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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_04157#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04157#construct-template-100 |
| http://purl.uniprot.org/unirules/MF_04157#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04157#construct-template-61 |
| http://purl.uniprot.org/unirules/MF_04157#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04157#construct-template-85 |
| http://purl.uniprot.org/unirules/MF_04157#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04157#construct-template-83 |
| http://purl.uniprot.org/unirules/MF_04157#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_04157#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_04157#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_04157#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_04157#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_04157#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:978284 up:source unirule:MF_04157 . _:978285 up:source unirule:MF_04157 . _:978286 up:source unirule:MF_04157 . _:978287 up:source unirule:MF_04157 . _:978288 up:source unirule:MF_04157 . _:978289 up:source unirule:MF_04157 . _:978290 up:source unirule:MF_04157 . _:978291 up:source unirule:MF_04157 . _:978292 up:source unirule:MF_04157 . _:978293 up:source unirule:MF_04157 . _:978294 up:source unirule:MF_04157 . _:978295 up:source unirule:MF_04157 . _:978296 up:source unirule:MF_04157 . _:978297 up:source unirule:MF_04157 . _:978298 up:source unirule:MF_04157 . _:978299 up:source unirule:MF_04157 . _:978300 up:source unirule:MF_04157 . ?this up:alternativeName ?name1 ; up:annotation ?annotation2 , ?annotation3 , ?annotation4 ; up:classifiedWith GO:0003899 , GO:0016740 , GO:0039693 , keyword:1194 , keyword:244 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.7.-' ; up:fullName 'DNA primase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'DNA priming protein' ; rdf:type up:Structured_Name . ?annotation2 a up:Function_Annotation ; rdfs:comment "Synthesizes short RNA primers for the lagging strand DNA replication. The primase synthesizes short RNA primers on the lagging strand that the polymerase elongates using dNTPs. Recognizes two trinucleotide sequences 5'-GTT-3' and 5'-GCT-3' in vitro, but uses only the first as the priming site in vivo." . ?annotation3 a up:Subunit_Annotation ; rdfs:comment 'Monomer. Hexamer. Interacts with the DnaB-like replicative helicase; this interaction forms the active primosome complex, which is composed of 6 helicase and 1 primase subunits and expresses full helicase and primase activities. Interacts (via C-terminus) with the single-stranded DNA-binding protein. Part of the replicase complex that includes the DNA polymerase, the polymerase clamp, the clamp loader complex, the single-stranded DNA binding protein, the primase, the DnaB-like replicative helicase and the helicase assembly factor.' . ?annotation4 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the Tequatrovirus DNA primase family.' . ?case5 up:classifiedWith GO:0008270 , keyword:862 . ?pfs6 up:annotation ?annotation7 , ?annotation13 , ?annotation19 , ?annotation25 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; up:ligand ?ligand10 ; rdf:type up:Binding_Site_Annotation . ?pfsb8 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?ligand10 rdfs:subClassOf chebi:29105 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; up:ligand ?ligand16 ; rdf:type up:Binding_Site_Annotation . ?pfsb14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?ligand16 rdfs:subClassOf chebi:29105 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; up:ligand ?ligand22 ; rdf:type up:Binding_Site_Annotation . ?pfsb20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand22 rdfs:subClassOf chebi:29105 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf chebi:29105 . _:978301 a rdf:Statement ; up:attribution _:978284 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:978302 a rdf:Statement ; up:attribution _:978285 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:978303 a rdf:Statement ; up:attribution _:978286 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:978304 a rdf:Statement ; up:attribution _:978287 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:978305 a rdf:Statement ; up:attribution _:978288 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:978306 a rdf:Statement ; up:attribution _:978289 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1194 . _:978307 a rdf:Statement ; up:attribution _:978290 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:244 . _:978308 a rdf:Statement ; up:attribution _:978291 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:978309 a rdf:Statement ; up:attribution _:978292 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0039693 . _:978310 a rdf:Statement ; up:attribution _:978293 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016740 . _:978311 a rdf:Statement ; up:attribution _:978294 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003899 . _:978312 a rdf:Statement ; up:attribution _:978295 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:978313 a rdf:Statement ; up:attribution _:978296 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:978314 a rdf:Statement ; up:source unirule:MF_04157 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:978315 a rdf:Statement ; up:attribution _:978297 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:978316 a rdf:Statement ; up:source unirule:MF_04157 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:978317 a rdf:Statement ; up:attribution _:978298 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:978318 a rdf:Statement ; up:source unirule:MF_04157 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:978319 a rdf:Statement ; up:attribution _:978299 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:978320 a rdf:Statement ; up:source unirule:MF_04157 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:978321 a rdf:Statement ; up:attribution _:978300 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04157 #Rule MF_04157 Created by:? on:2021-02-26 Modified by:Catherine Rivoire on:2025-03-21 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04157 . ?thisOrganism rdfs:subClassOf+ taxon:10665 . BIND(URI(CONCAT(STR(?this), '#MF_04157a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04157a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_04157a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_04157a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_04157a4')) AS ?annotation4) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch35 faldo:location ?templateMotifSequenceMatchRegionP0452036 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0452038 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP04520MF_0415731 . ?templateMotifSequenceMatchRegionP0452036 faldo:begin ?templateMotifSequenceMatchBeginP0452037 . ?templateMotifSequenceMatchBeginP0452037 faldo:position ?templateMotifSequenceMatchBeginPositionP0452032 ; faldo:reference isoform:P04520-1 . ?templateMotifSequenceProfileAlignmentOperationP0452038 edam:has_input signature:MF_04157 ; rdf:type edam:operation_0300 . ?targetMotifMatch39 faldo:location ?targetMotifMatchRegionMatch40 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0415742 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP04520MF_0415733 . ?targetMotifMatchRegionMatch40 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0415741 . ?targetMotifMatchRegionMatchBeginMF_0415741 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0415734 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0415742 edam:has_input signature:MF_04157 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04520MF_0415731, 1, (STRLEN(?templateMotifCigarP04520MF_0415731) - STRLEN(REPLACE(?templateMotifCigarP04520MF_0415731, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionP0452032) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04520MF_0415733, 1, (STRLEN(?targetMotifMatchCigarP04520MF_0415733) - STRLEN(REPLACE(?targetMotifMatchCigarP04520MF_0415733, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04520MF_0415733, 1, (STRLEN(?targetMotifMatchCigarP04520MF_0415733) - STRLEN(REPLACE(?targetMotifMatchCigarP04520MF_0415733, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) . BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0415734) - 1) AS ?thisPositionOn11) . BIND(?thisPositionOn11 AS ?thisPositionOn12) . BIND(?this AS ?pfs1t45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04520MF_0415731, 1, (STRLEN(?templateMotifCigarP04520MF_0415731) - STRLEN(REPLACE(?templateMotifCigarP04520MF_0415731, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP0452032) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04520MF_0415733, 1, (STRLEN(?targetMotifMatchCigarP04520MF_0415733) - STRLEN(REPLACE(?targetMotifMatchCigarP04520MF_0415733, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04520MF_0415733, 1, (STRLEN(?targetMotifMatchCigarP04520MF_0415733) - STRLEN(REPLACE(?targetMotifMatchCigarP04520MF_0415733, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) . BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0415734) - 1) AS ?thisPositionOn17) . BIND(?thisPositionOn17 AS ?thisPositionOn18) . BIND(?this AS ?pfs1t48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04520MF_0415731, 1, (STRLEN(?templateMotifCigarP04520MF_0415731) - STRLEN(REPLACE(?templateMotifCigarP04520MF_0415731, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP0452032) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04520MF_0415733, 1, (STRLEN(?targetMotifMatchCigarP04520MF_0415733) - STRLEN(REPLACE(?targetMotifMatchCigarP04520MF_0415733, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04520MF_0415733, 1, (STRLEN(?targetMotifMatchCigarP04520MF_0415733) - STRLEN(REPLACE(?targetMotifMatchCigarP04520MF_0415733, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) . BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0415734) - 1) AS ?thisPositionOn23) . BIND(?thisPositionOn23 AS ?thisPositionOn24) . BIND(?this AS ?pfs1t51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04520MF_0415731, 1, (STRLEN(?templateMotifCigarP04520MF_0415731) - STRLEN(REPLACE(?templateMotifCigarP04520MF_0415731, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP0452032) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04520MF_0415733, 1, (STRLEN(?targetMotifMatchCigarP04520MF_0415733) - STRLEN(REPLACE(?targetMotifMatchCigarP04520MF_0415733, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04520MF_0415733, 1, (STRLEN(?targetMotifMatchCigarP04520MF_0415733) - STRLEN(REPLACE(?targetMotifMatchCigarP04520MF_0415733, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) . BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0415734) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs1t54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag55) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag55, ?UNBOUND_VARIABLE) AS ?case5) . } "xsd:string |
| http://purl.uniprot.org/unirules/MF_04157 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_04157#construct |