| http://purl.uniprot.org/unirules/MF_03070#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:812725 up:source unirule:MF_03070 .
_:812726 up:source unirule:MF_03070 .
_:812727 up:source unirule:MF_03070 .
_:812728 up:source unirule:MF_03070 .
_:812729 up:source unirule:MF_03070 .
_:812730 up:source unirule:MF_03070 .
_:812731 up:source unirule:MF_03070 .
_:812732 up:source unirule:MF_03070 .
_:812733 up:source unirule:MF_03070 .
_:812734 up:source unirule:MF_03070 .
_:812735 up:source unirule:MF_03070 .
_:812736 up:source unirule:MF_03070 .
_:812737 up:source unirule:MF_03070 .
_:812738 up:source unirule:MF_03070 .
_:812739 up:source unirule:MF_03070 .
_:812740 up:source unirule:MF_03070 .
_:812741 up:source unirule:MF_03070 .
_:812742 up:source unirule:MF_03070 .
_:812743 up:source unirule:MF_03070 .
_:812744 up:source unirule:MF_03070 .
_:812745 up:source unirule:MF_03070 .
_:812746 up:source unirule:MF_03070 .
_:812747 up:source unirule:MF_03070 .
_:812748 up:source unirule:MF_03070 .
_:812749 up:source unirule:MF_03070 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0005886 ,
GO:0006879 ,
GO:0006897 ,
GO:0016020 ,
GO:0034755 ,
GO:0070287 ,
keyword:1003 ,
keyword:1133 ,
keyword:406 ,
keyword:408 ,
keyword:410 ,
keyword:472 ,
keyword:675 ,
keyword:735 ,
keyword:812 ,
keyword:813 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Scavenger receptor class A member 5' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'SCARA5' .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the SCARA5 family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Signal-anchor for type II membrane protein' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Extracellular' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?sam26 up:classifiedWith keyword:175 .
?coiledCoil27 faldo:begin ?coiledCoilb28 ;
faldo:end ?coiledCoile29 .
?coiledCoilb28 faldo:position ?coiledCoilbp30 .
?coiledCoile29 faldo:position ?coiledCoilep31 .
?keyword32 up:range ?coiledCoil27 .
_:812750 a rdf:Statement ;
up:attribution _:812725 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:812751 a rdf:Statement ;
up:attribution _:812726 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:812752 a rdf:Statement ;
up:attribution _:812727 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:812753 a rdf:Statement ;
up:attribution _:812728 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:812754 a rdf:Statement ;
up:attribution _:812729 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:812755 a rdf:Statement ;
up:attribution _:812730 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:812756 a rdf:Statement ;
up:attribution _:812731 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:406 .
_:812757 a rdf:Statement ;
up:attribution _:812732 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:812758 a rdf:Statement ;
up:attribution _:812733 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:410 .
_:812759 a rdf:Statement ;
up:attribution _:812734 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:812760 a rdf:Statement ;
up:attribution _:812735 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:675 .
_:812761 a rdf:Statement ;
up:attribution _:812736 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:735 .
_:812762 a rdf:Statement ;
up:attribution _:812737 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:812763 a rdf:Statement ;
up:attribution _:812738 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:812764 a rdf:Statement ;
up:attribution _:812739 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:812765 a rdf:Statement ;
up:attribution _:812740 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:812766 a rdf:Statement ;
up:attribution _:812741 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:812767 a rdf:Statement ;
up:attribution _:812742 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070287 .
_:812768 a rdf:Statement ;
up:attribution _:812743 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006879 .
_:812769 a rdf:Statement ;
up:attribution _:812744 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0034755 .
_:812770 a rdf:Statement ;
up:attribution _:812745 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006897 .
_:812771 a rdf:Statement ;
up:source unirule:MF_03070 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:812772 a rdf:Statement ;
up:attribution _:812746 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:812773 a rdf:Statement ;
up:source unirule:MF_03070 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:812774 a rdf:Statement ;
up:attribution _:812747 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:812775 a rdf:Statement ;
up:source unirule:MF_03070 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:812776 a rdf:Statement ;
up:attribution _:812748 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:812777 a rdf:Statement ;
up:attribution _:812749 ;
rdf:subject ?sam26 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03070
#Rule MF_03070 Created by:? on:2016-08-02 Modified by:Catherine Rivoire on:2023-02-07
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03070 .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(URI(CONCAT(STR(?this), '#MF_03070a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03070a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03070a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03070a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionQ8K29938 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8K29940 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8K299MF_0307033 .
?templateMotifSequenceMatchRegionQ8K29938 faldo:begin ?templateMotifSequenceMatchBeginQ8K29939 .
?templateMotifSequenceMatchBeginQ8K29939 faldo:position ?templateMotifSequenceMatchBeginPositionQ8K29934 ;
faldo:reference isoform:Q8K299-1 .
?templateMotifSequenceProfileAlignmentOperationQ8K29940 edam:has_input signature:MF_03070 ;
rdf:type edam:operation_0300 .
?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0307044 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8K299MF_0307035 .
?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0307043 .
?targetMotifMatchRegionMatchBeginMF_0307043 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0307036 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0307044 edam:has_input signature:MF_03070 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8K299MF_0307033, 1, (STRLEN(?templateMotifCigarQ8K299MF_0307033) - STRLEN(REPLACE(?templateMotifCigarQ8K299MF_0307033, CONCAT('^(?:-*[^-]){', STR(((60 - ?templateMotifSequenceMatchBeginPositionQ8K29934) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8K299MF_0307035, 1, (STRLEN(?targetMotifMatchCigarQ8K299MF_0307035) - STRLEN(REPLACE(?targetMotifMatchCigarQ8K299MF_0307035, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8K299MF_0307035, 1, (STRLEN(?targetMotifMatchCigarQ8K299MF_0307035) - STRLEN(REPLACE(?targetMotifMatchCigarQ8K299MF_0307035, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0307036) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((BOUND(?thisPositionOn12) && BOUND(?thisPositionOn13))) .
BIND(URI(CONCAT(STR(?this), '#MF_03070a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch52 faldo:location ?templateMotifSequenceMatchRegionQ8K29953 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8K29955 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8K299MF_0307048 .
?templateMotifSequenceMatchRegionQ8K29953 faldo:begin ?templateMotifSequenceMatchBeginQ8K29954 .
?templateMotifSequenceMatchBeginQ8K29954 faldo:position ?templateMotifSequenceMatchBeginPositionQ8K29949 ;
faldo:reference isoform:Q8K299-1 .
?templateMotifSequenceProfileAlignmentOperationQ8K29955 edam:has_input signature:MF_03070 ;
rdf:type edam:operation_0300 .
?targetMotifMatch56 faldo:location ?targetMotifMatchRegionMatch57 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0307059 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8K299MF_0307050 .
?targetMotifMatchRegionMatch57 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0307058 .
?targetMotifMatchRegionMatchBeginMF_0307058 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0307051 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0307059 edam:has_input signature:MF_03070 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8K299MF_0307048, 1, (STRLEN(?templateMotifCigarQ8K299MF_0307048) - STRLEN(REPLACE(?templateMotifCigarQ8K299MF_0307048, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionQ8K29949) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8K299MF_0307050, 1, (STRLEN(?targetMotifMatchCigarQ8K299MF_0307050) - STRLEN(REPLACE(?targetMotifMatchCigarQ8K299MF_0307050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8K299MF_0307050, 1, (STRLEN(?targetMotifMatchCigarQ8K299MF_0307050) - STRLEN(REPLACE(?targetMotifMatchCigarQ8K299MF_0307050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0307051) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8K299MF_0307048, 1, (STRLEN(?templateMotifCigarQ8K299MF_0307048) - STRLEN(REPLACE(?templateMotifCigarQ8K299MF_0307048, CONCAT('^(?:-*[^-]){', STR(((81 - ?templateMotifSequenceMatchBeginPositionQ8K29949) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8K299MF_0307050, 1, (STRLEN(?targetMotifMatchCigarQ8K299MF_0307050) - STRLEN(REPLACE(?targetMotifMatchCigarQ8K299MF_0307050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8K299MF_0307050, 1, (STRLEN(?targetMotifMatchCigarQ8K299MF_0307050) - STRLEN(REPLACE(?targetMotifMatchCigarQ8K299MF_0307050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0307051) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_03070a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionQ8K29970 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8K29972 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8K299MF_0307065 .
?templateMotifSequenceMatchRegionQ8K29970 faldo:begin ?templateMotifSequenceMatchBeginQ8K29971 .
?templateMotifSequenceMatchBeginQ8K29971 faldo:position ?templateMotifSequenceMatchBeginPositionQ8K29966 ;
faldo:reference isoform:Q8K299-1 .
?templateMotifSequenceProfileAlignmentOperationQ8K29972 edam:has_input signature:MF_03070 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0307076 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8K299MF_0307067 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0307075 .
?targetMotifMatchRegionMatchBeginMF_0307075 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0307068 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0307076 edam:has_input signature:MF_03070 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8K299MF_0307065, 1, (STRLEN(?templateMotifCigarQ8K299MF_0307065) - STRLEN(REPLACE(?templateMotifCigarQ8K299MF_0307065, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionQ8K29966) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8K299MF_0307067, 1, (STRLEN(?targetMotifMatchCigarQ8K299MF_0307067) - STRLEN(REPLACE(?targetMotifMatchCigarQ8K299MF_0307067, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8K299MF_0307067, 1, (STRLEN(?targetMotifMatchCigarQ8K299MF_0307067) - STRLEN(REPLACE(?targetMotifMatchCigarQ8K299MF_0307067, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0307068) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_03070a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this up:annotation ?samcc80 ;
up:sequence ?thisSequence .
?samcc80 up:range ?samccr81 ;
rdf:type up:Coiled_Coil_Annotation .
?samccr81 faldo:begin ?samccb82 ;
faldo:end ?samcce83 .
?samccb82 faldo:position ?samccbp84 ;
faldo:reference ?thisSequence .
?samcce83 faldo:position ?samccep85 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam26) .
}
BIND(URI(CONCAT(STR(?this), '#MF_03070a32')) AS ?keyword32) .
}
"xsd:string |
