02244 .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(URI(CONCAT(STR(?this), '#MF_02244a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02244a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02244a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_02244a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02244a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02244a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02244a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_02244a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_02244a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_02244a13')) AS ?annotation13) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch31 faldo:location ?templateMotifSequenceMatchRegionP9WL4532 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WL4534 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WL45MF_0224427 .
?templateMotifSequenceMatchRegionP9WL4532 faldo:begin ?templateMotifSequenceMatchBeginP9WL4533 .
?templateMotifSequenceMatchBeginP9WL4533 faldo:position ?templateMotifSequenceMatchBeginPositionP9WL4528 ;
faldo:reference isoform:P9WL45-1 .
?templateMotifSequenceProfileAlignmentOperationP9WL4534 edam:has_input signature:MF_02244 ;
rdf:type edam:operation_0300 .
?targetMotifMatch35 faldo:location ?targetMotifMatchRegionMatch36 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0224438 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WL45MF_0224429 .
?targetMotifMatchRegionMatch36 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0224437 .
?targetMotifMatchRegionMatchBeginMF_0224437 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0224430 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0224438 edam:has_input signature:MF_02244 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WL45MF_0224427, 1, (STRLEN(?templateMotifCigarP9WL45MF_0224427) - STRLEN(REPLACE(?templateMotifCigarP9WL45MF_0224427, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP9WL4528) + 1)), '}'), '')))), '[a-z]', '')) AS ?step139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WL45MF_0224429, 1, (STRLEN(?targetMotifMatchCigarP9WL45MF_0224429) - STRLEN(REPLACE(?targetMotifMatchCigarP9WL45MF_0224429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WL45MF_0224429, 1, (STRLEN(?targetMotifMatchCigarP9WL45MF_0224429) - STRLEN(REPLACE(?targetMotifMatchCigarP9WL45MF_0224429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), '')))), '[^-]', ''))) AS ?step240) .
BIND(((?step240 + ?targetMotifMatchRegionMatchBeginPositionMF_0224430) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02244a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch46 faldo:location ?templateMotifSequenceMatchRegionP9WL4547 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WL4549 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WL45MF_0224442 .
?templateMotifSequenceMatchRegionP9WL4547 faldo:begin ?templateMotifSequenceMatchBeginP9WL4548 .
?templateMotifSequenceMatchBeginP9WL4548 faldo:position ?templateMotifSequenceMatchBeginPositionP9WL4543 ;
faldo:reference isoform:P9WL45-1 .
?templateMotifSequenceProfileAlignmentOperationP9WL4549 edam:has_input signature:MF_02244 ;
rdf:type edam:operation_0300 .
?targetMotifMatch50 faldo:location ?targetMotifMatchRegionMatch51 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0224453 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WL45MF_0224444 .
?targetMotifMatchRegionMatch51 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0224452 .
?targetMotifMatchRegionMatchBeginMF_0224452 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0224445 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0224453 edam:has_input signature:MF_02244 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WL45MF_0224442, 1, (STRLEN(?templateMotifCigarP9WL45MF_0224442) - STRLEN(REPLACE(?templateMotifCigarP9WL45MF_0224442, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP9WL4543) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WL45MF_0224444, 1, (STRLEN(?targetMotifMatchCigarP9WL45MF_0224444) - STRLEN(REPLACE(?targetMotifMatchCigarP9WL45MF_0224444, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WL45MF_0224444, 1, (STRLEN(?targetMotifMatchCigarP9WL45MF_0224444) - STRLEN(REPLACE(?targetMotifMatchCigarP9WL45MF_0224444, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0224445) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02244a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
}
"xsd:string |
