| http://purl.uniprot.org/unirules/MF_03227#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:890528 up:source unirule:MF_03227 .
_:890529 up:source unirule:MF_03227 .
_:890530 up:source unirule:MF_03227 .
_:890531 up:source unirule:MF_03227 .
_:890532 up:source unirule:MF_03227 .
_:890533 up:source unirule:MF_03227 .
_:890534 up:source unirule:MF_03227 .
_:890535 up:source unirule:MF_03227 .
_:890536 up:source unirule:MF_03227 .
_:890537 up:source unirule:MF_03227 .
_:890538 up:source unirule:MF_03227 .
_:890539 up:source unirule:MF_03227 .
_:890540 up:source unirule:MF_03227 .
_:890541 up:source unirule:MF_03227 .
_:890542 up:source unirule:MF_03227 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0006084 ,
GO:0016740 ,
GO:0046358 ,
keyword:276 ,
keyword:443 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.8.3.-' ;
up:fullName 'Butyryl-CoA:acetate CoA-transferase' ;
up:shortName 'Butyryl-CoA CoA-transferase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Coenzyme A-transferase that converts butyryl-CoA to butyrate.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity .
?annotation4 a up:Pathway_Annotation ;
rdfs:comment 'Lipid metabolism; butanoate metabolism.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the acetyl-CoA hydrolase/transferase family. Butyryl-CoA CoA-transferase subfamily.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
up:ligand ?ligand10 ;
rdf:type up:Binding_Site_Annotation .
?pfsb8 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?ligand10 rdfs:subClassOf chebi:57287 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment '5-glutamyl coenzyme A thioester intermediate' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:57287 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:57287 .
_:890543 a rdf:Statement ;
up:attribution _:890528 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:890544 a rdf:Statement ;
up:attribution _:890529 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:890545 a rdf:Statement ;
up:attribution _:890530 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:890546 a rdf:Statement ;
up:attribution _:890531 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:890547 a rdf:Statement ;
up:attribution _:890532 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:890548 a rdf:Statement ;
up:attribution _:890533 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:276 .
_:890549 a rdf:Statement ;
up:attribution _:890534 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:890550 a rdf:Statement ;
up:attribution _:890535 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:890551 a rdf:Statement ;
up:attribution _:890536 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016740 .
_:890552 a rdf:Statement ;
up:attribution _:890537 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006084 .
_:890553 a rdf:Statement ;
up:attribution _:890538 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046358 .
_:890554 a rdf:Statement ;
up:source unirule:MF_03227 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:890555 a rdf:Statement ;
up:attribution _:890539 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:890556 a rdf:Statement ;
up:source unirule:MF_03227 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:890557 a rdf:Statement ;
up:attribution _:890540 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:890558 a rdf:Statement ;
up:source unirule:MF_03227 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:890559 a rdf:Statement ;
up:attribution _:890541 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:890560 a rdf:Statement ;
up:source unirule:MF_03227 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:890561 a rdf:Statement ;
up:attribution _:890542 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03227
#Rule MF_03227 Created by:? on:2019-06-17 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03227 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_03227a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03227a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_03227a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03227a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03227a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionG2SYC038 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG2SYC040 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG2SYC0MF_0322733 .
?templateMotifSequenceMatchRegionG2SYC038 faldo:begin ?templateMotifSequenceMatchBeginG2SYC039 .
?templateMotifSequenceMatchBeginG2SYC039 faldo:position ?templateMotifSequenceMatchBeginPositionG2SYC034 ;
faldo:reference isoform:G2SYC0-1 .
?templateMotifSequenceProfileAlignmentOperationG2SYC040 edam:has_input signature:MF_03227 ;
rdf:type edam:operation_0300 .
?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0322744 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG2SYC0MF_0322735 .
?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0322743 .
?targetMotifMatchRegionMatchBeginMF_0322743 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0322736 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0322744 edam:has_input signature:MF_03227 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG2SYC0MF_0322733, 1, (STRLEN(?templateMotifCigarG2SYC0MF_0322733) - STRLEN(REPLACE(?templateMotifCigarG2SYC0MF_0322733, CONCAT('^(?:-*[^-]){', STR(((220 - ?templateMotifSequenceMatchBeginPositionG2SYC034) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG2SYC0MF_0322735, 1, (STRLEN(?targetMotifMatchCigarG2SYC0MF_0322735) - STRLEN(REPLACE(?targetMotifMatchCigarG2SYC0MF_0322735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG2SYC0MF_0322735, 1, (STRLEN(?targetMotifMatchCigarG2SYC0MF_0322735) - STRLEN(REPLACE(?targetMotifMatchCigarG2SYC0MF_0322735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0322736) - 1) AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG2SYC0MF_0322733, 1, (STRLEN(?templateMotifCigarG2SYC0MF_0322733) - STRLEN(REPLACE(?templateMotifCigarG2SYC0MF_0322733, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionG2SYC034) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG2SYC0MF_0322735, 1, (STRLEN(?targetMotifMatchCigarG2SYC0MF_0322735) - STRLEN(REPLACE(?targetMotifMatchCigarG2SYC0MF_0322735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG2SYC0MF_0322735, 1, (STRLEN(?targetMotifMatchCigarG2SYC0MF_0322735) - STRLEN(REPLACE(?targetMotifMatchCigarG2SYC0MF_0322735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0322736) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX]M', SUBSTR(?thisSequenceValue, ?thisPositionOn11, (?thisPositionOn12 - ?thisPositionOn11)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03227a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch54 faldo:location ?templateMotifSequenceMatchRegionG2SYC055 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG2SYC057 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG2SYC0MF_0322750 .
?templateMotifSequenceMatchRegionG2SYC055 faldo:begin ?templateMotifSequenceMatchBeginG2SYC056 .
?templateMotifSequenceMatchBeginG2SYC056 faldo:position ?templateMotifSequenceMatchBeginPositionG2SYC051 ;
faldo:reference isoform:G2SYC0-1 .
?templateMotifSequenceProfileAlignmentOperationG2SYC057 edam:has_input signature:MF_03227 ;
rdf:type edam:operation_0300 .
?targetMotifMatch58 faldo:location ?targetMotifMatchRegionMatch59 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0322761 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG2SYC0MF_0322752 .
?targetMotifMatchRegionMatch59 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0322760 .
?targetMotifMatchRegionMatchBeginMF_0322760 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0322753 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0322761 edam:has_input signature:MF_03227 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG2SYC0MF_0322750, 1, (STRLEN(?templateMotifCigarG2SYC0MF_0322750) - STRLEN(REPLACE(?templateMotifCigarG2SYC0MF_0322750, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionG2SYC051) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG2SYC0MF_0322752, 1, (STRLEN(?targetMotifMatchCigarG2SYC0MF_0322752) - STRLEN(REPLACE(?targetMotifMatchCigarG2SYC0MF_0322752, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG2SYC0MF_0322752, 1, (STRLEN(?targetMotifMatchCigarG2SYC0MF_0322752) - STRLEN(REPLACE(?targetMotifMatchCigarG2SYC0MF_0322752, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0322753) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03227a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionG2SYC070 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG2SYC072 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG2SYC0MF_0322765 .
?templateMotifSequenceMatchRegionG2SYC070 faldo:begin ?templateMotifSequenceMatchBeginG2SYC071 .
?templateMotifSequenceMatchBeginG2SYC071 faldo:position ?templateMotifSequenceMatchBeginPositionG2SYC066 ;
faldo:reference isoform:G2SYC0-1 .
?templateMotifSequenceProfileAlignmentOperationG2SYC072 edam:has_input signature:MF_03227 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0322776 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG2SYC0MF_0322767 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0322775 .
?targetMotifMatchRegionMatchBeginMF_0322775 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0322768 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0322776 edam:has_input signature:MF_03227 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG2SYC0MF_0322765, 1, (STRLEN(?templateMotifCigarG2SYC0MF_0322765) - STRLEN(REPLACE(?templateMotifCigarG2SYC0MF_0322765, CONCAT('^(?:-*[^-]){', STR(((320 - ?templateMotifSequenceMatchBeginPositionG2SYC066) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG2SYC0MF_0322767, 1, (STRLEN(?targetMotifMatchCigarG2SYC0MF_0322767) - STRLEN(REPLACE(?targetMotifMatchCigarG2SYC0MF_0322767, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG2SYC0MF_0322767, 1, (STRLEN(?targetMotifMatchCigarG2SYC0MF_0322767) - STRLEN(REPLACE(?targetMotifMatchCigarG2SYC0MF_0322767, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0322768) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER (REGEX('[ILVM]', SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03227a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionG2SYC085 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG2SYC087 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG2SYC0MF_0322780 .
?templateMotifSequenceMatchRegionG2SYC085 faldo:begin ?templateMotifSequenceMatchBeginG2SYC086 .
?templateMotifSequenceMatchBeginG2SYC086 faldo:position ?templateMotifSequenceMatchBeginPositionG2SYC081 ;
faldo:reference isoform:G2SYC0-1 .
?templateMotifSequenceProfileAlignmentOperationG2SYC087 edam:has_input signature:MF_03227 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0322791 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG2SYC0MF_0322782 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0322790 .
?targetMotifMatchRegionMatchBeginMF_0322790 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0322783 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0322791 edam:has_input signature:MF_03227 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG2SYC0MF_0322780, 1, (STRLEN(?templateMotifCigarG2SYC0MF_0322780) - STRLEN(REPLACE(?templateMotifCigarG2SYC0MF_0322780, CONCAT('^(?:-*[^-]){', STR(((343 - ?templateMotifSequenceMatchBeginPositionG2SYC081) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG2SYC0MF_0322782, 1, (STRLEN(?targetMotifMatchCigarG2SYC0MF_0322782) - STRLEN(REPLACE(?targetMotifMatchCigarG2SYC0MF_0322782, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG2SYC0MF_0322782, 1, (STRLEN(?targetMotifMatchCigarG2SYC0MF_0322782) - STRLEN(REPLACE(?targetMotifMatchCigarG2SYC0MF_0322782, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0322783) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03227a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
}
"xsd:string |
