| http://purl.uniprot.org/unirules/MF_04034#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:906806 up:source unirule:MF_04034 .
_:906807 up:source unirule:MF_04034 .
_:906808 up:source unirule:MF_04034 .
_:906809 up:source unirule:MF_04034 .
_:906810 up:source unirule:MF_04034 .
_:906811 up:source unirule:MF_04034 .
_:906812 up:source unirule:MF_04034 .
_:906813 up:source unirule:MF_04034 .
_:906814 up:source unirule:MF_04034 .
_:906815 up:source unirule:MF_04034 .
_:906816 up:source unirule:MF_04034 .
_:906817 up:source unirule:MF_04034 .
_:906818 up:source unirule:MF_04034 .
_:906819 up:source unirule:MF_04034 .
_:906820 up:source unirule:MF_04034 .
_:906821 up:source unirule:MF_04034 .
_:906822 up:source unirule:MF_04034 .
_:906823 up:source unirule:MF_04034 .
_:906824 up:source unirule:MF_04034 .
_:906825 up:source unirule:MF_04034 .
_:906826 up:source unirule:MF_04034 .
_:906827 up:source unirule:MF_04034 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ;
up:classifiedWith GO:0019031 ,
GO:0019064 ,
GO:0020002 ,
GO:0055036 ,
keyword:1032 ,
keyword:1040 ,
keyword:1043 ,
keyword:1160 ,
keyword:1162 ,
keyword:1168 ,
keyword:1169 ,
keyword:261 ,
keyword:325 ,
keyword:472 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Envelope glycoprotein L' ;
up:shortName 'gL' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'gL' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'The heterodimer glycoprotein H-glycoprotein L is required for the fusion of viral and plasma membranes leading to virus entry into the host cell. Acts as a functional inhibitor of gH and maintains gH in an inhibited form. Upon binding to host integrins, gL dissociates from gH leading to activation of the viral fusion glycoproteins gB and gH.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with glycoprotein H (gH); this interaction is necessary for the correct processing and cell surface expression of gH. The heterodimer gH/gL seems to interact with gB trimers during fusion.' .
?annotation4 a up:Subcellular_Location_Annotation ;
rdfs:comment 'gL associates with the extravirion surface through its binding to gH. During virion morphogenesis, this protein probably accumulates in the host trans-Golgi where secondary envelopment occurs' .
?annotation4li5 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation4li6 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation4li7 up:cellularComponent .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with gH' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?sam14 up:classifiedWith keyword:732 .
?signal15 faldo:begin ?signalb16 ;
faldo:end ?signale17 .
?signalb16 faldo:position ?signalbp18 .
?signale17 faldo:position ?signalep19 .
?keyword20 up:range ?signal15 .
_:906828 a rdf:Statement ;
up:attribution _:906806 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:906829 a rdf:Statement ;
up:attribution _:906807 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:906830 a rdf:Statement ;
up:attribution _:906808 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:906831 a rdf:Statement ;
up:attribution _:906809 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:906832 a rdf:Statement ;
up:attribution _:906810 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:906833 a rdf:Statement ;
up:attribution _:906811 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1169 .
_:906834 a rdf:Statement ;
up:attribution _:906812 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1168 .
_:906835 a rdf:Statement ;
up:attribution _:906813 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:325 .
_:906836 a rdf:Statement ;
up:attribution _:906814 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1032 .
_:906837 a rdf:Statement ;
up:attribution _:906815 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1040 .
_:906838 a rdf:Statement ;
up:attribution _:906816 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:906839 a rdf:Statement ;
up:attribution _:906817 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:906840 a rdf:Statement ;
up:attribution _:906818 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:261 .
_:906841 a rdf:Statement ;
up:attribution _:906819 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1162 .
_:906842 a rdf:Statement ;
up:attribution _:906820 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:906843 a rdf:Statement ;
up:attribution _:906821 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1160 .
_:906844 a rdf:Statement ;
up:attribution _:906822 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0020002 .
_:906845 a rdf:Statement ;
up:attribution _:906823 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019031 .
_:906846 a rdf:Statement ;
up:attribution _:906824 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0055036 .
_:906847 a rdf:Statement ;
up:attribution _:906825 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019064 .
_:906848 a rdf:Statement ;
up:source unirule:MF_04034 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:906849 a rdf:Statement ;
up:attribution _:906826 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:906850 a rdf:Statement ;
up:attribution _:906827 ;
rdf:subject ?sam14 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04034
#Rule MF_04034 Created by:? on:2016-09-05 Modified by:Chantal Hulo on:2023-07-11
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04034 .
?thisOrganism rdfs:subClassOf+ taxon:10292 .
BIND(URI(CONCAT(STR(?this), '#MF_04034a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04034a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04034a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04034a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch25 faldo:location ?templateMotifSequenceMatchRegionP1018526 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1018528 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10185MF_0403421 .
?templateMotifSequenceMatchRegionP1018526 faldo:begin ?templateMotifSequenceMatchBeginP1018527 .
?templateMotifSequenceMatchBeginP1018527 faldo:position ?templateMotifSequenceMatchBeginPositionP1018522 ;
faldo:reference isoform:P10185-1 .
?templateMotifSequenceProfileAlignmentOperationP1018528 edam:has_input signature:MF_04034 ;
rdf:type edam:operation_0300 .
?targetMotifMatch29 faldo:location ?targetMotifMatchRegionMatch30 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0403432 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10185MF_0403423 .
?targetMotifMatchRegionMatch30 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0403431 .
?targetMotifMatchRegionMatchBeginMF_0403431 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0403424 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0403432 edam:has_input signature:MF_04034 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10185MF_0403421, 1, (STRLEN(?templateMotifCigarP10185MF_0403421) - STRLEN(REPLACE(?templateMotifCigarP10185MF_0403421, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionP1018522) + 1)), '}'), '')))), '[a-z]', '')) AS ?step133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10185MF_0403423, 1, (STRLEN(?targetMotifMatchCigarP10185MF_0403423) - STRLEN(REPLACE(?targetMotifMatchCigarP10185MF_0403423, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10185MF_0403423, 1, (STRLEN(?targetMotifMatchCigarP10185MF_0403423) - STRLEN(REPLACE(?targetMotifMatchCigarP10185MF_0403423, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), '')))), '[^-]', ''))) AS ?step234) .
BIND(((?step234 + ?targetMotifMatchRegionMatchBeginPositionMF_0403424) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10185MF_0403421, 1, (STRLEN(?templateMotifCigarP10185MF_0403421) - STRLEN(REPLACE(?templateMotifCigarP10185MF_0403421, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionP1018522) + 1)), '}'), '')))), '[a-z]', '')) AS ?step135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10185MF_0403423, 1, (STRLEN(?targetMotifMatchCigarP10185MF_0403423) - STRLEN(REPLACE(?targetMotifMatchCigarP10185MF_0403423, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10185MF_0403423, 1, (STRLEN(?targetMotifMatchCigarP10185MF_0403423) - STRLEN(REPLACE(?targetMotifMatchCigarP10185MF_0403423, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), '')))), '[^-]', ''))) AS ?step236) .
BIND(((?step236 + ?targetMotifMatchRegionMatchBeginPositionMF_0403424) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((BOUND(?thisPositionOn12) && BOUND(?thisPositionOn13))) .
BIND(URI(CONCAT(STR(?this), '#MF_04034a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:annotation ?samsignal38 ;
up:sequence ?thisSequence .
?samsignal38 up:range ?samsignalr39 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr39 faldo:begin ?samsignalb40 ;
faldo:end ?samsignale41 .
?samsignalb40 faldo:position ?samsignalbp42 ;
faldo:reference ?thisSequence .
?samsignale41 faldo:position ?samsignalep43 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam14) .
}
BIND(URI(CONCAT(STR(?this), '#MF_04034a20')) AS ?keyword20) .
}
"xsd:string |
