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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_03004#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03004#construct-template-98 |
| http://purl.uniprot.org/unirules/MF_03004#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03004#construct-template-74 |
| http://purl.uniprot.org/unirules/MF_03004#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03004#construct-template-73 |
| http://purl.uniprot.org/unirules/MF_03004#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03004#construct-template-97 |
| http://purl.uniprot.org/unirules/MF_03004#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03004#construct-template-72 |
| http://purl.uniprot.org/unirules/MF_03004#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03004#construct-template-96 |
| http://purl.uniprot.org/unirules/MF_03004#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03004#construct-template-95 |
| http://purl.uniprot.org/unirules/MF_03004#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03004#construct-template-71 |
| http://purl.uniprot.org/unirules/MF_03004#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03004#construct-template-90 |
| http://purl.uniprot.org/unirules/MF_03004#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_03004#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_03004#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_03004#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_03004#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_03004#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:781804 up:source unirule:MF_03004 . _:781805 up:source unirule:MF_03004 . _:781806 up:source unirule:MF_03004 . _:781807 up:source unirule:MF_03004 . _:781808 up:source unirule:MF_03004 . _:781809 up:source unirule:MF_03004 . _:781810 up:source unirule:MF_03004 . _:781811 up:source unirule:MF_03004 . _:781812 up:source unirule:MF_03004 . _:781813 up:source unirule:MF_03004 . _:781814 up:source unirule:MF_03004 . _:781815 up:source unirule:MF_03004 . _:781816 up:source unirule:MF_03004 . _:781817 up:source unirule:MF_03004 . _:781818 up:source unirule:MF_03004 . _:781819 up:source unirule:MF_03004 . _:781820 up:source unirule:MF_03004 . _:781821 up:source unirule:MF_03004 . _:781822 up:source unirule:MF_03004 . _:781823 up:source unirule:MF_03004 . ?this up:annotation ?annotation0 ; up:classifiedWith GO:0001732 , GO:0002183 , GO:0003743 , GO:0005737 , GO:0016282 , GO:0033290 , GO:0071540 , keyword:396 , keyword:648 , keyword:963 . ?annotation0 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the eIF-3 subunit E family.' . ?case1 up:classifiedWith keyword:7 . ?case3 up:classifiedWith keyword:597 . ?case4 up:classifiedWith GO:0005634 , keyword:539 . ?pfs12 up:annotation ?annotation13 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N-acetylalanine' . ?pfsb14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfs18 up:annotation ?annotation19 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; rdf:type up:Region_Annotation ; rdfs:comment 'Sufficient for interaction with EPAS1' . ?pfsb20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; rdf:type up:Region_Annotation ; rdfs:comment 'Sufficient for interaction with TRIM27' . ?pfsb26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; rdf:type up:Region_Annotation ; rdfs:comment 'Sufficient for interaction with MCM7' . ?pfsb32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; rdf:type up:Initiator_Methionine_Annotation ; rdfs:comment 'Removed' . ?pfsb38 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . _:781824 a rdf:Statement ; up:attribution _:781804 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:781825 a rdf:Statement ; up:attribution _:781805 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:781826 a rdf:Statement ; up:attribution _:781806 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:396 . _:781827 a rdf:Statement ; up:attribution _:781807 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:648 . _:781828 a rdf:Statement ; up:attribution _:781808 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003743 . _:781829 a rdf:Statement ; up:attribution _:781809 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0001732 . _:781830 a rdf:Statement ; up:attribution _:781810 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0002183 . _:781831 a rdf:Statement ; up:attribution _:781811 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:781832 a rdf:Statement ; up:attribution _:781812 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0071540 . _:781833 a rdf:Statement ; up:attribution _:781813 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016282 . _:781834 a rdf:Statement ; up:attribution _:781814 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0033290 . _:781835 a rdf:Statement ; up:attribution _:781815 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:7 . _:781836 a rdf:Statement ; up:attribution _:781816 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:597 . _:781837 a rdf:Statement ; up:attribution _:781817 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object keyword:539 . _:781838 a rdf:Statement ; up:attribution _:781818 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005634 . _:781839 a rdf:Statement ; up:source unirule:MF_03004 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:781840 a rdf:Statement ; up:attribution _:781819 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:781841 a rdf:Statement ; up:source unirule:MF_03004 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:781842 a rdf:Statement ; up:attribution _:781820 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:781843 a rdf:Statement ; up:source unirule:MF_03004 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:781844 a rdf:Statement ; up:attribution _:781821 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:781845 a rdf:Statement ; up:source unirule:MF_03004 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:781846 a rdf:Statement ; up:attribution _:781822 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:781847 a rdf:Statement ; up:source unirule:MF_03004 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:781848 a rdf:Statement ; up:attribution _:781823 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03004 #Rule MF_03004 Created by:? on:2009-02-04 Modified by:Edouard de Castro on:2019-11-20 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_03004 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03004a0')) AS ?annotation0) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch46 faldo:location ?templateMotifSequenceMatchRegionP6022847 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6022849 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP60228MF_0300442 . ?templateMotifSequenceMatchRegionP6022847 faldo:begin ?templateMotifSequenceMatchBeginP6022848 . ?templateMotifSequenceMatchBeginP6022848 faldo:position ?templateMotifSequenceMatchBeginPositionP6022843 ; faldo:reference isoform:P60228-1 . ?templateMotifSequenceProfileAlignmentOperationP6022849 edam:has_input signature:MF_03004 ; rdf:type edam:operation_0300 . ?targetMotifMatch50 faldo:location ?targetMotifMatchRegionMatch51 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0300453 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP60228MF_0300444 . ?targetMotifMatchRegionMatch51 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0300452 . ?targetMotifMatchRegionMatchBeginMF_0300452 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0300445 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0300453 edam:has_input signature:MF_03004 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagacetyl) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60228MF_0300442, 1, (STRLEN(?templateMotifCigarP60228MF_0300442) - STRLEN(REPLACE(?templateMotifCigarP60228MF_0300442, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP6022843) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60228MF_0300444, 1, (STRLEN(?targetMotifMatchCigarP60228MF_0300444) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_0300444, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60228MF_0300444, 1, (STRLEN(?targetMotifMatchCigarP60228MF_0300444) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_0300444, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) . BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0300445) - 1) AS ?thisPositionOn16) . BIND(?thisPositionOn16 AS ?thisPositionOn17) . BIND(?this AS ?pfs1t56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'A')) . BIND(URI(CONCAT(STR(?this), '#MF_03004a13')) AS ?annotation13) . BIND(?this AS ?pfs12) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionP6022862 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6022864 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP60228MF_0300457 . ?templateMotifSequenceMatchRegionP6022862 faldo:begin ?templateMotifSequenceMatchBeginP6022863 . ?templateMotifSequenceMatchBeginP6022863 faldo:position ?templateMotifSequenceMatchBeginPositionP6022858 ; faldo:reference isoform:P60228-1 . ?templateMotifSequenceProfileAlignmentOperationP6022864 edam:has_input signature:MF_03004 ; rdf:type edam:operation_0300 . ?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0300468 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP60228MF_0300459 . ?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0300467 . ?targetMotifMatchRegionMatchBeginMF_0300467 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0300460 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0300468 edam:has_input signature:MF_03004 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60228MF_0300457, 1, (STRLEN(?templateMotifCigarP60228MF_0300457) - STRLEN(REPLACE(?templateMotifCigarP60228MF_0300457, CONCAT('^(?:-*[^-]){', STR(((4 - ?templateMotifSequenceMatchBeginPositionP6022858) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60228MF_0300459, 1, (STRLEN(?targetMotifMatchCigarP60228MF_0300459) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_0300459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60228MF_0300459, 1, (STRLEN(?targetMotifMatchCigarP60228MF_0300459) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_0300459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) . BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0300460) - 1) AS ?thisPositionOn22) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60228MF_0300457, 1, (STRLEN(?templateMotifCigarP60228MF_0300457) - STRLEN(REPLACE(?templateMotifCigarP60228MF_0300457, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionP6022858) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60228MF_0300459, 1, (STRLEN(?targetMotifMatchCigarP60228MF_0300459) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_0300459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60228MF_0300459, 1, (STRLEN(?targetMotifMatchCigarP60228MF_0300459) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_0300459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) . BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0300460) - 1) AS ?thisPositionOn23) . BIND(?this AS ?pfs2t73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) . FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) . BIND(URI(CONCAT(STR(?this), '#MF_03004a19')) AS ?annotation19) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionP6022879 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6022881 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP60228MF_0300474 . ?templateMotifSequenceMatchRegionP6022879 faldo:begin ?templateMotifSequenceMatchBeginP6022880 . ?templateMotifSequenceMatchBeginP6022880 faldo:position ?templateMotifSequenceMatchBeginPositionP6022875 ; faldo:reference isoform:P60228-1 . ?templateMotifSequenceProfileAlignmentOperationP6022881 edam:has_input signature:MF_03004 ; rdf:type edam:operation_0300 . ?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0300485 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP60228MF_0300476 . ?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0300484 . ?targetMotifMatchRegionMatchBeginMF_0300484 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0300477 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0300485 edam:has_input signature:MF_03004 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60228MF_0300474, 1, (STRLEN(?templateMotifCigarP60228MF_0300474) - STRLEN(REPLACE(?templateMotifCigarP60228MF_0300474, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionP6022875) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60228MF_0300476, 1, (STRLEN(?targetMotifMatchCigarP60228MF_0300476) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_0300476, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60228MF_0300476, 1, (STRLEN(?targetMotifMatchCigarP60228MF_0300476) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_0300476, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) . BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0300477) - 1) AS ?thisPositionOn28) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60228MF_0300474, 1, (STRLEN(?templateMotifCigarP60228MF_0300474) - STRLEN(REPLACE(?templateMotifCigarP60228MF_0300474, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionP6022875) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60228MF_0300476, 1, (STRLEN(?targetMotifMatchCigarP60228MF_0300476) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_0300476, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60228MF_0300476, 1, (STRLEN(?targetMotifMatchCigarP60228MF_0300476) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_0300476, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) . BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0300477) - 1) AS ?thisPositionOn29) . BIND(?this AS ?pfs2t90) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) . FILTER ((BOUND(?thisPositionOn28) && BOUND(?thisPositionOn29))) . BIND(URI(CONCAT(STR(?this), '#MF_03004a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionP6022896 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6022898 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP60228MF_0300491 . ?templateMotifSequenceMatchRegionP6022896 faldo:begin ?templateMotifSequenceMatchBeginP6022897 . ?templateMotifSequenceMatchBeginP6022897 faldo:position ?templateMotifSequenceMatchBeginPositionP6022892 ; faldo:reference isoform:P60228-1 . ?templateMotifSequenceProfileAlignmentOperationP6022898 edam:has_input signature:MF_03004 ; rdf:type edam:operation_0300 . ?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03004102 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP60228MF_0300493 . ?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03004101 . ?targetMotifMatchRegionMatchBeginMF_03004101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0300494 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03004102 edam:has_input signature:MF_03004 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60228MF_0300491, 1, (STRLEN(?templateMotifCigarP60228MF_0300491) - STRLEN(REPLACE(?templateMotifCigarP60228MF_0300491, CONCAT('^(?:-*[^-]){', STR(((351 - ?templateMotifSequenceMatchBeginPositionP6022892) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60228MF_0300493, 1, (STRLEN(?targetMotifMatchCigarP60228MF_0300493) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_0300493, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60228MF_0300493, 1, (STRLEN(?targetMotifMatchCigarP60228MF_0300493) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_0300493, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) . BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0300494) - 1) AS ?thisPositionOn34) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60228MF_0300491, 1, (STRLEN(?templateMotifCigarP60228MF_0300491) - STRLEN(REPLACE(?templateMotifCigarP60228MF_0300491, CONCAT('^(?:-*[^-]){', STR(((445 - ?templateMotifSequenceMatchBeginPositionP6022892) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60228MF_0300493, 1, (STRLEN(?targetMotifMatchCigarP60228MF_0300493) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_0300493, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60228MF_0300493, 1, (STRLEN(?targetMotifMatchCigarP60228MF_0300493) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_0300493, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) . BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0300494) - 1) AS ?thisPositionOn35) . BIND(?this AS ?pfs2t107) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) . FILTER ((BOUND(?thisPositionOn34) && BOUND(?thisPositionOn35))) . BIND(URI(CONCAT(STR(?this), '#MF_03004a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionP60228113 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP60228115 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP60228MF_03004108 . ?templateMotifSequenceMatchRegionP60228113 faldo:begin ?templateMotifSequenceMatchBeginP60228114 . ?templateMotifSequenceMatchBeginP60228114 faldo:position ?templateMotifSequenceMatchBeginPositionP60228109 ; faldo:reference isoform:P60228-1 . ?templateMotifSequenceProfileAlignmentOperationP60228115 edam:has_input signature:MF_03004 ; rdf:type edam:operation_0300 . ?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03004119 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP60228MF_03004110 . ?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03004118 . ?targetMotifMatchRegionMatchBeginMF_03004118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03004111 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03004119 edam:has_input signature:MF_03004 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP60228MF_03004108, 1, (STRLEN(?templateMotifCigarP60228MF_03004108) - STRLEN(REPLACE(?templateMotifCigarP60228MF_03004108, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP60228109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP60228MF_03004110, 1, (STRLEN(?targetMotifMatchCigarP60228MF_03004110) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_03004110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP60228MF_03004110, 1, (STRLEN(?targetMotifMatchCigarP60228MF_03004110) - STRLEN(REPLACE(?targetMotifMatchCigarP60228MF_03004110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) . BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_03004111) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs2t122) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'M')) . BIND(URI(CONCAT(STR(?this), '#MF_03004a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag123) . } BIND(IF(BOUND(?tagacetyl), ?caseWithTag123, ?UNBOUND_VARIABLE) AS ?case1) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . BIND(?this AS ?case2) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(?this AS ?case3) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . BIND(?this AS ?case4) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7214 . BIND(?this AS ?case5) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:6237 . BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:40674 . })) . BIND(?this AS ?case7) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:7742 . })) . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:40674 . })) . BIND(?this AS ?case9) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon124 {taxon:4751 taxon:40674} ?thisOrganism rdfs:subClassOf+ ?supertaxon124 . })) . BIND(?this AS ?case10) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon125 {taxon:7214 taxon:7742} ?thisOrganism rdfs:subClassOf+ ?supertaxon125 . })) . BIND(?this AS ?case11) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_03004 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_03004#construct |