| http://purl.uniprot.org/unirules/MF_04041#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04041#construct-template-107 |
| http://purl.uniprot.org/unirules/MF_04041#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04041#construct-template-19 |
| http://purl.uniprot.org/unirules/MF_04041#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04041#construct-template-108 |
| http://purl.uniprot.org/unirules/MF_04041#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04041#construct-template-93 |
| http://purl.uniprot.org/unirules/MF_04041#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04041#construct-template-95 |
| http://purl.uniprot.org/unirules/MF_04041#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04041#construct-template-109 |
| http://purl.uniprot.org/unirules/MF_04041#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04041#construct-template-65 |
| http://purl.uniprot.org/unirules/MF_04041#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04041#construct-template-61 |
| http://purl.uniprot.org/unirules/MF_04041#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04041#construct-template-24 |
| http://purl.uniprot.org/unirules/MF_04041#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04041#construct-template-87 |
| http://purl.uniprot.org/unirules/MF_04041#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04041#construct-template-111 |
| http://purl.uniprot.org/unirules/MF_04041#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04041#construct-template-26 |
| http://purl.uniprot.org/unirules/MF_04041#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04041#construct-template-89 |
| http://purl.uniprot.org/unirules/MF_04041#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04041#construct-template-43 |
| http://purl.uniprot.org/unirules/MF_04041#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_04041#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_04041#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_04041#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_04041#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_04041#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:909173 up:source unirule:MF_04041 .
_:909174 up:source unirule:MF_04041 .
_:909175 up:source unirule:MF_04041 .
_:909176 up:source unirule:MF_04041 .
_:909177 up:source unirule:MF_04041 .
_:909178 up:source unirule:MF_04041 .
_:909179 up:source unirule:MF_04041 .
_:909180 up:source unirule:MF_04041 .
_:909181 up:source unirule:MF_04041 .
_:909182 up:source unirule:MF_04041 .
_:909183 up:source unirule:MF_04041 .
_:909184 up:source unirule:MF_04041 .
_:909185 up:source unirule:MF_04041 .
_:909186 up:source unirule:MF_04041 .
_:909187 up:source unirule:MF_04041 .
_:909188 up:source unirule:MF_04041 .
_:909189 up:source unirule:MF_04041 .
_:909190 up:source unirule:MF_04041 .
_:909191 up:source unirule:MF_04041 .
_:909192 up:source unirule:MF_04041 .
_:909193 up:source unirule:MF_04041 .
_:909194 up:source unirule:MF_04041 .
_:909195 up:source unirule:MF_04041 .
_:909196 up:source unirule:MF_04041 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation3 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0019033 ,
GO:0020002 ,
GO:0044178 ,
GO:0046760 ,
GO:0055036 ,
keyword:1032 ,
keyword:1040 ,
keyword:1043 ,
keyword:449 ,
keyword:472 ,
keyword:519 ,
keyword:564 ,
keyword:597 ,
keyword:920 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Cytoplasmic envelopment protein 3' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Plays an important role in the cytoplasmic envelopment of tegument proteins and capsids during the assembly and egress processes. Participates also in viral entry at the fusion step probably by regulating the core fusion machinery.' .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with cytoplasmic envelopment protein 2; this interaction is essential for the proper localization of each protein to the assembly complex and thus for the production of infectious virus.' .
?annotation3 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Virion membrane-associated tegument protein. Associates with host membrane lipids rafts. During virion morphogenesis, this protein probably accumulates in the endosomes and trans-Golgi where secondary envelopment occurs. It is probably transported to the cell surface from where it is endocytosed and directed to the trans-Golgi network (TGN)' .
?annotation3li4 up:cellularComponent .
?annotation3li5 up:cellularComponent .
?annotation3li6 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation3li7 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation8 a up:PTM_Annotation ;
rdfs:comment 'Myristoylation and palmitoylation (probably on one or more of the nearby cysteines at the N-terminus) enable membrane-binding and Golgi apparatus-specific targeting and are essential for efficient packaging.' .
?annotation9 a up:PTM_Annotation ;
rdfs:comment 'Phosphorylated. Phosphorylation does not seem to be required for recycling to the host Golgi apparatus. Packaging is selective for underphosphorylated forms.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the herpesviridae cytoplasmic envelopment protein 3 family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed; by host' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Lipidation_Annotation ;
rdfs:comment 'N-myristoyl glycine; by host' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
_:909197 a rdf:Statement ;
up:attribution _:909173 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:909198 a rdf:Statement ;
up:attribution _:909174 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:909199 a rdf:Statement ;
up:attribution _:909175 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:909200 a rdf:Statement ;
up:attribution _:909176 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:909201 a rdf:Statement ;
up:attribution _:909177 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:909202 a rdf:Statement ;
up:attribution _:909178 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:909203 a rdf:Statement ;
up:attribution _:909179 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:909204 a rdf:Statement ;
up:attribution _:909180 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1032 .
_:909205 a rdf:Statement ;
up:attribution _:909181 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1040 .
_:909206 a rdf:Statement ;
up:attribution _:909182 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:909207 a rdf:Statement ;
up:attribution _:909183 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:449 .
_:909208 a rdf:Statement ;
up:attribution _:909184 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:909209 a rdf:Statement ;
up:attribution _:909185 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:519 .
_:909210 a rdf:Statement ;
up:attribution _:909186 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:564 .
_:909211 a rdf:Statement ;
up:attribution _:909187 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:909212 a rdf:Statement ;
up:attribution _:909188 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:909213 a rdf:Statement ;
up:attribution _:909189 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:920 .
_:909214 a rdf:Statement ;
up:attribution _:909190 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044178 .
_:909215 a rdf:Statement ;
up:attribution _:909191 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0020002 .
_:909216 a rdf:Statement ;
up:attribution _:909192 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019033 .
_:909217 a rdf:Statement ;
up:attribution _:909193 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0055036 .
_:909218 a rdf:Statement ;
up:attribution _:909194 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046760 .
_:909219 a rdf:Statement ;
up:source unirule:MF_04041 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:909220 a rdf:Statement ;
up:attribution _:909195 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:909221 a rdf:Statement ;
up:source unirule:MF_04041 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:909222 a rdf:Statement ;
up:attribution _:909196 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04041
#Rule MF_04041 Created by:? on:2016-09-22 Modified by:Edouard de Castro on:2019-11-20
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04041 .
?thisOrganism rdfs:subClassOf+ taxon:10357 .
BIND(URI(CONCAT(STR(?this), '#MF_04041a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04041a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04041a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04041a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04041a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04041a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04041a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch27 faldo:location ?templateMotifSequenceMatchRegionP1320028 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1320030 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13200MF_0404123 .
?templateMotifSequenceMatchRegionP1320028 faldo:begin ?templateMotifSequenceMatchBeginP1320029 .
?templateMotifSequenceMatchBeginP1320029 faldo:position ?templateMotifSequenceMatchBeginPositionP1320024 ;
faldo:reference isoform:P13200-1 .
?templateMotifSequenceProfileAlignmentOperationP1320030 edam:has_input signature:MF_04041 ;
rdf:type edam:operation_0300 .
?targetMotifMatch31 faldo:location ?targetMotifMatchRegionMatch32 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0404134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13200MF_0404125 .
?targetMotifMatchRegionMatch32 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0404133 .
?targetMotifMatchRegionMatchBeginMF_0404133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0404126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0404134 edam:has_input signature:MF_04041 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13200MF_0404123, 1, (STRLEN(?templateMotifCigarP13200MF_0404123) - STRLEN(REPLACE(?templateMotifCigarP13200MF_0404123, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP1320024) + 1)), '}'), '')))), '[a-z]', '')) AS ?step135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13200MF_0404125, 1, (STRLEN(?targetMotifMatchCigarP13200MF_0404125) - STRLEN(REPLACE(?targetMotifMatchCigarP13200MF_0404125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13200MF_0404125, 1, (STRLEN(?targetMotifMatchCigarP13200MF_0404125) - STRLEN(REPLACE(?targetMotifMatchCigarP13200MF_0404125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), '')))), '[^-]', ''))) AS ?step236) .
BIND(((?step236 + ?targetMotifMatchRegionMatchBeginPositionMF_0404126) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_04041a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch42 faldo:location ?templateMotifSequenceMatchRegionP1320043 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1320045 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13200MF_0404138 .
?templateMotifSequenceMatchRegionP1320043 faldo:begin ?templateMotifSequenceMatchBeginP1320044 .
?templateMotifSequenceMatchBeginP1320044 faldo:position ?templateMotifSequenceMatchBeginPositionP1320039 ;
faldo:reference isoform:P13200-1 .
?templateMotifSequenceProfileAlignmentOperationP1320045 edam:has_input signature:MF_04041 ;
rdf:type edam:operation_0300 .
?targetMotifMatch46 faldo:location ?targetMotifMatchRegionMatch47 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0404149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13200MF_0404140 .
?targetMotifMatchRegionMatch47 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0404148 .
?targetMotifMatchRegionMatchBeginMF_0404148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0404141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0404149 edam:has_input signature:MF_04041 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13200MF_0404138, 1, (STRLEN(?templateMotifCigarP13200MF_0404138) - STRLEN(REPLACE(?templateMotifCigarP13200MF_0404138, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP1320039) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13200MF_0404140, 1, (STRLEN(?targetMotifMatchCigarP13200MF_0404140) - STRLEN(REPLACE(?targetMotifMatchCigarP13200MF_0404140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13200MF_0404140, 1, (STRLEN(?targetMotifMatchCigarP13200MF_0404140) - STRLEN(REPLACE(?targetMotifMatchCigarP13200MF_0404140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0404141) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_04041a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_04041 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_04041#construct |
