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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_04064#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04064#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_04064#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04064#construct-template-5 |
| http://purl.uniprot.org/unirules/MF_04064#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04064#construct-template-107 |
| http://purl.uniprot.org/unirules/MF_04064#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04064#construct-template-98 |
| http://purl.uniprot.org/unirules/MF_04064#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04064#construct-template-75 |
| http://purl.uniprot.org/unirules/MF_04064#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04064#construct-template-96 |
| http://purl.uniprot.org/unirules/MF_04064#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04064#construct-template-97 |
| http://purl.uniprot.org/unirules/MF_04064#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04064#construct-template-94 |
| http://purl.uniprot.org/unirules/MF_04064#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04064#construct-template-99 |
| http://purl.uniprot.org/unirules/MF_04064#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04064#construct-template-92 |
| http://purl.uniprot.org/unirules/MF_04064#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04064#construct-template-90 |
| http://purl.uniprot.org/unirules/MF_04064#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_04064#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_04064#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_04064#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_04064#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_04064#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:922420 up:source unirule:MF_04064 . _:922421 up:source unirule:MF_04064 . _:922422 up:source unirule:MF_04064 . _:922423 up:source unirule:MF_04064 . _:922424 up:source unirule:MF_04064 . _:922425 up:source unirule:MF_04064 . _:922426 up:source unirule:MF_04064 . _:922427 up:source unirule:MF_04064 . _:922428 up:source unirule:MF_04064 . _:922429 up:source unirule:MF_04064 . _:922430 up:source unirule:MF_04064 . _:922431 up:source unirule:MF_04064 . _:922432 up:source unirule:MF_04064 . _:922433 up:source unirule:MF_04064 . _:922434 up:source unirule:MF_04064 . _:922435 up:source unirule:MF_04064 . _:922436 up:source unirule:MF_04064 . _:922437 up:source unirule:MF_04064 . _:922438 up:source unirule:MF_04064 . _:922439 up:source unirule:MF_04064 . _:922440 up:source unirule:MF_04064 . _:922441 up:source unirule:MF_04064 . _:922442 up:source unirule:MF_04064 . _:922443 up:source unirule:MF_04064 . _:922444 up:source unirule:MF_04064 . _:922445 up:source unirule:MF_04064 . ?this up:annotation ?annotation2 ; up:classifiedWith GO:0016020 , GO:0044164 , keyword:1035 , keyword:1048 ; up:recommendedName ?name0 . ?name0 up:fullName 'Protein PB1-F2' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'PB1' . ?annotation2 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the influenza viruses PB1-F2 family.' . ?case3 up:classifiedWith GO:0032688 , GO:0039545 , GO:0042025 , GO:0044192 , GO:0052150 , keyword:1043 , keyword:1045 , keyword:1046 , keyword:1090 , keyword:1097 , keyword:1113 , keyword:1119 , keyword:472 , keyword:53 , keyword:899 , keyword:945 . ?pfs5 up:annotation ?annotation6 . ?annotation6 faldo:begin ?pfsb7 ; faldo:end ?pfse8 ; rdf:type up:Region_Annotation ; rdfs:comment 'Mitochondrial targeting sequence' . ?pfsb7 faldo:position ?thisPositionOn9 ; rdf:type faldo:ExactPosition . ?pfse8 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; rdf:type up:Site_Annotation ; rdfs:comment 'High pathogenicity' . ?pfsb13 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; rdf:type up:Site_Annotation ; rdfs:comment 'Low pathogenicity' . ?pfsb19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . _:922446 a rdf:Statement ; up:attribution _:922420 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:922447 a rdf:Statement ; up:attribution _:922421 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:922448 a rdf:Statement ; up:attribution _:922422 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:922449 a rdf:Statement ; up:attribution _:922423 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1035 . _:922450 a rdf:Statement ; up:attribution _:922424 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1048 . _:922451 a rdf:Statement ; up:attribution _:922425 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0044164 . _:922452 a rdf:Statement ; up:attribution _:922426 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016020 . _:922453 a rdf:Statement ; up:attribution _:922427 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:53 . _:922454 a rdf:Statement ; up:attribution _:922428 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1043 . _:922455 a rdf:Statement ; up:attribution _:922429 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1045 . _:922456 a rdf:Statement ; up:attribution _:922430 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1046 . _:922457 a rdf:Statement ; up:attribution _:922431 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:945 . _:922458 a rdf:Statement ; up:attribution _:922432 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1090 . _:922459 a rdf:Statement ; up:attribution _:922433 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1097 . _:922460 a rdf:Statement ; up:attribution _:922434 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1113 . _:922461 a rdf:Statement ; up:attribution _:922435 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:922462 a rdf:Statement ; up:attribution _:922436 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1119 . _:922463 a rdf:Statement ; up:attribution _:922437 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:899 . _:922464 a rdf:Statement ; up:attribution _:922438 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object GO:0044192 . _:922465 a rdf:Statement ; up:attribution _:922439 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object GO:0042025 . _:922466 a rdf:Statement ; up:attribution _:922440 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object GO:0052150 . _:922467 a rdf:Statement ; up:attribution _:922441 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object GO:0032688 . _:922468 a rdf:Statement ; up:attribution _:922442 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object GO:0039545 . _:922469 a rdf:Statement ; up:source unirule:MF_04064 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:922470 a rdf:Statement ; up:attribution _:922443 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:922471 a rdf:Statement ; up:source unirule:MF_04064 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:922472 a rdf:Statement ; up:attribution _:922444 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:922473 a rdf:Statement ; up:source unirule:MF_04064 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:922474 a rdf:Statement ; up:attribution _:922445 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04064 #Rule MF_04064 Created by:? on:2017-03-31 Modified by:Catherine Rivoire on:2024-03-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04064 . ?thisOrganism rdfs:subClassOf+ taxon:11308 . BIND(URI(CONCAT(STR(?this), '#MF_04064a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04064a2')) AS ?annotation2) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch27 faldo:location ?templateMotifSequenceMatchRegionP0C0U128 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C0U130 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0C0U1MF_0406423 . ?templateMotifSequenceMatchRegionP0C0U128 faldo:begin ?templateMotifSequenceMatchBeginP0C0U129 . ?templateMotifSequenceMatchBeginP0C0U129 faldo:position ?templateMotifSequenceMatchBeginPositionP0C0U124 ; faldo:reference isoform:P0C0U1-1 . ?templateMotifSequenceProfileAlignmentOperationP0C0U130 edam:has_input signature:MF_04064 ; rdf:type edam:operation_0300 . ?targetMotifMatch31 faldo:location ?targetMotifMatchRegionMatch32 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0406434 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0C0U1MF_0406425 . ?targetMotifMatchRegionMatch32 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0406433 . ?targetMotifMatchRegionMatchBeginMF_0406433 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0406426 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0406434 edam:has_input signature:MF_04064 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagSignal) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0U1MF_0406423, 1, (STRLEN(?templateMotifCigarP0C0U1MF_0406423) - STRLEN(REPLACE(?templateMotifCigarP0C0U1MF_0406423, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP0C0U124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step135) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0U1MF_0406425, 1, (STRLEN(?targetMotifMatchCigarP0C0U1MF_0406425) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0U1MF_0406425, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0U1MF_0406425, 1, (STRLEN(?targetMotifMatchCigarP0C0U1MF_0406425) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0U1MF_0406425, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), '')))), '[^-]', ''))) AS ?step236) . BIND(((?step236 + ?targetMotifMatchRegionMatchBeginPositionMF_0406426) - 1) AS ?thisPositionOn9) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0U1MF_0406423, 1, (STRLEN(?templateMotifCigarP0C0U1MF_0406423) - STRLEN(REPLACE(?templateMotifCigarP0C0U1MF_0406423, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionP0C0U124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0U1MF_0406425, 1, (STRLEN(?targetMotifMatchCigarP0C0U1MF_0406425) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0U1MF_0406425, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0U1MF_0406425, 1, (STRLEN(?targetMotifMatchCigarP0C0U1MF_0406425) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0U1MF_0406425, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) . BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0406426) - 1) AS ?thisPositionOn10) . BIND(?this AS ?pfs1t39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn9))) AS ?pfsb7) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfse8) . FILTER (REGEX('[KR][ARNDCQEGHILKMFPSTWYVBZJUOX]*[EG]', SUBSTR(?thisSequenceValue, ?thisPositionOn9, (?thisPositionOn10 - ?thisPositionOn9)))) . BIND(URI(CONCAT(STR(?this), '#MF_04064a6')) AS ?annotation6) . BIND(?this AS ?pfs5) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionP0C0U145 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C0U147 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0C0U1MF_0406440 . ?templateMotifSequenceMatchRegionP0C0U145 faldo:begin ?templateMotifSequenceMatchBeginP0C0U146 . ?templateMotifSequenceMatchBeginP0C0U146 faldo:position ?templateMotifSequenceMatchBeginPositionP0C0U141 ; faldo:reference isoform:P0C0U1-1 . ?templateMotifSequenceProfileAlignmentOperationP0C0U147 edam:has_input signature:MF_04064 ; rdf:type edam:operation_0300 . ?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0406451 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0C0U1MF_0406442 . ?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0406450 . ?targetMotifMatchRegionMatchBeginMF_0406450 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0406443 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0406451 edam:has_input signature:MF_04064 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0U1MF_0406440, 1, (STRLEN(?templateMotifCigarP0C0U1MF_0406440) - STRLEN(REPLACE(?templateMotifCigarP0C0U1MF_0406440, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0C0U141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0U1MF_0406442, 1, (STRLEN(?targetMotifMatchCigarP0C0U1MF_0406442) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0U1MF_0406442, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0U1MF_0406442, 1, (STRLEN(?targetMotifMatchCigarP0C0U1MF_0406442) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0U1MF_0406442, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) . BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0406443) - 1) AS ?thisPositionOn15) . BIND(?thisPositionOn15 AS ?thisPositionOn16) . BIND(?this AS ?pfs2t54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_04064a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch59 faldo:location ?templateMotifSequenceMatchRegionP0C0U160 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C0U162 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0C0U1MF_0406455 . ?templateMotifSequenceMatchRegionP0C0U160 faldo:begin ?templateMotifSequenceMatchBeginP0C0U161 . ?templateMotifSequenceMatchBeginP0C0U161 faldo:position ?templateMotifSequenceMatchBeginPositionP0C0U156 ; faldo:reference isoform:P0C0U1-1 . ?templateMotifSequenceProfileAlignmentOperationP0C0U162 edam:has_input signature:MF_04064 ; rdf:type edam:operation_0300 . ?targetMotifMatch63 faldo:location ?targetMotifMatchRegionMatch64 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0406466 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0C0U1MF_0406457 . ?targetMotifMatchRegionMatch64 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0406465 . ?targetMotifMatchRegionMatchBeginMF_0406465 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0406458 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0406466 edam:has_input signature:MF_04064 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C0U1MF_0406455, 1, (STRLEN(?templateMotifCigarP0C0U1MF_0406455) - STRLEN(REPLACE(?templateMotifCigarP0C0U1MF_0406455, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0C0U156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C0U1MF_0406457, 1, (STRLEN(?targetMotifMatchCigarP0C0U1MF_0406457) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0U1MF_0406457, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C0U1MF_0406457, 1, (STRLEN(?targetMotifMatchCigarP0C0U1MF_0406457) - STRLEN(REPLACE(?targetMotifMatchCigarP0C0U1MF_0406457, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) . BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0406458) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs2t69) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_04064a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag70) . } BIND(IF(BOUND(?tagSignal), ?caseWithTag70, ?UNBOUND_VARIABLE) AS ?case3) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag71) . } BIND(IF(BOUND(?tagSignal), ?caseWithTag71, ?UNBOUND_VARIABLE) AS ?case4) . } "xsd:string |
| http://purl.uniprot.org/unirules/MF_04064 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_04064#construct |