| http://purl.uniprot.org/unirules/MF_03052#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:804283 up:source unirule:MF_03052 .
_:804284 up:source unirule:MF_03052 .
_:804285 up:source unirule:MF_03052 .
_:804286 up:source unirule:MF_03052 .
_:804287 up:source unirule:MF_03052 .
_:804288 up:source unirule:MF_03052 .
_:804289 up:source unirule:MF_03052 .
_:804290 up:source unirule:MF_03052 .
_:804291 up:source unirule:MF_03052 .
_:804292 up:source unirule:MF_03052 .
_:804293 up:source unirule:MF_03052 .
_:804294 up:source unirule:MF_03052 .
_:804295 up:source unirule:MF_03052 .
_:804296 up:source unirule:MF_03052 .
_:804297 up:source unirule:MF_03052 .
_:804298 up:source unirule:MF_03052 .
_:804299 up:source unirule:MF_03052 .
_:804300 up:source unirule:MF_03052 .
_:804301 up:source unirule:MF_03052 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0006777 ,
GO:0030366 ,
GO:1990140 ,
keyword:501 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.8.1.12' ;
up:fullName 'Molybdopterin synthase catalytic subunit' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Molybdenum cofactor synthesis protein 2 large subunit' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Molybdenum cofactor synthesis protein 2B' ;
up:shortName 'MOCS2B' ;
rdf:type up:Structured_Name .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; molybdopterin biosynthesis.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Heterotetramer; composed of 2 small (MOCS2A) and 2 large (MOCS2B) subunits.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MoaE family. MOCS2B subfamily.' .
?case11 up:classifiedWith GO:0005829 .
?case13 up:classifiedWith GO:0005737 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf ?molecule20 .
?molecule20 rdfs:label 'substrate' .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf ?molecule28 .
?molecule28 rdfs:label 'substrate' .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf ?molecule36 .
?molecule36 rdfs:label 'substrate' .
_:804302 a rdf:Statement ;
up:attribution _:804283 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:804303 a rdf:Statement ;
up:attribution _:804284 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:804304 a rdf:Statement ;
up:attribution _:804285 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:804305 a rdf:Statement ;
up:attribution _:804286 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:804306 a rdf:Statement ;
up:attribution _:804287 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:804307 a rdf:Statement ;
up:attribution _:804288 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:804308 a rdf:Statement ;
up:attribution _:804289 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:804309 a rdf:Statement ;
up:attribution _:804290 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:804310 a rdf:Statement ;
up:attribution _:804291 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:804311 a rdf:Statement ;
up:attribution _:804292 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:501 .
_:804312 a rdf:Statement ;
up:attribution _:804293 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:804313 a rdf:Statement ;
up:attribution _:804294 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030366 .
_:804314 a rdf:Statement ;
up:attribution _:804295 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006777 .
_:804315 a rdf:Statement ;
up:attribution _:804296 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1990140 .
_:804316 a rdf:Statement ;
up:attribution _:804297 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005829 .
_:804317 a rdf:Statement ;
up:attribution _:804298 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:804318 a rdf:Statement ;
up:source unirule:MF_03052 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:804319 a rdf:Statement ;
up:attribution _:804299 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:804320 a rdf:Statement ;
up:source unirule:MF_03052 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:804321 a rdf:Statement ;
up:attribution _:804300 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:804322 a rdf:Statement ;
up:source unirule:MF_03052 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:804323 a rdf:Statement ;
up:attribution _:804301 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03052
#Rule MF_03052 Created by:? on:2013-08-20 Modified by:Catherine Rivoire on:2024-10-29
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03052 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03052a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03052a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03052a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_03052a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03052a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03052a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03052a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03052a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch43 faldo:location ?templateMotifSequenceMatchRegionO9600744 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO9600746 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO96007MF_0305239 .
?templateMotifSequenceMatchRegionO9600744 faldo:begin ?templateMotifSequenceMatchBeginO9600745 .
?templateMotifSequenceMatchBeginO9600745 faldo:position ?templateMotifSequenceMatchBeginPositionO9600740 ;
faldo:reference isoform:O96007-1 .
?templateMotifSequenceProfileAlignmentOperationO9600746 edam:has_input signature:MF_03052 ;
rdf:type edam:operation_0300 .
?targetMotifMatch47 faldo:location ?targetMotifMatchRegionMatch48 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0305250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO96007MF_0305241 .
?targetMotifMatchRegionMatch48 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0305249 .
?targetMotifMatchRegionMatchBeginMF_0305249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0305242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0305250 edam:has_input signature:MF_03052 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO96007MF_0305239, 1, (STRLEN(?templateMotifCigarO96007MF_0305239) - STRLEN(REPLACE(?templateMotifCigarO96007MF_0305239, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionO9600740) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO96007MF_0305241, 1, (STRLEN(?targetMotifMatchCigarO96007MF_0305241) - STRLEN(REPLACE(?targetMotifMatchCigarO96007MF_0305241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO96007MF_0305241, 1, (STRLEN(?targetMotifMatchCigarO96007MF_0305241) - STRLEN(REPLACE(?targetMotifMatchCigarO96007MF_0305241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0305242) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO96007MF_0305239, 1, (STRLEN(?templateMotifCigarO96007MF_0305239) - STRLEN(REPLACE(?templateMotifCigarO96007MF_0305239, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionO9600740) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO96007MF_0305241, 1, (STRLEN(?targetMotifMatchCigarO96007MF_0305241) - STRLEN(REPLACE(?targetMotifMatchCigarO96007MF_0305241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO96007MF_0305241, 1, (STRLEN(?targetMotifMatchCigarO96007MF_0305241) - STRLEN(REPLACE(?targetMotifMatchCigarO96007MF_0305241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0305242) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse18) .
FILTER (REGEX('[HF]R', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03052a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionO9600761 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO9600763 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO96007MF_0305256 .
?templateMotifSequenceMatchRegionO9600761 faldo:begin ?templateMotifSequenceMatchBeginO9600762 .
?templateMotifSequenceMatchBeginO9600762 faldo:position ?templateMotifSequenceMatchBeginPositionO9600757 ;
faldo:reference isoform:O96007-1 .
?templateMotifSequenceProfileAlignmentOperationO9600763 edam:has_input signature:MF_03052 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0305267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO96007MF_0305258 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0305266 .
?targetMotifMatchRegionMatchBeginMF_0305266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0305259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0305267 edam:has_input signature:MF_03052 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO96007MF_0305256, 1, (STRLEN(?templateMotifCigarO96007MF_0305256) - STRLEN(REPLACE(?templateMotifCigarO96007MF_0305256, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionO9600757) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO96007MF_0305258, 1, (STRLEN(?targetMotifMatchCigarO96007MF_0305258) - STRLEN(REPLACE(?targetMotifMatchCigarO96007MF_0305258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO96007MF_0305258, 1, (STRLEN(?targetMotifMatchCigarO96007MF_0305258) - STRLEN(REPLACE(?targetMotifMatchCigarO96007MF_0305258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0305259) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO96007MF_0305256, 1, (STRLEN(?templateMotifCigarO96007MF_0305256) - STRLEN(REPLACE(?templateMotifCigarO96007MF_0305256, CONCAT('^(?:-*[^-]){', STR(((168 - ?templateMotifSequenceMatchBeginPositionO9600757) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO96007MF_0305258, 1, (STRLEN(?targetMotifMatchCigarO96007MF_0305258) - STRLEN(REPLACE(?targetMotifMatchCigarO96007MF_0305258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO96007MF_0305258, 1, (STRLEN(?targetMotifMatchCigarO96007MF_0305258) - STRLEN(REPLACE(?targetMotifMatchCigarO96007MF_0305258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0305259) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse26) .
FILTER (REGEX('K[ARNDCQEGHILKMFPSTWYVBZJUOX]E', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03052a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionO9600778 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO9600780 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO96007MF_0305273 .
?templateMotifSequenceMatchRegionO9600778 faldo:begin ?templateMotifSequenceMatchBeginO9600779 .
?templateMotifSequenceMatchBeginO9600779 faldo:position ?templateMotifSequenceMatchBeginPositionO9600774 ;
faldo:reference isoform:O96007-1 .
?templateMotifSequenceProfileAlignmentOperationO9600780 edam:has_input signature:MF_03052 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0305284 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO96007MF_0305275 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0305283 .
?targetMotifMatchRegionMatchBeginMF_0305283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0305276 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0305284 edam:has_input signature:MF_03052 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO96007MF_0305273, 1, (STRLEN(?templateMotifCigarO96007MF_0305273) - STRLEN(REPLACE(?templateMotifCigarO96007MF_0305273, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionO9600774) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO96007MF_0305275, 1, (STRLEN(?targetMotifMatchCigarO96007MF_0305275) - STRLEN(REPLACE(?targetMotifMatchCigarO96007MF_0305275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO96007MF_0305275, 1, (STRLEN(?targetMotifMatchCigarO96007MF_0305275) - STRLEN(REPLACE(?targetMotifMatchCigarO96007MF_0305275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0305276) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03052a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:50557 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:147538 .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7742 .
})) .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
} UNION {
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:50557 .
}
BIND(?this AS ?case14) .
}
}
"xsd:string |
