| http://purl.uniprot.org/unirules/MF_03198#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:875656 up:source unirule:MF_03198 .
_:875657 up:source unirule:MF_03198 .
_:875658 up:source unirule:MF_03198 .
_:875659 up:source unirule:MF_03198 .
_:875660 up:source unirule:MF_03198 .
_:875661 up:source unirule:MF_03198 .
_:875662 up:source unirule:MF_03198 .
_:875663 up:source unirule:MF_03198 .
_:875664 up:source unirule:MF_03198 .
_:875665 up:source unirule:MF_03198 .
_:875666 up:source unirule:MF_03198 .
_:875667 up:source unirule:MF_03198 .
_:875668 up:source unirule:MF_03198 .
_:875669 up:source unirule:MF_03198 .
_:875670 up:source unirule:MF_03198 .
_:875671 up:source unirule:MF_03198 .
_:875672 up:source unirule:MF_03198 .
_:875673 up:source unirule:MF_03198 .
?this up:alternativeName ?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0005737 ,
GO:0016279 ,
GO:0018022 ,
keyword:489 ,
keyword:808 ,
keyword:949 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.-' ;
up:fullName ?nameValue1 ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Elongation factor methyltransferase 6' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'EFM6' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'S-adenosyl-L-methionine-dependent protein-lysine N-methyltransferase that methylates elongation factor 1-alpha.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. METTL21 family. EFM6 subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:59789 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:59789 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:59789 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:59789 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:59789 .
_:875674 a rdf:Statement ;
up:attribution _:875656 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:875675 a rdf:Statement ;
up:attribution _:875657 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:875676 a rdf:Statement ;
up:attribution _:875658 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:875677 a rdf:Statement ;
up:attribution _:875659 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:875678 a rdf:Statement ;
up:attribution _:875660 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:875679 a rdf:Statement ;
up:attribution _:875661 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:875680 a rdf:Statement ;
up:attribution _:875662 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:875681 a rdf:Statement ;
up:attribution _:875663 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:875682 a rdf:Statement ;
up:attribution _:875664 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:875683 a rdf:Statement ;
up:attribution _:875665 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:875684 a rdf:Statement ;
up:attribution _:875666 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:875685 a rdf:Statement ;
up:attribution _:875667 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016279 .
_:875686 a rdf:Statement ;
up:attribution _:875668 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0018022 .
_:875687 a rdf:Statement ;
up:source unirule:MF_03198 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:875688 a rdf:Statement ;
up:attribution _:875669 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:875689 a rdf:Statement ;
up:source unirule:MF_03198 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:875690 a rdf:Statement ;
up:attribution _:875670 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:875691 a rdf:Statement ;
up:source unirule:MF_03198 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:875692 a rdf:Statement ;
up:attribution _:875671 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:875693 a rdf:Statement ;
up:source unirule:MF_03198 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:875694 a rdf:Statement ;
up:attribution _:875672 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:875695 a rdf:Statement ;
up:source unirule:MF_03198 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:875696 a rdf:Statement ;
up:attribution _:875673 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03198
#Rule MF_03198 Created by:? on:2015-10-07 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03198 .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(URI(CONCAT(STR(?this), '#MF_03198a0')) AS ?name0) .
OPTIONAL {
?this up:encodedBy ?gene46 .
?gene46 up:locusName ?geneLocus44 .
}
OPTIONAL {
?this up:encodedBy ?gene46 .
?gene46 up:orfName ?geneOrf45 .
}
BIND(IF(BOUND(?geneLocus44), ?geneLocus44, ?geneOrf45) AS ?part43) .
BIND(CONCAT('Protein-lysine N-methyltransferase ', ?part43) AS ?nameValue1) .
BIND(URI(CONCAT(STR(?this), '#MF_03198a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_03198a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03198a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03198a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch51 faldo:location ?templateMotifSequenceMatchRegionP5397052 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5397054 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53970MF_0319847 .
?templateMotifSequenceMatchRegionP5397052 faldo:begin ?templateMotifSequenceMatchBeginP5397053 .
?templateMotifSequenceMatchBeginP5397053 faldo:position ?templateMotifSequenceMatchBeginPositionP5397048 ;
faldo:reference isoform:P53970-1 .
?templateMotifSequenceProfileAlignmentOperationP5397054 edam:has_input signature:MF_03198 ;
rdf:type edam:operation_0300 .
?targetMotifMatch55 faldo:location ?targetMotifMatchRegionMatch56 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0319858 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53970MF_0319849 .
?targetMotifMatchRegionMatch56 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0319857 .
?targetMotifMatchRegionMatchBeginMF_0319857 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0319850 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0319858 edam:has_input signature:MF_03198 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53970MF_0319847, 1, (STRLEN(?templateMotifCigarP53970MF_0319847) - STRLEN(REPLACE(?templateMotifCigarP53970MF_0319847, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionP5397048) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53970MF_0319849, 1, (STRLEN(?targetMotifMatchCigarP53970MF_0319849) - STRLEN(REPLACE(?targetMotifMatchCigarP53970MF_0319849, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53970MF_0319849, 1, (STRLEN(?targetMotifMatchCigarP53970MF_0319849) - STRLEN(REPLACE(?targetMotifMatchCigarP53970MF_0319849, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0319850) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53970MF_0319847, 1, (STRLEN(?templateMotifCigarP53970MF_0319847) - STRLEN(REPLACE(?templateMotifCigarP53970MF_0319847, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP5397048) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53970MF_0319849, 1, (STRLEN(?targetMotifMatchCigarP53970MF_0319849) - STRLEN(REPLACE(?targetMotifMatchCigarP53970MF_0319849, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53970MF_0319849, 1, (STRLEN(?targetMotifMatchCigarP53970MF_0319849) - STRLEN(REPLACE(?targetMotifMatchCigarP53970MF_0319849, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0319850) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('G[SA]G', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03198a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionP5397069 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5397071 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53970MF_0319864 .
?templateMotifSequenceMatchRegionP5397069 faldo:begin ?templateMotifSequenceMatchBeginP5397070 .
?templateMotifSequenceMatchBeginP5397070 faldo:position ?templateMotifSequenceMatchBeginPositionP5397065 ;
faldo:reference isoform:P53970-1 .
?templateMotifSequenceProfileAlignmentOperationP5397071 edam:has_input signature:MF_03198 ;
rdf:type edam:operation_0300 .
?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0319875 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53970MF_0319866 .
?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0319874 .
?targetMotifMatchRegionMatchBeginMF_0319874 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0319867 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0319875 edam:has_input signature:MF_03198 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53970MF_0319864, 1, (STRLEN(?templateMotifCigarP53970MF_0319864) - STRLEN(REPLACE(?templateMotifCigarP53970MF_0319864, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP5397065) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53970MF_0319866, 1, (STRLEN(?targetMotifMatchCigarP53970MF_0319866) - STRLEN(REPLACE(?targetMotifMatchCigarP53970MF_0319866, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53970MF_0319866, 1, (STRLEN(?targetMotifMatchCigarP53970MF_0319866) - STRLEN(REPLACE(?targetMotifMatchCigarP53970MF_0319866, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0319867) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_03198a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP5397084 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5397086 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53970MF_0319879 .
?templateMotifSequenceMatchRegionP5397084 faldo:begin ?templateMotifSequenceMatchBeginP5397085 .
?templateMotifSequenceMatchBeginP5397085 faldo:position ?templateMotifSequenceMatchBeginPositionP5397080 ;
faldo:reference isoform:P53970-1 .
?templateMotifSequenceProfileAlignmentOperationP5397086 edam:has_input signature:MF_03198 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0319890 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53970MF_0319881 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0319889 .
?targetMotifMatchRegionMatchBeginMF_0319889 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0319882 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0319890 edam:has_input signature:MF_03198 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53970MF_0319879, 1, (STRLEN(?templateMotifCigarP53970MF_0319879) - STRLEN(REPLACE(?templateMotifCigarP53970MF_0319879, CONCAT('^(?:-*[^-]){', STR(((115 - ?templateMotifSequenceMatchBeginPositionP5397080) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53970MF_0319881, 1, (STRLEN(?targetMotifMatchCigarP53970MF_0319881) - STRLEN(REPLACE(?targetMotifMatchCigarP53970MF_0319881, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53970MF_0319881, 1, (STRLEN(?targetMotifMatchCigarP53970MF_0319881) - STRLEN(REPLACE(?targetMotifMatchCigarP53970MF_0319881, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0319882) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03198a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP5397099 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53970101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53970MF_0319894 .
?templateMotifSequenceMatchRegionP5397099 faldo:begin ?templateMotifSequenceMatchBeginP53970100 .
?templateMotifSequenceMatchBeginP53970100 faldo:position ?templateMotifSequenceMatchBeginPositionP5397095 ;
faldo:reference isoform:P53970-1 .
?templateMotifSequenceProfileAlignmentOperationP53970101 edam:has_input signature:MF_03198 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03198105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53970MF_0319896 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03198104 .
?targetMotifMatchRegionMatchBeginMF_03198104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0319897 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03198105 edam:has_input signature:MF_03198 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53970MF_0319894, 1, (STRLEN(?templateMotifCigarP53970MF_0319894) - STRLEN(REPLACE(?templateMotifCigarP53970MF_0319894, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP5397095) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53970MF_0319896, 1, (STRLEN(?targetMotifMatchCigarP53970MF_0319896) - STRLEN(REPLACE(?targetMotifMatchCigarP53970MF_0319896, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53970MF_0319896, 1, (STRLEN(?targetMotifMatchCigarP53970MF_0319896) - STRLEN(REPLACE(?targetMotifMatchCigarP53970MF_0319896, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0319897) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_03198a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP53970114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53970116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53970MF_03198109 .
?templateMotifSequenceMatchRegionP53970114 faldo:begin ?templateMotifSequenceMatchBeginP53970115 .
?templateMotifSequenceMatchBeginP53970115 faldo:position ?templateMotifSequenceMatchBeginPositionP53970110 ;
faldo:reference isoform:P53970-1 .
?templateMotifSequenceProfileAlignmentOperationP53970116 edam:has_input signature:MF_03198 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03198120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53970MF_03198111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03198119 .
?targetMotifMatchRegionMatchBeginMF_03198119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03198112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03198120 edam:has_input signature:MF_03198 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53970MF_03198109, 1, (STRLEN(?templateMotifCigarP53970MF_03198109) - STRLEN(REPLACE(?templateMotifCigarP53970MF_03198109, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP53970110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53970MF_03198111, 1, (STRLEN(?targetMotifMatchCigarP53970MF_03198111) - STRLEN(REPLACE(?targetMotifMatchCigarP53970MF_03198111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53970MF_03198111, 1, (STRLEN(?targetMotifMatchCigarP53970MF_03198111) - STRLEN(REPLACE(?targetMotifMatchCigarP53970MF_03198111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_03198112) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER (REGEX('[AGS]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03198a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
}
"xsd:string |
