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http://purl.uniprot.org/unirules/MF_03146#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_03146#construct-template-list-0
http://purl.uniprot.org/unirules/MF_03146#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:842820 up:source unirule:MF_03146 . _:842821 up:source unirule:MF_03146 . _:842822 up:source unirule:MF_03146 . _:842823 up:source unirule:MF_03146 . _:842824 up:source unirule:MF_03146 . _:842825 up:source unirule:MF_03146 . _:842826 up:source unirule:MF_03146 . _:842827 up:source unirule:MF_03146 . _:842828 up:source unirule:MF_03146 . _:842829 up:source unirule:MF_03146 . _:842830 up:source unirule:MF_03146 . _:842831 up:source unirule:MF_03146 . _:842832 up:source unirule:MF_03146 . _:842833 up:source unirule:MF_03146 . _:842834 up:source unirule:MF_03146 . _:842835 up:source unirule:MF_03146 . _:842836 up:source unirule:MF_03146 . ?this up:annotation ?annotation1 ; up:classifiedWith GO:0000455 , GO:0006364 , GO:1904047 , keyword:690 , keyword:698 , keyword:808 , keyword:949 ; up:recommendedName ?name0 . ?name0 up:ecName '2.5.1.157' ; up:fullName '18S rRNA aminocarboxypropyltransferase' ; rdf:type up:Structured_Name . ?annotation1 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the TDD superfamily. TSR3 family.' . ?case2 up:classifiedWith GO:0005634 , keyword:539 . ?case4 up:classifiedWith GO:0005737 , keyword:963 . ?pfs6 up:annotation ?annotation7 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; up:ligand ?ligand10 ; rdf:type up:Binding_Site_Annotation . ?pfsb8 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?ligand10 rdfs:subClassOf chebi:59789 . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:59789 . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:59789 . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; up:ligand ?ligand31 ; rdf:type up:Binding_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?ligand31 rdfs:subClassOf chebi:59789 . _:842837 a rdf:Statement ; up:attribution _:842820 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:842838 a rdf:Statement ; up:attribution _:842821 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:842839 a rdf:Statement ; up:attribution _:842822 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:690 . _:842840 a rdf:Statement ; up:attribution _:842823 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:949 . _:842841 a rdf:Statement ; up:attribution _:842824 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:842842 a rdf:Statement ; up:attribution _:842825 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:698 . _:842843 a rdf:Statement ; up:attribution _:842826 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:1904047 . _:842844 a rdf:Statement ; up:attribution _:842827 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006364 . _:842845 a rdf:Statement ; up:attribution _:842828 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000455 . _:842846 a rdf:Statement ; up:attribution _:842829 ; rdf:subject ?case2 ; rdf:predicate up:classifiedWith ; rdf:object keyword:539 . _:842847 a rdf:Statement ; up:attribution _:842830 ; rdf:subject ?case2 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005634 . _:842848 a rdf:Statement ; up:attribution _:842831 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:842849 a rdf:Statement ; up:attribution _:842832 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:842850 a rdf:Statement ; up:source unirule:MF_03146 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:842851 a rdf:Statement ; up:attribution _:842833 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:842852 a rdf:Statement ; up:source unirule:MF_03146 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:842853 a rdf:Statement ; up:attribution _:842834 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:842854 a rdf:Statement ; up:source unirule:MF_03146 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:842855 a rdf:Statement ; up:attribution _:842835 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:842856 a rdf:Statement ; up:source unirule:MF_03146 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:842857 a rdf:Statement ; up:attribution _:842836 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03146 #Rule MF_03146 Created by:? on:2012-08-22 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01116 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03146a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_03146a1')) AS ?annotation1) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch38 faldo:location ?templateMotifSequenceMatchRegionQ1209439 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ1209441 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ12094MF_0111634 . ?templateMotifSequenceMatchRegionQ1209439 faldo:begin ?templateMotifSequenceMatchBeginQ1209440 . ?templateMotifSequenceMatchBeginQ1209440 faldo:position ?templateMotifSequenceMatchBeginPositionQ1209435 ; faldo:reference isoform:Q12094-1 . ?templateMotifSequenceProfileAlignmentOperationQ1209441 edam:has_input signature:MF_01116 ; rdf:type edam:operation_0300 . ?targetMotifMatch42 faldo:location ?targetMotifMatchRegionMatch43 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0111645 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ12094MF_0111636 . ?targetMotifMatchRegionMatch43 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0111644 . ?targetMotifMatchRegionMatchBeginMF_0111644 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0111637 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0111645 edam:has_input signature:MF_01116 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ12094MF_0111634, 1, (STRLEN(?templateMotifCigarQ12094MF_0111634) - STRLEN(REPLACE(?templateMotifCigarQ12094MF_0111634, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionQ1209435) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ12094MF_0111636, 1, (STRLEN(?targetMotifMatchCigarQ12094MF_0111636) - STRLEN(REPLACE(?targetMotifMatchCigarQ12094MF_0111636, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ12094MF_0111636, 1, (STRLEN(?targetMotifMatchCigarQ12094MF_0111636) - STRLEN(REPLACE(?targetMotifMatchCigarQ12094MF_0111636, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) . BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0111637) - 1) AS ?thisPositionOn11) . BIND(?thisPositionOn11 AS ?thisPositionOn12) . BIND(?this AS ?pfs1t48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03146a7')) AS ?annotation7) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch53 faldo:location ?templateMotifSequenceMatchRegionQ1209454 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ1209456 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ12094MF_0111649 . ?templateMotifSequenceMatchRegionQ1209454 faldo:begin ?templateMotifSequenceMatchBeginQ1209455 . ?templateMotifSequenceMatchBeginQ1209455 faldo:position ?templateMotifSequenceMatchBeginPositionQ1209450 ; faldo:reference isoform:Q12094-1 . ?templateMotifSequenceProfileAlignmentOperationQ1209456 edam:has_input signature:MF_01116 ; rdf:type edam:operation_0300 . ?targetMotifMatch57 faldo:location ?targetMotifMatchRegionMatch58 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0111660 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ12094MF_0111651 . ?targetMotifMatchRegionMatch58 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0111659 . ?targetMotifMatchRegionMatchBeginMF_0111659 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0111652 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0111660 edam:has_input signature:MF_01116 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ12094MF_0111649, 1, (STRLEN(?templateMotifCigarQ12094MF_0111649) - STRLEN(REPLACE(?templateMotifCigarQ12094MF_0111649, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionQ1209450) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ12094MF_0111651, 1, (STRLEN(?targetMotifMatchCigarQ12094MF_0111651) - STRLEN(REPLACE(?targetMotifMatchCigarQ12094MF_0111651, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ12094MF_0111651, 1, (STRLEN(?targetMotifMatchCigarQ12094MF_0111651) - STRLEN(REPLACE(?targetMotifMatchCigarQ12094MF_0111651, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) . BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0111652) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER (REGEX('[VIL]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03146a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionQ1209469 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ1209471 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ12094MF_0111664 . ?templateMotifSequenceMatchRegionQ1209469 faldo:begin ?templateMotifSequenceMatchBeginQ1209470 . ?templateMotifSequenceMatchBeginQ1209470 faldo:position ?templateMotifSequenceMatchBeginPositionQ1209465 ; faldo:reference isoform:Q12094-1 . ?templateMotifSequenceProfileAlignmentOperationQ1209471 edam:has_input signature:MF_01116 ; rdf:type edam:operation_0300 . ?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0111675 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ12094MF_0111666 . ?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0111674 . ?targetMotifMatchRegionMatchBeginMF_0111674 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0111667 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0111675 edam:has_input signature:MF_01116 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ12094MF_0111664, 1, (STRLEN(?templateMotifCigarQ12094MF_0111664) - STRLEN(REPLACE(?templateMotifCigarQ12094MF_0111664, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionQ1209465) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ12094MF_0111666, 1, (STRLEN(?targetMotifMatchCigarQ12094MF_0111666) - STRLEN(REPLACE(?targetMotifMatchCigarQ12094MF_0111666, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ12094MF_0111666, 1, (STRLEN(?targetMotifMatchCigarQ12094MF_0111666) - STRLEN(REPLACE(?targetMotifMatchCigarQ12094MF_0111666, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) . BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0111667) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs1t78) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER (REGEX('[LI]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03146a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionQ1209484 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ1209486 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ12094MF_0111679 . ?templateMotifSequenceMatchRegionQ1209484 faldo:begin ?templateMotifSequenceMatchBeginQ1209485 . ?templateMotifSequenceMatchBeginQ1209485 faldo:position ?templateMotifSequenceMatchBeginPositionQ1209480 ; faldo:reference isoform:Q12094-1 . ?templateMotifSequenceProfileAlignmentOperationQ1209486 edam:has_input signature:MF_01116 ; rdf:type edam:operation_0300 . ?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0111690 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ12094MF_0111681 . ?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0111689 . ?targetMotifMatchRegionMatchBeginMF_0111689 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0111682 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0111690 edam:has_input signature:MF_01116 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ12094MF_0111679, 1, (STRLEN(?templateMotifCigarQ12094MF_0111679) - STRLEN(REPLACE(?templateMotifCigarQ12094MF_0111679, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionQ1209480) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ12094MF_0111681, 1, (STRLEN(?targetMotifMatchCigarQ12094MF_0111681) - STRLEN(REPLACE(?targetMotifMatchCigarQ12094MF_0111681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ12094MF_0111681, 1, (STRLEN(?targetMotifMatchCigarQ12094MF_0111681) - STRLEN(REPLACE(?targetMotifMatchCigarQ12094MF_0111681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) . BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0111682) - 1) AS ?thisPositionOn32) . BIND(?thisPositionOn32 AS ?thisPositionOn33) . BIND(?this AS ?pfs1t93) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) . FILTER (REGEX('[WY]', SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03146a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . BIND(?this AS ?case2) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . BIND(?this AS ?case3) . } OPTIONAL { ?this a up:Protein . VALUES ?supertaxon94 {taxon:7742 taxon:4751} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon94 . BIND(?this AS ?case4) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon95 {taxon:4751 taxon:7742} ?thisOrganism rdfs:subClassOf+ ?supertaxon95 . })) . BIND(?this AS ?case5) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_03146http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_03146#construct
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