| http://purl.uniprot.org/unirules/MF_03150#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:845161 up:source unirule:MF_03150 .
_:845162 up:source unirule:MF_03150 .
_:845163 up:source unirule:MF_03150 .
_:845164 up:source unirule:MF_03150 .
_:845165 up:source unirule:MF_03150 .
_:845166 up:source unirule:MF_03150 .
_:845167 up:source unirule:MF_03150 .
_:845168 up:source unirule:MF_03150 .
_:845169 up:source unirule:MF_03150 .
_:845170 up:source unirule:MF_03150 .
_:845171 up:source unirule:MF_03150 .
_:845172 up:source unirule:MF_03150 .
_:845173 up:source unirule:MF_03150 .
_:845174 up:source unirule:MF_03150 .
_:845175 up:source unirule:MF_03150 .
_:845176 up:source unirule:MF_03150 .
_:845177 up:source unirule:MF_03150 .
_:845178 up:source unirule:MF_03150 .
_:845179 up:source unirule:MF_03150 .
_:845180 up:source unirule:MF_03150 .
_:845181 up:source unirule:MF_03150 .
_:845182 up:source unirule:MF_03150 .
_:845183 up:source unirule:MF_03150 .
?this up:annotation ?annotation0 ,
?annotation2 ;
up:classifiedWith GO:0005739 ,
GO:0016884 ,
GO:0030956 ,
GO:0032543 ,
GO:0050567 ,
GO:0070681 ,
keyword:436 ,
keyword:496 ,
keyword:547 ,
keyword:648 ,
keyword:67 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity ;
up:enzymeClass .
?annotation2 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the amidase family. GatA subfamily.' .
?case4 up:alternativeName ?name6 ;
up:recommendedName ?name5 .
?name5 up:ecName '6.3.5.7' ;
up:fullName 'Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial' ;
up:shortName 'Glu-AdT subunit A' ;
rdf:type up:Structured_Name .
?name6 up:fullName 'Glutaminyl-tRNA synthase-like protein 1' ;
rdf:type up:Structured_Name .
?case7 up:classifiedWith GO:0009507 ,
keyword:150 ,
keyword:934 ;
up:recommendedName ?name8 .
?name8 up:ecName '6.3.5.7' ;
up:fullName 'Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial' ;
up:shortName 'Glu-AdT subunit A' ;
rdf:type up:Structured_Name .
?case11 up:recommendedName ?name12 .
?name12 up:ecName '6.3.5.7' ;
up:fullName 'Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial' ;
up:shortName 'Glu-AdT subunit A' ;
rdf:type up:Structured_Name .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Acyl-ester intermediate' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
_:845184 a rdf:Statement ;
up:attribution _:845161 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:845185 a rdf:Statement ;
up:attribution _:845162 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:845186 a rdf:Statement ;
up:attribution _:845163 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:845187 a rdf:Statement ;
up:attribution _:845164 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:845188 a rdf:Statement ;
up:attribution _:845165 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:845189 a rdf:Statement ;
up:attribution _:845166 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:845190 a rdf:Statement ;
up:attribution _:845167 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:845191 a rdf:Statement ;
up:attribution _:845168 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005739 .
_:845192 a rdf:Statement ;
up:attribution _:845169 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030956 .
_:845193 a rdf:Statement ;
up:attribution _:845170 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050567 .
_:845194 a rdf:Statement ;
up:attribution _:845171 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016884 .
_:845195 a rdf:Statement ;
up:attribution _:845172 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070681 .
_:845196 a rdf:Statement ;
up:attribution _:845173 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0032543 .
_:845197 a rdf:Statement ;
up:attribution _:845174 ;
rdf:subject ?case4 ;
rdf:predicate up:recommendedName ;
rdf:object ?name5 .
_:845198 a rdf:Statement ;
up:attribution _:845175 ;
rdf:subject ?case4 ;
rdf:predicate up:alternativeName ;
rdf:object ?name6 .
_:845199 a rdf:Statement ;
up:attribution _:845176 ;
rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:845200 a rdf:Statement ;
up:attribution _:845177 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:150 .
_:845201 a rdf:Statement ;
up:attribution _:845178 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:934 .
_:845202 a rdf:Statement ;
up:attribution _:845179 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009507 .
_:845203 a rdf:Statement ;
up:attribution _:845180 ;
rdf:subject ?case11 ;
rdf:predicate up:recommendedName ;
rdf:object ?name12 .
_:845204 a rdf:Statement ;
up:source unirule:MF_03150 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:845205 a rdf:Statement ;
up:attribution _:845181 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:845206 a rdf:Statement ;
up:source unirule:MF_03150 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:845207 a rdf:Statement ;
up:attribution _:845182 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:845208 a rdf:Statement ;
up:source unirule:MF_03150 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:845209 a rdf:Statement ;
up:attribution _:845183 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03150
#Rule MF_03150 Created by:? on:2012-08-22 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00120 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03150a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03150a2')) AS ?annotation2) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch36 faldo:location ?templateMotifSequenceMatchRegionQ9H0R637 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H0R639 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9H0R6MF_0012032 .
?templateMotifSequenceMatchRegionQ9H0R637 faldo:begin ?templateMotifSequenceMatchBeginQ9H0R638 .
?templateMotifSequenceMatchBeginQ9H0R638 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H0R633 ;
faldo:reference isoform:Q9H0R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9H0R639 edam:has_input signature:MF_00120 ;
rdf:type edam:operation_0300 .
?targetMotifMatch40 faldo:location ?targetMotifMatchRegionMatch41 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0012043 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9H0R6MF_0012034 .
?targetMotifMatchRegionMatch41 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0012042 .
?targetMotifMatchRegionMatchBeginMF_0012042 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012035 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0012043 edam:has_input signature:MF_00120 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H0R6MF_0012032, 1, (STRLEN(?templateMotifCigarQ9H0R6MF_0012032) - STRLEN(REPLACE(?templateMotifCigarQ9H0R6MF_0012032, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionQ9H0R633) + 1)), '}'), '')))), '[a-z]', '')) AS ?step144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H0R6MF_0012034, 1, (STRLEN(?targetMotifMatchCigarQ9H0R6MF_0012034) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H0R6MF_0012034, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H0R6MF_0012034, 1, (STRLEN(?targetMotifMatchCigarQ9H0R6MF_0012034) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H0R6MF_0012034, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), '')))), '[^-]', ''))) AS ?step245) .
BIND(((?step245 + ?targetMotifMatchRegionMatchBeginPositionMF_0012035) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03150a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch51 faldo:location ?templateMotifSequenceMatchRegionQ9H0R652 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H0R654 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9H0R6MF_0012047 .
?templateMotifSequenceMatchRegionQ9H0R652 faldo:begin ?templateMotifSequenceMatchBeginQ9H0R653 .
?templateMotifSequenceMatchBeginQ9H0R653 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H0R648 ;
faldo:reference isoform:Q9H0R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9H0R654 edam:has_input signature:MF_00120 ;
rdf:type edam:operation_0300 .
?targetMotifMatch55 faldo:location ?targetMotifMatchRegionMatch56 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0012058 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9H0R6MF_0012049 .
?targetMotifMatchRegionMatch56 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0012057 .
?targetMotifMatchRegionMatchBeginMF_0012057 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012050 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0012058 edam:has_input signature:MF_00120 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H0R6MF_0012047, 1, (STRLEN(?templateMotifCigarQ9H0R6MF_0012047) - STRLEN(REPLACE(?templateMotifCigarQ9H0R6MF_0012047, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionQ9H0R648) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H0R6MF_0012049, 1, (STRLEN(?targetMotifMatchCigarQ9H0R6MF_0012049) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H0R6MF_0012049, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H0R6MF_0012049, 1, (STRLEN(?targetMotifMatchCigarQ9H0R6MF_0012049) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H0R6MF_0012049, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0012050) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03150a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionQ9H0R667 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H0R669 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9H0R6MF_0012062 .
?templateMotifSequenceMatchRegionQ9H0R667 faldo:begin ?templateMotifSequenceMatchBeginQ9H0R668 .
?templateMotifSequenceMatchBeginQ9H0R668 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H0R663 ;
faldo:reference isoform:Q9H0R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9H0R669 edam:has_input signature:MF_00120 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0012073 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9H0R6MF_0012064 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0012072 .
?targetMotifMatchRegionMatchBeginMF_0012072 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012065 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0012073 edam:has_input signature:MF_00120 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H0R6MF_0012062, 1, (STRLEN(?templateMotifCigarQ9H0R6MF_0012062) - STRLEN(REPLACE(?templateMotifCigarQ9H0R6MF_0012062, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionQ9H0R663) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H0R6MF_0012064, 1, (STRLEN(?targetMotifMatchCigarQ9H0R6MF_0012064) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H0R6MF_0012064, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H0R6MF_0012064, 1, (STRLEN(?targetMotifMatchCigarQ9H0R6MF_0012064) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H0R6MF_0012064, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0012065) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03150a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:50557 .
BIND(?this AS ?case3) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case4) .
BIND(URI(CONCAT(STR(?this), '#MF_03150a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_03150a6')) AS ?name6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(?this AS ?case7) .
BIND(URI(CONCAT(STR(?this), '#MF_03150a8')) AS ?name8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:147537 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33090 .
})) .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon77 {taxon:7742 taxon:33090}
?thisOrganism rdfs:subClassOf+ ?supertaxon77 .
})) .
BIND(?this AS ?case11) .
BIND(URI(CONCAT(STR(?this), '#MF_03150a12')) AS ?name12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon78 {taxon:147537 taxon:7742}
?thisOrganism rdfs:subClassOf+ ?supertaxon78 .
})) .
BIND(?this AS ?case13) .
}
}
"xsd:string |
