| http://purl.uniprot.org/unirules/MF_04067#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:923476 up:source unirule:MF_04067 .
_:923477 up:source unirule:MF_04067 .
_:923478 up:source unirule:MF_04067 .
_:923479 up:source unirule:MF_04067 .
_:923480 up:source unirule:MF_04067 .
_:923481 up:source unirule:MF_04067 .
_:923482 up:source unirule:MF_04067 .
_:923483 up:source unirule:MF_04067 .
_:923484 up:source unirule:MF_04067 .
_:923485 up:source unirule:MF_04067 .
_:923486 up:source unirule:MF_04067 .
_:923487 up:source unirule:MF_04067 .
_:923488 up:source unirule:MF_04067 .
_:923489 up:source unirule:MF_04067 .
_:923490 up:source unirule:MF_04067 .
_:923491 up:source unirule:MF_04067 .
_:923492 up:source unirule:MF_04067 .
_:923493 up:source unirule:MF_04067 .
_:923494 up:source unirule:MF_04067 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation8 ;
up:classifiedWith GO:0006405 ,
GO:0039675 ,
GO:0042025 ,
GO:0044423 ,
keyword:1048 ,
keyword:813 ,
keyword:945 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Nuclear export protein' ;
up:shortName 'NEP' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Non-structural protein 2' ;
up:shortName 'NS2' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'NS' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Mediates the nuclear export of encapsidated genomic RNAs (ribonucleoproteins, RNPs). Acts as an adapter between viral RNPs complexes and the nuclear export machinery of the cell. Possesses no intrinsic RNA-binding activity, but includes a C-terminal M1-binding domain. This domain is believed to allow recognition of RNPs bound to the protein M1. Since protein M1 is not available in large quantities before late stages of infection, such an indirect recognition mechanism probably ensures that genomic RNPs are not exported from the host nucleus until sufficient quantities of viral mRNA and progeny genomic RNA have been synthesized. Furthermore, the RNPs enter the host cytoplasm only when associated with the M1 protein that is necessary to guide them to the plasma membrane. May down-regulate viral RNA synthesis when overproduced.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with protein M1. May interact with host nucleoporin RAB/HRB and exportin XPO1/CRM1.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation5li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the influenza viruses NEP family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Nuclear export signal' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Nuclear export signal' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Nuclear export signal' .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Nuclear export signal' .
?pfsb29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
_:923495 a rdf:Statement ;
up:attribution _:923476 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:923496 a rdf:Statement ;
up:attribution _:923477 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:923497 a rdf:Statement ;
up:attribution _:923478 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:923498 a rdf:Statement ;
up:attribution _:923479 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:923499 a rdf:Statement ;
up:attribution _:923480 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:923500 a rdf:Statement ;
up:attribution _:923481 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:923501 a rdf:Statement ;
up:attribution _:923482 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:923502 a rdf:Statement ;
up:attribution _:923483 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1048 .
_:923503 a rdf:Statement ;
up:attribution _:923484 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:923504 a rdf:Statement ;
up:attribution _:923485 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:923505 a rdf:Statement ;
up:attribution _:923486 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:923506 a rdf:Statement ;
up:attribution _:923487 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042025 .
_:923507 a rdf:Statement ;
up:attribution _:923488 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044423 .
_:923508 a rdf:Statement ;
up:attribution _:923489 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039675 .
_:923509 a rdf:Statement ;
up:attribution _:923490 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006405 .
_:923510 a rdf:Statement ;
up:source unirule:MF_04067 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:923511 a rdf:Statement ;
up:attribution _:923491 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:923512 a rdf:Statement ;
up:source unirule:MF_04067 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:923513 a rdf:Statement ;
up:attribution _:923492 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:923514 a rdf:Statement ;
up:source unirule:MF_04067 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:923515 a rdf:Statement ;
up:attribution _:923493 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:923516 a rdf:Statement ;
up:source unirule:MF_04067 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:923517 a rdf:Statement ;
up:attribution _:923494 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04067
#Rule MF_04067 Created by:? on:2017-04-10 Modified by:Catherine Rivoire on:2021-06-04
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04067 .
?thisOrganism rdfs:subClassOf+ taxon:11308 .
BIND(URI(CONCAT(STR(?this), '#MF_04067a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04067a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04067a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04067a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04067a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04067a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch37 faldo:location ?templateMotifSequenceMatchRegionQ0164038 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0164040 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ01640MF_0406733 .
?templateMotifSequenceMatchRegionQ0164038 faldo:begin ?templateMotifSequenceMatchBeginQ0164039 .
?templateMotifSequenceMatchBeginQ0164039 faldo:position ?templateMotifSequenceMatchBeginPositionQ0164034 ;
faldo:reference isoform:Q01640-1 .
?templateMotifSequenceProfileAlignmentOperationQ0164040 edam:has_input signature:MF_04067 ;
rdf:type edam:operation_0300 .
?targetMotifMatch41 faldo:location ?targetMotifMatchRegionMatch42 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0406744 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ01640MF_0406735 .
?targetMotifMatchRegionMatch42 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0406743 .
?targetMotifMatchRegionMatchBeginMF_0406743 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0406736 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0406744 edam:has_input signature:MF_04067 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:197913 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ01640MF_0406733, 1, (STRLEN(?templateMotifCigarQ01640MF_0406733) - STRLEN(REPLACE(?templateMotifCigarQ01640MF_0406733, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionQ0164034) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ01640MF_0406735, 1, (STRLEN(?targetMotifMatchCigarQ01640MF_0406735) - STRLEN(REPLACE(?targetMotifMatchCigarQ01640MF_0406735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ01640MF_0406735, 1, (STRLEN(?targetMotifMatchCigarQ01640MF_0406735) - STRLEN(REPLACE(?targetMotifMatchCigarQ01640MF_0406735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0406736) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ01640MF_0406733, 1, (STRLEN(?templateMotifCigarQ01640MF_0406733) - STRLEN(REPLACE(?templateMotifCigarQ01640MF_0406733, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionQ0164034) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ01640MF_0406735, 1, (STRLEN(?targetMotifMatchCigarQ01640MF_0406735) - STRLEN(REPLACE(?targetMotifMatchCigarQ01640MF_0406735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ01640MF_0406735, 1, (STRLEN(?targetMotifMatchCigarQ01640MF_0406735) - STRLEN(REPLACE(?targetMotifMatchCigarQ01640MF_0406735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0406736) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((BOUND(?thisPositionOn13) && BOUND(?thisPositionOn14))) .
BIND(URI(CONCAT(STR(?this), '#MF_04067a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch54 faldo:location ?templateMotifSequenceMatchRegionQ0164055 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0164057 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ01640MF_0406750 .
?templateMotifSequenceMatchRegionQ0164055 faldo:begin ?templateMotifSequenceMatchBeginQ0164056 .
?templateMotifSequenceMatchBeginQ0164056 faldo:position ?templateMotifSequenceMatchBeginPositionQ0164051 ;
faldo:reference isoform:Q01640-1 .
?templateMotifSequenceProfileAlignmentOperationQ0164057 edam:has_input signature:MF_04067 ;
rdf:type edam:operation_0300 .
?targetMotifMatch58 faldo:location ?targetMotifMatchRegionMatch59 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0406761 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ01640MF_0406752 .
?targetMotifMatchRegionMatch59 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0406760 .
?targetMotifMatchRegionMatchBeginMF_0406760 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0406753 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0406761 edam:has_input signature:MF_04067 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:197913 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ01640MF_0406750, 1, (STRLEN(?templateMotifCigarQ01640MF_0406750) - STRLEN(REPLACE(?templateMotifCigarQ01640MF_0406750, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionQ0164051) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ01640MF_0406752, 1, (STRLEN(?targetMotifMatchCigarQ01640MF_0406752) - STRLEN(REPLACE(?targetMotifMatchCigarQ01640MF_0406752, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ01640MF_0406752, 1, (STRLEN(?targetMotifMatchCigarQ01640MF_0406752) - STRLEN(REPLACE(?targetMotifMatchCigarQ01640MF_0406752, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0406753) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ01640MF_0406750, 1, (STRLEN(?templateMotifCigarQ01640MF_0406750) - STRLEN(REPLACE(?templateMotifCigarQ01640MF_0406750, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionQ0164051) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ01640MF_0406752, 1, (STRLEN(?targetMotifMatchCigarQ01640MF_0406752) - STRLEN(REPLACE(?targetMotifMatchCigarQ01640MF_0406752, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ01640MF_0406752, 1, (STRLEN(?targetMotifMatchCigarQ01640MF_0406752) - STRLEN(REPLACE(?targetMotifMatchCigarQ01640MF_0406752, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0406753) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((BOUND(?thisPositionOn19) && BOUND(?thisPositionOn20))) .
BIND(URI(CONCAT(STR(?this), '#MF_04067a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP0350873 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0350875 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03508MF_0406768 .
?templateMotifSequenceMatchRegionP0350873 faldo:begin ?templateMotifSequenceMatchBeginP0350874 .
?templateMotifSequenceMatchBeginP0350874 faldo:position ?templateMotifSequenceMatchBeginPositionP0350869 ;
faldo:reference isoform:P03508-1 .
?templateMotifSequenceProfileAlignmentOperationP0350875 edam:has_input signature:MF_04067 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0406779 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03508MF_0406770 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0406778 .
?targetMotifMatchRegionMatchBeginMF_0406778 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0406771 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0406779 edam:has_input signature:MF_04067 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon67 {taxon:197911 taxon:197912}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon67 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03508MF_0406768, 1, (STRLEN(?templateMotifCigarP03508MF_0406768) - STRLEN(REPLACE(?templateMotifCigarP03508MF_0406768, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP0350869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03508MF_0406770, 1, (STRLEN(?targetMotifMatchCigarP03508MF_0406770) - STRLEN(REPLACE(?targetMotifMatchCigarP03508MF_0406770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03508MF_0406770, 1, (STRLEN(?targetMotifMatchCigarP03508MF_0406770) - STRLEN(REPLACE(?targetMotifMatchCigarP03508MF_0406770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0406771) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03508MF_0406768, 1, (STRLEN(?templateMotifCigarP03508MF_0406768) - STRLEN(REPLACE(?templateMotifCigarP03508MF_0406768, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP0350869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03508MF_0406770, 1, (STRLEN(?targetMotifMatchCigarP03508MF_0406770) - STRLEN(REPLACE(?targetMotifMatchCigarP03508MF_0406770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03508MF_0406770, 1, (STRLEN(?targetMotifMatchCigarP03508MF_0406770) - STRLEN(REPLACE(?targetMotifMatchCigarP03508MF_0406770, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0406771) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs2t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((BOUND(?thisPositionOn25) && BOUND(?thisPositionOn26))) .
BIND(URI(CONCAT(STR(?this), '#MF_04067a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionP0350891 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0350893 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03508MF_0406786 .
?templateMotifSequenceMatchRegionP0350891 faldo:begin ?templateMotifSequenceMatchBeginP0350892 .
?templateMotifSequenceMatchBeginP0350892 faldo:position ?templateMotifSequenceMatchBeginPositionP0350887 ;
faldo:reference isoform:P03508-1 .
?templateMotifSequenceProfileAlignmentOperationP0350893 edam:has_input signature:MF_04067 ;
rdf:type edam:operation_0300 .
?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0406797 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03508MF_0406788 .
?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0406796 .
?targetMotifMatchRegionMatchBeginMF_0406796 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0406789 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0406797 edam:has_input signature:MF_04067 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon85 {taxon:197911 taxon:197912}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon85 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03508MF_0406786, 1, (STRLEN(?templateMotifCigarP03508MF_0406786) - STRLEN(REPLACE(?templateMotifCigarP03508MF_0406786, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP0350887) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03508MF_0406788, 1, (STRLEN(?targetMotifMatchCigarP03508MF_0406788) - STRLEN(REPLACE(?targetMotifMatchCigarP03508MF_0406788, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03508MF_0406788, 1, (STRLEN(?targetMotifMatchCigarP03508MF_0406788) - STRLEN(REPLACE(?targetMotifMatchCigarP03508MF_0406788, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0406789) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03508MF_0406786, 1, (STRLEN(?templateMotifCigarP03508MF_0406786) - STRLEN(REPLACE(?templateMotifCigarP03508MF_0406786, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP0350887) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03508MF_0406788, 1, (STRLEN(?targetMotifMatchCigarP03508MF_0406788) - STRLEN(REPLACE(?targetMotifMatchCigarP03508MF_0406788, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03508MF_0406788, 1, (STRLEN(?targetMotifMatchCigarP03508MF_0406788) - STRLEN(REPLACE(?targetMotifMatchCigarP03508MF_0406788, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0406789) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs2t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((BOUND(?thisPositionOn31) && BOUND(?thisPositionOn32))) .
BIND(URI(CONCAT(STR(?this), '#MF_04067a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
}
"xsd:string |
