| http://purl.uniprot.org/unirules/MF_03226#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:890223 up:source unirule:MF_03226 .
_:890224 up:source unirule:MF_03226 .
_:890225 up:source unirule:MF_03226 .
_:890226 up:source unirule:MF_03226 .
_:890227 up:source unirule:MF_03226 .
_:890228 up:source unirule:MF_03226 .
_:890229 up:source unirule:MF_03226 .
_:890230 up:source unirule:MF_03226 .
_:890231 up:source unirule:MF_03226 .
_:890232 up:source unirule:MF_03226 .
_:890233 up:source unirule:MF_03226 .
_:890234 up:source unirule:MF_03226 .
_:890235 up:source unirule:MF_03226 .
_:890236 up:source unirule:MF_03226 .
_:890237 up:source unirule:MF_03226 .
_:890238 up:source unirule:MF_03226 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0000349 ,
GO:0071006 ,
keyword:539 ,
keyword:747 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Splicing factor YJU2' ;
rdf:type up:Structured_Name .
?annotation1 a up:Subunit_Annotation ;
rdfs:comment 'Component of the spliceosome. Present in the activated B complex, the catalytically activated B* complex which catalyzes the branching, the catalytic step 1 C complex catalyzing the exon ligation, and the postcatalytic P complex containing the ligated exons (mRNA) and the excised lariat intron.' .
?annotation2 a up:Subcellular_Location_Annotation .
?annotation2li3 up:cellularComponent .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the CWC16 family. YJU2 subfamily.' .
?case5 up:classifiedWith keyword:479 ,
keyword:862 .
?case7 up:classifiedWith GO:0000350 ,
GO:0071007 .
?pfs10 up:annotation ?annotation11 ,
?annotation17 ,
?annotation23 ,
?annotation29 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:29105 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:29105 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:29105 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:29105 .
_:890239 a rdf:Statement ;
up:attribution _:890223 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:890240 a rdf:Statement ;
up:attribution _:890224 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:890241 a rdf:Statement ;
up:attribution _:890225 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:890242 a rdf:Statement ;
up:attribution _:890226 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:890243 a rdf:Statement ;
up:attribution _:890227 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:890244 a rdf:Statement ;
up:attribution _:890228 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:747 .
_:890245 a rdf:Statement ;
up:attribution _:890229 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0071006 .
_:890246 a rdf:Statement ;
up:attribution _:890230 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000349 .
_:890247 a rdf:Statement ;
up:attribution _:890231 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:890248 a rdf:Statement ;
up:attribution _:890232 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:890249 a rdf:Statement ;
up:attribution _:890233 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0071007 .
_:890250 a rdf:Statement ;
up:attribution _:890234 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000350 .
_:890251 a rdf:Statement ;
up:source unirule:MF_03226 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:890252 a rdf:Statement ;
up:attribution _:890235 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:890253 a rdf:Statement ;
up:source unirule:MF_03226 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:890254 a rdf:Statement ;
up:attribution _:890236 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:890255 a rdf:Statement ;
up:source unirule:MF_03226 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:890256 a rdf:Statement ;
up:attribution _:890237 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:890257 a rdf:Statement ;
up:source unirule:MF_03226 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:890258 a rdf:Statement ;
up:attribution _:890238 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03226
#Rule MF_03226 Created by:? on:2018-12-19 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03226 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03226a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03226a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_03226a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03226a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionP2832040 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2832042 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28320MF_0322635 .
?templateMotifSequenceMatchRegionP2832040 faldo:begin ?templateMotifSequenceMatchBeginP2832041 .
?templateMotifSequenceMatchBeginP2832041 faldo:position ?templateMotifSequenceMatchBeginPositionP2832036 ;
faldo:reference isoform:P28320-1 .
?templateMotifSequenceProfileAlignmentOperationP2832042 edam:has_input signature:MF_03226 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0322646 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28320MF_0322637 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0322645 .
?targetMotifMatchRegionMatchBeginMF_0322645 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0322638 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0322646 edam:has_input signature:MF_03226 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28320MF_0322635, 1, (STRLEN(?templateMotifCigarP28320MF_0322635) - STRLEN(REPLACE(?templateMotifCigarP28320MF_0322635, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP2832036) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28320MF_0322637, 1, (STRLEN(?targetMotifMatchCigarP28320MF_0322637) - STRLEN(REPLACE(?targetMotifMatchCigarP28320MF_0322637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28320MF_0322637, 1, (STRLEN(?targetMotifMatchCigarP28320MF_0322637) - STRLEN(REPLACE(?targetMotifMatchCigarP28320MF_0322637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0322638) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28320MF_0322635, 1, (STRLEN(?templateMotifCigarP28320MF_0322635) - STRLEN(REPLACE(?templateMotifCigarP28320MF_0322635, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionP2832036) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28320MF_0322637, 1, (STRLEN(?targetMotifMatchCigarP28320MF_0322637) - STRLEN(REPLACE(?targetMotifMatchCigarP28320MF_0322637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28320MF_0322637, 1, (STRLEN(?targetMotifMatchCigarP28320MF_0322637) - STRLEN(REPLACE(?targetMotifMatchCigarP28320MF_0322637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0322638) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28320MF_0322635, 1, (STRLEN(?templateMotifCigarP28320MF_0322635) - STRLEN(REPLACE(?templateMotifCigarP28320MF_0322635, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP2832036) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28320MF_0322637, 1, (STRLEN(?targetMotifMatchCigarP28320MF_0322637) - STRLEN(REPLACE(?targetMotifMatchCigarP28320MF_0322637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28320MF_0322637, 1, (STRLEN(?targetMotifMatchCigarP28320MF_0322637) - STRLEN(REPLACE(?targetMotifMatchCigarP28320MF_0322637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0322638) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28320MF_0322635, 1, (STRLEN(?templateMotifCigarP28320MF_0322635) - STRLEN(REPLACE(?templateMotifCigarP28320MF_0322635, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP2832036) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28320MF_0322637, 1, (STRLEN(?targetMotifMatchCigarP28320MF_0322637) - STRLEN(REPLACE(?targetMotifMatchCigarP28320MF_0322637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28320MF_0322637, 1, (STRLEN(?targetMotifMatchCigarP28320MF_0322637) - STRLEN(REPLACE(?targetMotifMatchCigarP28320MF_0322637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0322638) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'C')) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag59) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag59, ?UNBOUND_VARIABLE) AS ?case5) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4892 .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon60 {taxon:4892 taxon:7742}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon60 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon61 {taxon:7742 taxon:4892}
?thisOrganism rdfs:subClassOf+ ?supertaxon61 .
})) .
BIND(?this AS ?case9) .
}
}
"xsd:string |
