| http://purl.uniprot.org/unirules/MF_04042#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04042#construct-template-38 |
| http://purl.uniprot.org/unirules/MF_04042#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04042#construct-template-1 |
| http://purl.uniprot.org/unirules/MF_04042#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04042#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_04042#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04042#construct-template-90 |
| http://purl.uniprot.org/unirules/MF_04042#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04042#construct-template-102 |
| http://purl.uniprot.org/unirules/MF_04042#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04042#construct-template-97 |
| http://purl.uniprot.org/unirules/MF_04042#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04042#construct-template-99 |
| http://purl.uniprot.org/unirules/MF_04042#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04042#construct-template-92 |
| http://purl.uniprot.org/unirules/MF_04042#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04042#construct-template-100 |
| http://purl.uniprot.org/unirules/MF_04042#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04042#construct-template-96 |
| http://purl.uniprot.org/unirules/MF_04042#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04042#construct-template-94 |
| http://purl.uniprot.org/unirules/MF_04042#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04042#construct-template-109 |
| http://purl.uniprot.org/unirules/MF_04042#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04042#construct-template-107 |
| http://purl.uniprot.org/unirules/MF_04042#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04042#construct-template-105 |
| http://purl.uniprot.org/unirules/MF_04042#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_04042#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_04042#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_04042#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_04042#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_04042#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:909621 up:source unirule:MF_04042 .
_:909622 up:source unirule:MF_04042 .
_:909623 up:source unirule:MF_04042 .
_:909624 up:source unirule:MF_04042 .
_:909625 up:source unirule:MF_04042 .
_:909626 up:source unirule:MF_04042 .
_:909627 up:source unirule:MF_04042 .
_:909628 up:source unirule:MF_04042 .
_:909629 up:source unirule:MF_04042 .
_:909630 up:source unirule:MF_04042 .
_:909631 up:source unirule:MF_04042 .
_:909632 up:source unirule:MF_04042 .
_:909633 up:source unirule:MF_04042 .
_:909634 up:source unirule:MF_04042 .
_:909635 up:source unirule:MF_04042 .
_:909636 up:source unirule:MF_04042 .
_:909637 up:source unirule:MF_04042 .
_:909638 up:source unirule:MF_04042 .
_:909639 up:source unirule:MF_04042 .
_:909640 up:source unirule:MF_04042 .
_:909641 up:source unirule:MF_04042 .
_:909642 up:source unirule:MF_04042 .
_:909643 up:source unirule:MF_04042 .
_:909644 up:source unirule:MF_04042 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation3 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0019033 ,
GO:0020002 ,
GO:0044178 ,
GO:0046760 ,
GO:0055036 ,
keyword:1032 ,
keyword:1040 ,
keyword:1043 ,
keyword:449 ,
keyword:472 ,
keyword:519 ,
keyword:564 ,
keyword:597 ,
keyword:920 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Cytoplasmic envelopment protein 3' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Plays an important role in the cytoplasmic envelopment of tegument proteins and capsids during the assembly and egress processes. Participates also in viral entry at the fusion step probably by regulating the core fusion machinery.' .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with BGLF2; this interaction is essential for the proper localization of each protein to the assembly complex and thus for the production of infectious virus.' .
?annotation3 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Virion membrane-associated tegument protein. Associates with host membrane lipids rafts. During virion morphogenesis, this protein probably accumulates in the endosomes and trans-Golgi where secondary envelopment occurs. It is probably transported to the cell surface from where it is endocytosed and directed to the trans-Golgi network (TGN)' .
?annotation3li4 up:cellularComponent .
?annotation3li5 up:cellularComponent .
?annotation3li6 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation3li7 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation8 a up:PTM_Annotation ;
rdfs:comment 'Myristoylation and palmitoylation (probably on one or more of the nearby cysteines at the N-terminus) enable membrane-binding and Golgi apparatus-specific targeting and are essential for efficient packaging.' .
?annotation9 a up:PTM_Annotation ;
rdfs:comment 'Phosphorylated. Phosphorylation does not seem to be required for recycling to the host Golgi apparatus. Packaging is selective for underphosphorylated forms.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the herpesviridae cytoplasmic envelopment protein 3 family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed; by host' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Lipidation_Annotation ;
rdfs:comment 'N-myristoyl glycine; by host' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
_:909645 a rdf:Statement ;
up:attribution _:909621 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:909646 a rdf:Statement ;
up:attribution _:909622 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:909647 a rdf:Statement ;
up:attribution _:909623 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:909648 a rdf:Statement ;
up:attribution _:909624 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:909649 a rdf:Statement ;
up:attribution _:909625 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:909650 a rdf:Statement ;
up:attribution _:909626 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:909651 a rdf:Statement ;
up:attribution _:909627 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:909652 a rdf:Statement ;
up:attribution _:909628 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1032 .
_:909653 a rdf:Statement ;
up:attribution _:909629 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1040 .
_:909654 a rdf:Statement ;
up:attribution _:909630 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:909655 a rdf:Statement ;
up:attribution _:909631 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:449 .
_:909656 a rdf:Statement ;
up:attribution _:909632 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:909657 a rdf:Statement ;
up:attribution _:909633 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:519 .
_:909658 a rdf:Statement ;
up:attribution _:909634 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:564 .
_:909659 a rdf:Statement ;
up:attribution _:909635 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:909660 a rdf:Statement ;
up:attribution _:909636 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:909661 a rdf:Statement ;
up:attribution _:909637 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:920 .
_:909662 a rdf:Statement ;
up:attribution _:909638 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044178 .
_:909663 a rdf:Statement ;
up:attribution _:909639 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0020002 .
_:909664 a rdf:Statement ;
up:attribution _:909640 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019033 .
_:909665 a rdf:Statement ;
up:attribution _:909641 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0055036 .
_:909666 a rdf:Statement ;
up:attribution _:909642 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046760 .
_:909667 a rdf:Statement ;
up:source unirule:MF_04042 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:909668 a rdf:Statement ;
up:attribution _:909643 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:909669 a rdf:Statement ;
up:source unirule:MF_04042 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:909670 a rdf:Statement ;
up:attribution _:909644 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04042
#Rule MF_04042 Created by:? on:2016-09-22 Modified by:Chantal Hulo on:2022-10-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04042 .
?thisOrganism rdfs:subClassOf+ taxon:10374 .
BIND(URI(CONCAT(STR(?this), '#MF_04042a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04042a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04042a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04042a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04042a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04042a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04042a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch27 faldo:location ?templateMotifSequenceMatchRegionP0CK5128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0CK5130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0CK51MF_0404223 .
?templateMotifSequenceMatchRegionP0CK5128 faldo:begin ?templateMotifSequenceMatchBeginP0CK5129 .
?templateMotifSequenceMatchBeginP0CK5129 faldo:position ?templateMotifSequenceMatchBeginPositionP0CK5124 ;
faldo:reference isoform:P0CK51-1 .
?templateMotifSequenceProfileAlignmentOperationP0CK5130 edam:has_input signature:MF_04042 ;
rdf:type edam:operation_0300 .
?targetMotifMatch31 faldo:location ?targetMotifMatchRegionMatch32 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0404234 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0CK51MF_0404225 .
?targetMotifMatchRegionMatch32 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0404233 .
?targetMotifMatchRegionMatchBeginMF_0404233 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0404226 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0404234 edam:has_input signature:MF_04042 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0CK51MF_0404223, 1, (STRLEN(?templateMotifCigarP0CK51MF_0404223) - STRLEN(REPLACE(?templateMotifCigarP0CK51MF_0404223, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP0CK5124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0CK51MF_0404225, 1, (STRLEN(?targetMotifMatchCigarP0CK51MF_0404225) - STRLEN(REPLACE(?targetMotifMatchCigarP0CK51MF_0404225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0CK51MF_0404225, 1, (STRLEN(?targetMotifMatchCigarP0CK51MF_0404225) - STRLEN(REPLACE(?targetMotifMatchCigarP0CK51MF_0404225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), '')))), '[^-]', ''))) AS ?step236) .
BIND(((?step236 + ?targetMotifMatchRegionMatchBeginPositionMF_0404226) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_04042a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch42 faldo:location ?templateMotifSequenceMatchRegionP0CK5143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0CK5145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0CK51MF_0404238 .
?templateMotifSequenceMatchRegionP0CK5143 faldo:begin ?templateMotifSequenceMatchBeginP0CK5144 .
?templateMotifSequenceMatchBeginP0CK5144 faldo:position ?templateMotifSequenceMatchBeginPositionP0CK5139 ;
faldo:reference isoform:P0CK51-1 .
?templateMotifSequenceProfileAlignmentOperationP0CK5145 edam:has_input signature:MF_04042 ;
rdf:type edam:operation_0300 .
?targetMotifMatch46 faldo:location ?targetMotifMatchRegionMatch47 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0404249 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0CK51MF_0404240 .
?targetMotifMatchRegionMatch47 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0404248 .
?targetMotifMatchRegionMatchBeginMF_0404248 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0404241 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0404249 edam:has_input signature:MF_04042 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0CK51MF_0404238, 1, (STRLEN(?templateMotifCigarP0CK51MF_0404238) - STRLEN(REPLACE(?templateMotifCigarP0CK51MF_0404238, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP0CK5139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0CK51MF_0404240, 1, (STRLEN(?targetMotifMatchCigarP0CK51MF_0404240) - STRLEN(REPLACE(?targetMotifMatchCigarP0CK51MF_0404240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0CK51MF_0404240, 1, (STRLEN(?targetMotifMatchCigarP0CK51MF_0404240) - STRLEN(REPLACE(?targetMotifMatchCigarP0CK51MF_0404240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0404241) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_04042a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_04042 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_04042#construct |
