| http://purl.uniprot.org/unirules/MF_03119#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:824246 up:source unirule:MF_03119 .
_:824247 up:source unirule:MF_03119 .
_:824248 up:source unirule:MF_03119 .
_:824249 up:source unirule:MF_03119 .
_:824250 up:source unirule:MF_03119 .
_:824251 up:source unirule:MF_03119 .
_:824252 up:source unirule:MF_03119 .
_:824253 up:source unirule:MF_03119 .
_:824254 up:source unirule:MF_03119 .
_:824255 up:source unirule:MF_03119 .
_:824256 up:source unirule:MF_03119 .
_:824257 up:source unirule:MF_03119 .
_:824258 up:source unirule:MF_03119 .
_:824259 up:source unirule:MF_03119 .
_:824260 up:source unirule:MF_03119 .
_:824261 up:source unirule:MF_03119 .
_:824262 up:source unirule:MF_03119 .
_:824263 up:source unirule:MF_03119 .
_:824264 up:source unirule:MF_03119 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation10 ;
up:classifiedWith GO:0005634 ,
GO:0005737 ,
GO:0019509 ,
GO:0046523 ,
keyword:28 ,
keyword:413 ,
keyword:486 ,
keyword:539 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.3.1.23' ;
up:fullName 'Methylthioribose-1-phosphate isomerase' ;
up:shortName 'M1Pi' ,
'MTR-1-P isomerase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'S-methyl-5-thioribose-1-phosphate isomerase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein' ;
rdf:type up:Structured_Name .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 1/6.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation7li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the eIF-2B alpha/beta/delta subunits family. MtnA subfamily.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:824265 a rdf:Statement ;
up:attribution _:824246 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:824266 a rdf:Statement ;
up:attribution _:824247 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:824267 a rdf:Statement ;
up:attribution _:824248 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:824268 a rdf:Statement ;
up:attribution _:824249 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:824269 a rdf:Statement ;
up:attribution _:824250 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:824270 a rdf:Statement ;
up:attribution _:824251 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:824271 a rdf:Statement ;
up:attribution _:824252 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:824272 a rdf:Statement ;
up:attribution _:824253 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:824273 a rdf:Statement ;
up:attribution _:824254 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:824274 a rdf:Statement ;
up:attribution _:824255 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:824275 a rdf:Statement ;
up:attribution _:824256 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:486 .
_:824276 a rdf:Statement ;
up:attribution _:824257 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:824277 a rdf:Statement ;
up:attribution _:824258 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:824278 a rdf:Statement ;
up:attribution _:824259 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046523 .
_:824279 a rdf:Statement ;
up:attribution _:824260 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019509 .
_:824280 a rdf:Statement ;
up:attribution _:824261 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:824281 a rdf:Statement ;
up:attribution _:824262 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005634 .
_:824282 a rdf:Statement ;
up:source unirule:MF_03119 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:824283 a rdf:Statement ;
up:attribution _:824263 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:824284 a rdf:Statement ;
up:source unirule:MF_03119 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:824285 a rdf:Statement ;
up:attribution _:824264 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03119
#Rule MF_03119 Created by:? on:2012-08-22 Modified by:Edouard de Castro on:2024-09-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01678 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03119a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03119a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03119a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_03119a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03119a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03119a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03119a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03119a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionQ9BV2030 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BV2032 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9BV20MF_0167825 .
?templateMotifSequenceMatchRegionQ9BV2030 faldo:begin ?templateMotifSequenceMatchBeginQ9BV2031 .
?templateMotifSequenceMatchBeginQ9BV2031 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BV2026 ;
faldo:reference isoform:Q9BV20-1 .
?templateMotifSequenceProfileAlignmentOperationQ9BV2032 edam:has_input signature:MF_01678 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0167836 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9BV20MF_0167827 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0167835 .
?targetMotifMatchRegionMatchBeginMF_0167835 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0167828 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0167836 edam:has_input signature:MF_01678 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BV20MF_0167825, 1, (STRLEN(?templateMotifCigarQ9BV20MF_0167825) - STRLEN(REPLACE(?templateMotifCigarQ9BV20MF_0167825, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionQ9BV2026) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BV20MF_0167827, 1, (STRLEN(?targetMotifMatchCigarQ9BV20MF_0167827) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BV20MF_0167827, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BV20MF_0167827, 1, (STRLEN(?targetMotifMatchCigarQ9BV20MF_0167827) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BV20MF_0167827, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0167828) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03119a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionQ9BV2045 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BV2047 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9BV20MF_0167840 .
?templateMotifSequenceMatchRegionQ9BV2045 faldo:begin ?templateMotifSequenceMatchBeginQ9BV2046 .
?templateMotifSequenceMatchBeginQ9BV2046 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BV2041 ;
faldo:reference isoform:Q9BV20-1 .
?templateMotifSequenceProfileAlignmentOperationQ9BV2047 edam:has_input signature:MF_01678 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0167851 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9BV20MF_0167842 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0167850 .
?targetMotifMatchRegionMatchBeginMF_0167850 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0167843 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0167851 edam:has_input signature:MF_01678 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BV20MF_0167840, 1, (STRLEN(?templateMotifCigarQ9BV20MF_0167840) - STRLEN(REPLACE(?templateMotifCigarQ9BV20MF_0167840, CONCAT('^(?:-*[^-]){', STR(((168 - ?templateMotifSequenceMatchBeginPositionQ9BV2041) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BV20MF_0167842, 1, (STRLEN(?targetMotifMatchCigarQ9BV20MF_0167842) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BV20MF_0167842, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BV20MF_0167842, 1, (STRLEN(?targetMotifMatchCigarQ9BV20MF_0167842) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BV20MF_0167842, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0167843) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03119a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon55 {taxon:7742 taxon:4751}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon55 .
BIND(?this AS ?case12) .
}
}
"xsd:string |
