| http://purl.uniprot.org/unirules/MF_04094#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:947391 up:source unirule:MF_04094 .
_:947392 up:source unirule:MF_04094 .
_:947393 up:source unirule:MF_04094 .
_:947394 up:source unirule:MF_04094 .
_:947395 up:source unirule:MF_04094 .
_:947396 up:source unirule:MF_04094 .
_:947397 up:source unirule:MF_04094 .
_:947398 up:source unirule:MF_04094 .
_:947399 up:source unirule:MF_04094 .
_:947400 up:source unirule:MF_04094 .
_:947401 up:source unirule:MF_04094 .
_:947402 up:source unirule:MF_04094 .
_:947403 up:source unirule:MF_04094 .
_:947404 up:source unirule:MF_04094 .
_:947405 up:source unirule:MF_04094 .
_:947406 up:source unirule:MF_04094 .
_:947407 up:source unirule:MF_04094 .
_:947408 up:source unirule:MF_04094 .
_:947409 up:source unirule:MF_04094 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0003723 ,
GO:0006417 ,
keyword:1035 ,
keyword:175 ,
keyword:694 ,
keyword:810 ,
keyword:945 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Non-structural protein 3' ;
up:shortName 'NSP3' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'NCVP4' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Non-structural RNA-binding protein 34' ;
up:shortName 'NS34' ;
rdf:type up:Structured_Name .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Plays an important role in stimulating the translation of viral mRNAs. These mRNAs are capped but not polyadenylated, instead terminating in a conserved sequence 'GACC' at the 3' that is recognized by NSP3, which competes with host PABPC1 for EIF4G1 binding. The interaction between NSP3 and host EIF4G1 stabilizes the EIF4E-EIF4G1 interaction, thereby facilitating the initiation of capped mRNA translation." .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer. Interacts (via the coiled-coil region) with host ZC3H7B (via LD motif). Interacts with host EIF4G1.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the rotavirus A NSP3 protein family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'RNA-binding' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Dimerization' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with host ZC3H7B' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with host EIF4G1' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Coiled_Coil_Annotation .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
_:947410 a rdf:Statement ;
up:attribution _:947391 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:947411 a rdf:Statement ;
up:attribution _:947392 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:947412 a rdf:Statement ;
up:attribution _:947393 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:947413 a rdf:Statement ;
up:attribution _:947394 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:947414 a rdf:Statement ;
up:attribution _:947395 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:947415 a rdf:Statement ;
up:attribution _:947396 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:947416 a rdf:Statement ;
up:attribution _:947397 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:947417 a rdf:Statement ;
up:attribution _:947398 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
_:947418 a rdf:Statement ;
up:attribution _:947399 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1035 .
_:947419 a rdf:Statement ;
up:attribution _:947400 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:947420 a rdf:Statement ;
up:attribution _:947401 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:947421 a rdf:Statement ;
up:attribution _:947402 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:810 .
_:947422 a rdf:Statement ;
up:attribution _:947403 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:947423 a rdf:Statement ;
up:attribution _:947404 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006417 .
_:947424 a rdf:Statement ;
up:source unirule:MF_04094 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:947425 a rdf:Statement ;
up:attribution _:947405 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:947426 a rdf:Statement ;
up:source unirule:MF_04094 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:947427 a rdf:Statement ;
up:attribution _:947406 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:947428 a rdf:Statement ;
up:source unirule:MF_04094 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:947429 a rdf:Statement ;
up:attribution _:947407 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:947430 a rdf:Statement ;
up:source unirule:MF_04094 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:947431 a rdf:Statement ;
up:attribution _:947408 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:947432 a rdf:Statement ;
up:source unirule:MF_04094 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:947433 a rdf:Statement ;
up:attribution _:947409 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04094
#Rule MF_04094 Created by:? on:2018-03-09 Modified by:Edouard de Castro on:2019-11-20
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04094 .
?thisOrganism rdfs:subClassOf+ taxon:10912 .
BIND(URI(CONCAT(STR(?this), '#MF_04094a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04094a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04094a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_04094a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04094a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04094a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04094a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch42 faldo:location ?templateMotifSequenceMatchRegionQ8UZL843 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8UZL845 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8UZL8MF_0409438 .
?templateMotifSequenceMatchRegionQ8UZL843 faldo:begin ?templateMotifSequenceMatchBeginQ8UZL844 .
?templateMotifSequenceMatchBeginQ8UZL844 faldo:position ?templateMotifSequenceMatchBeginPositionQ8UZL839 ;
faldo:reference isoform:Q8UZL8-1 .
?templateMotifSequenceProfileAlignmentOperationQ8UZL845 edam:has_input signature:MF_04094 ;
rdf:type edam:operation_0300 .
?targetMotifMatch46 faldo:location ?targetMotifMatchRegionMatch47 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0409449 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8UZL8MF_0409440 .
?targetMotifMatchRegionMatch47 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0409448 .
?targetMotifMatchRegionMatchBeginMF_0409448 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0409441 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0409449 edam:has_input signature:MF_04094 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8UZL8MF_0409438, 1, (STRLEN(?templateMotifCigarQ8UZL8MF_0409438) - STRLEN(REPLACE(?templateMotifCigarQ8UZL8MF_0409438, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionQ8UZL839) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_0409440, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_0409440) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_0409440, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_0409440, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_0409440) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_0409440, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0409441) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((BOUND(?thisPositionOn12) && BOUND(?thisPositionOn13))) .
BIND(URI(CONCAT(STR(?this), '#MF_04094a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionQ8UZL858 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8UZL860 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8UZL8MF_0409453 .
?templateMotifSequenceMatchRegionQ8UZL858 faldo:begin ?templateMotifSequenceMatchBeginQ8UZL859 .
?templateMotifSequenceMatchBeginQ8UZL859 faldo:position ?templateMotifSequenceMatchBeginPositionQ8UZL854 ;
faldo:reference isoform:Q8UZL8-1 .
?templateMotifSequenceProfileAlignmentOperationQ8UZL860 edam:has_input signature:MF_04094 ;
rdf:type edam:operation_0300 .
?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0409464 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8UZL8MF_0409455 .
?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0409463 .
?targetMotifMatchRegionMatchBeginMF_0409463 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0409456 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0409464 edam:has_input signature:MF_04094 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8UZL8MF_0409453, 1, (STRLEN(?templateMotifCigarQ8UZL8MF_0409453) - STRLEN(REPLACE(?templateMotifCigarQ8UZL8MF_0409453, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionQ8UZL854) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_0409455, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_0409455) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_0409455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_0409455, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_0409455) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_0409455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0409456) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8UZL8MF_0409453, 1, (STRLEN(?templateMotifCigarQ8UZL8MF_0409453) - STRLEN(REPLACE(?templateMotifCigarQ8UZL8MF_0409453, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionQ8UZL854) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_0409455, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_0409455) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_0409455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_0409455, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_0409455) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_0409455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0409456) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_04094a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch74 faldo:location ?templateMotifSequenceMatchRegionQ8UZL875 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8UZL877 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8UZL8MF_0409470 .
?templateMotifSequenceMatchRegionQ8UZL875 faldo:begin ?templateMotifSequenceMatchBeginQ8UZL876 .
?templateMotifSequenceMatchBeginQ8UZL876 faldo:position ?templateMotifSequenceMatchBeginPositionQ8UZL871 ;
faldo:reference isoform:Q8UZL8-1 .
?templateMotifSequenceProfileAlignmentOperationQ8UZL877 edam:has_input signature:MF_04094 ;
rdf:type edam:operation_0300 .
?targetMotifMatch78 faldo:location ?targetMotifMatchRegionMatch79 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0409481 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8UZL8MF_0409472 .
?targetMotifMatchRegionMatch79 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0409480 .
?targetMotifMatchRegionMatchBeginMF_0409480 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0409473 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0409481 edam:has_input signature:MF_04094 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8UZL8MF_0409470, 1, (STRLEN(?templateMotifCigarQ8UZL8MF_0409470) - STRLEN(REPLACE(?templateMotifCigarQ8UZL8MF_0409470, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionQ8UZL871) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_0409472, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_0409472) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_0409472, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_0409472, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_0409472) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_0409472, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0409473) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8UZL8MF_0409470, 1, (STRLEN(?templateMotifCigarQ8UZL8MF_0409470) - STRLEN(REPLACE(?templateMotifCigarQ8UZL8MF_0409470, CONCAT('^(?:-*[^-]){', STR(((234 - ?templateMotifSequenceMatchBeginPositionQ8UZL871) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_0409472, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_0409472) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_0409472, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_0409472, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_0409472) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_0409472, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0409473) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_04094a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionQ8UZL892 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8UZL894 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8UZL8MF_0409487 .
?templateMotifSequenceMatchRegionQ8UZL892 faldo:begin ?templateMotifSequenceMatchBeginQ8UZL893 .
?templateMotifSequenceMatchBeginQ8UZL893 faldo:position ?templateMotifSequenceMatchBeginPositionQ8UZL888 ;
faldo:reference isoform:Q8UZL8-1 .
?templateMotifSequenceProfileAlignmentOperationQ8UZL894 edam:has_input signature:MF_04094 ;
rdf:type edam:operation_0300 .
?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0409498 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8UZL8MF_0409489 .
?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0409497 .
?targetMotifMatchRegionMatchBeginMF_0409497 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0409490 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0409498 edam:has_input signature:MF_04094 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8UZL8MF_0409487, 1, (STRLEN(?templateMotifCigarQ8UZL8MF_0409487) - STRLEN(REPLACE(?templateMotifCigarQ8UZL8MF_0409487, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionQ8UZL888) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_0409489, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_0409489) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_0409489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_0409489, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_0409489) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_0409489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0409490) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) .
BIND(URI(CONCAT(STR(?this), '#MF_04094a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionQ8UZL8107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8UZL8109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8UZL8MF_04094102 .
?templateMotifSequenceMatchRegionQ8UZL8107 faldo:begin ?templateMotifSequenceMatchBeginQ8UZL8108 .
?templateMotifSequenceMatchBeginQ8UZL8108 faldo:position ?templateMotifSequenceMatchBeginPositionQ8UZL8103 ;
faldo:reference isoform:Q8UZL8-1 .
?templateMotifSequenceProfileAlignmentOperationQ8UZL8109 edam:has_input signature:MF_04094 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04094113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8UZL8MF_04094104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04094112 .
?targetMotifMatchRegionMatchBeginMF_04094112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04094105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04094113 edam:has_input signature:MF_04094 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8UZL8MF_04094102, 1, (STRLEN(?templateMotifCigarQ8UZL8MF_04094102) - STRLEN(REPLACE(?templateMotifCigarQ8UZL8MF_04094102, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionQ8UZL8103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_04094104, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_04094104) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_04094104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_04094104, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_04094104) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_04094104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_04094105) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8UZL8MF_04094102, 1, (STRLEN(?templateMotifCigarQ8UZL8MF_04094102) - STRLEN(REPLACE(?templateMotifCigarQ8UZL8MF_04094102, CONCAT('^(?:-*[^-]){', STR(((237 - ?templateMotifSequenceMatchBeginPositionQ8UZL8103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_04094104, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_04094104) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_04094104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8UZL8MF_04094104, 1, (STRLEN(?targetMotifMatchCigarQ8UZL8MF_04094104) - STRLEN(REPLACE(?targetMotifMatchCigarQ8UZL8MF_04094104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_04094105) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) .
BIND(URI(CONCAT(STR(?this), '#MF_04094a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
}
"xsd:string |
