Results
Your Query
◀
◀
| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-87 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-86 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-88 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-64 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-89 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-109 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-81 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-80 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-83 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-82 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-113 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-112 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-111 |
| http://purl.uniprot.org/unirules/MF_04164#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_04164#construct-template-110 |
| http://purl.uniprot.org/unirules/MF_04164#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_04164#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_04164#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_04164#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_04164#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_04164#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:980462 up:source unirule:MF_04164 . _:980463 up:source unirule:MF_04164 . _:980464 up:source unirule:MF_04164 . _:980465 up:source unirule:MF_04164 . _:980466 up:source unirule:MF_04164 . _:980467 up:source unirule:MF_04164 . _:980468 up:source unirule:MF_04164 . _:980469 up:source unirule:MF_04164 . _:980470 up:source unirule:MF_04164 . _:980471 up:source unirule:MF_04164 . _:980472 up:source unirule:MF_04164 . _:980473 up:source unirule:MF_04164 . _:980474 up:source unirule:MF_04164 . _:980475 up:source unirule:MF_04164 . _:980476 up:source unirule:MF_04164 . _:980477 up:source unirule:MF_04164 . _:980478 up:source unirule:MF_04164 . _:980479 up:source unirule:MF_04164 . _:980480 up:source unirule:MF_04164 . _:980481 up:source unirule:MF_04164 . ?this up:alternativeName ?name1 ; up:annotation ?annotation2 , ?annotation3 , ?annotation4 ; up:classifiedWith GO:0003677 , GO:0016987 , GO:0019086 , keyword:1195 , keyword:238 , keyword:548 , keyword:731 , keyword:805 , keyword:808 , keyword:945 ; up:recommendedName ?name0 . ?name0 up:fullName 'RNA polymerase sigma-like factor' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Promoter specificity factor' ; rdf:type up:Structured_Name . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Plays a role in the transcription of the viral late genes by acting as a late promoter recognition subunit. Associates with host RNA polymerase (RNAP) core and thus replaces the host sigma-70/rpoD subunit in the complex. May also play a role in DNA packaging by interacting with the terminase subunit gp17.' . ?annotation3 a up:Subunit_Annotation ; rdfs:comment 'Interacts with the host RNA polymerase catalytic core formed by RpoA, RpoB, RpoC and RpoZ to form the RNAP-gp55 holoenzyme. Part of the transcription activation complex containing host RNAP, the viral RNA polymerase sigma-like factor, the late transcription coactivator, and the sliding clamp. Interacts with the terminase large subunit; this interaction may load the terminase onto DNA for packaging.' . ?annotation4 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the Tevenvirinae RNA polymerase sigma-like factor family.' . ?pfs5 up:annotation ?annotation6 . ?annotation6 faldo:begin ?pfsb7 ; faldo:end ?pfse8 ; rdf:type up:Region_Annotation ; rdfs:comment 'Interaction with host RNAP core and recognition of the promoter specific element' . ?pfsb7 faldo:position ?thisPositionOn9 ; rdf:type faldo:ExactPosition . ?pfse8 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; rdf:type up:Nucleotide_Binding_Annotation . ?pfsb13 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; rdf:type up:Site_Annotation ; rdfs:comment 'Interaction with host RNAP' . ?pfsb19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; rdf:type up:Site_Annotation ; rdfs:comment 'Interaction with host RNAP' . ?pfsb25 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; rdf:type up:Site_Annotation ; rdfs:comment 'Interaction with host RNAP' . ?pfsb31 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . _:980482 a rdf:Statement ; up:attribution _:980462 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:980483 a rdf:Statement ; up:attribution _:980463 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:980484 a rdf:Statement ; up:attribution _:980464 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:980485 a rdf:Statement ; up:attribution _:980465 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:980486 a rdf:Statement ; up:attribution _:980466 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:980487 a rdf:Statement ; up:attribution _:980467 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:980488 a rdf:Statement ; up:attribution _:980468 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:945 . _:980489 a rdf:Statement ; up:attribution _:980469 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:548 . _:980490 a rdf:Statement ; up:attribution _:980470 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:731 . _:980491 a rdf:Statement ; up:attribution _:980471 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1195 . _:980492 a rdf:Statement ; up:attribution _:980472 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:805 . _:980493 a rdf:Statement ; up:attribution _:980473 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:980494 a rdf:Statement ; up:attribution _:980474 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016987 . _:980495 a rdf:Statement ; up:attribution _:980475 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003677 . _:980496 a rdf:Statement ; up:attribution _:980476 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019086 . _:980497 a rdf:Statement ; up:source unirule:MF_04164 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:980498 a rdf:Statement ; up:attribution _:980477 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:980499 a rdf:Statement ; up:source unirule:MF_04164 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:980500 a rdf:Statement ; up:attribution _:980478 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:980501 a rdf:Statement ; up:source unirule:MF_04164 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:980502 a rdf:Statement ; up:attribution _:980479 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:980503 a rdf:Statement ; up:source unirule:MF_04164 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:980504 a rdf:Statement ; up:attribution _:980480 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:980505 a rdf:Statement ; up:source unirule:MF_04164 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:980506 a rdf:Statement ; up:attribution _:980481 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04164 #Rule MF_04164 Created by:? on:2021-04-16 Modified by:ipedruzz on:2021-04-20 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04164 . ?thisOrganism rdfs:subClassOf+ taxon:10239 . BIND(URI(CONCAT(STR(?this), '#MF_04164a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04164a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_04164a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_04164a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_04164a4')) AS ?annotation4) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionP0452440 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0452442 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP04524MF_0416435 . ?templateMotifSequenceMatchRegionP0452440 faldo:begin ?templateMotifSequenceMatchBeginP0452441 . ?templateMotifSequenceMatchBeginP0452441 faldo:position ?templateMotifSequenceMatchBeginPositionP0452436 ; faldo:reference isoform:P04524-1 . ?templateMotifSequenceProfileAlignmentOperationP0452442 edam:has_input signature:MF_04164 ; rdf:type edam:operation_0300 . ?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0416446 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP04524MF_0416437 . ?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0416445 . ?targetMotifMatchRegionMatchBeginMF_0416445 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0416438 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0416446 edam:has_input signature:MF_04164 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04524MF_0416435, 1, (STRLEN(?templateMotifCigarP04524MF_0416435) - STRLEN(REPLACE(?templateMotifCigarP04524MF_0416435, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP0452436) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04524MF_0416437, 1, (STRLEN(?targetMotifMatchCigarP04524MF_0416437) - STRLEN(REPLACE(?targetMotifMatchCigarP04524MF_0416437, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04524MF_0416437, 1, (STRLEN(?targetMotifMatchCigarP04524MF_0416437) - STRLEN(REPLACE(?targetMotifMatchCigarP04524MF_0416437, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) . BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0416438) - 1) AS ?thisPositionOn9) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04524MF_0416435, 1, (STRLEN(?templateMotifCigarP04524MF_0416435) - STRLEN(REPLACE(?templateMotifCigarP04524MF_0416435, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionP0452436) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04524MF_0416437, 1, (STRLEN(?targetMotifMatchCigarP04524MF_0416437) - STRLEN(REPLACE(?targetMotifMatchCigarP04524MF_0416437, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04524MF_0416437, 1, (STRLEN(?targetMotifMatchCigarP04524MF_0416437) - STRLEN(REPLACE(?targetMotifMatchCigarP04524MF_0416437, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) . BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0416438) - 1) AS ?thisPositionOn10) . BIND(?this AS ?pfs1t51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn9))) AS ?pfsb7) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfse8) . FILTER ((BOUND(?thisPositionOn9) && BOUND(?thisPositionOn10))) . BIND(URI(CONCAT(STR(?this), '#MF_04164a6')) AS ?annotation6) . BIND(?this AS ?pfs5) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch56 faldo:location ?templateMotifSequenceMatchRegionP0452457 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0452459 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP04524MF_0416452 . ?templateMotifSequenceMatchRegionP0452457 faldo:begin ?templateMotifSequenceMatchBeginP0452458 . ?templateMotifSequenceMatchBeginP0452458 faldo:position ?templateMotifSequenceMatchBeginPositionP0452453 ; faldo:reference isoform:P04524-1 . ?templateMotifSequenceProfileAlignmentOperationP0452459 edam:has_input signature:MF_04164 ; rdf:type edam:operation_0300 . ?targetMotifMatch60 faldo:location ?targetMotifMatchRegionMatch61 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0416463 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP04524MF_0416454 . ?targetMotifMatchRegionMatch61 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0416462 . ?targetMotifMatchRegionMatchBeginMF_0416462 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0416455 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0416463 edam:has_input signature:MF_04164 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04524MF_0416452, 1, (STRLEN(?templateMotifCigarP04524MF_0416452) - STRLEN(REPLACE(?templateMotifCigarP04524MF_0416452, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionP0452453) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04524MF_0416454, 1, (STRLEN(?targetMotifMatchCigarP04524MF_0416454) - STRLEN(REPLACE(?targetMotifMatchCigarP04524MF_0416454, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04524MF_0416454, 1, (STRLEN(?targetMotifMatchCigarP04524MF_0416454) - STRLEN(REPLACE(?targetMotifMatchCigarP04524MF_0416454, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) . BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0416455) - 1) AS ?thisPositionOn15) . BIND(?thisPositionOn15 AS ?thisPositionOn16) . BIND(?this AS ?pfs1t66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) . FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_04164a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionP0452472 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0452474 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP04524MF_0416467 . ?templateMotifSequenceMatchRegionP0452472 faldo:begin ?templateMotifSequenceMatchBeginP0452473 . ?templateMotifSequenceMatchBeginP0452473 faldo:position ?templateMotifSequenceMatchBeginPositionP0452468 ; faldo:reference isoform:P04524-1 . ?templateMotifSequenceProfileAlignmentOperationP0452474 edam:has_input signature:MF_04164 ; rdf:type edam:operation_0300 . ?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0416478 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP04524MF_0416469 . ?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0416477 . ?targetMotifMatchRegionMatchBeginMF_0416477 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0416470 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0416478 edam:has_input signature:MF_04164 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04524MF_0416467, 1, (STRLEN(?templateMotifCigarP04524MF_0416467) - STRLEN(REPLACE(?templateMotifCigarP04524MF_0416467, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP0452468) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04524MF_0416469, 1, (STRLEN(?targetMotifMatchCigarP04524MF_0416469) - STRLEN(REPLACE(?targetMotifMatchCigarP04524MF_0416469, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04524MF_0416469, 1, (STRLEN(?targetMotifMatchCigarP04524MF_0416469) - STRLEN(REPLACE(?targetMotifMatchCigarP04524MF_0416469, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) . BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0416470) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t81) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_04164a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionP0452487 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0452489 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP04524MF_0416482 . ?templateMotifSequenceMatchRegionP0452487 faldo:begin ?templateMotifSequenceMatchBeginP0452488 . ?templateMotifSequenceMatchBeginP0452488 faldo:position ?templateMotifSequenceMatchBeginPositionP0452483 ; faldo:reference isoform:P04524-1 . ?templateMotifSequenceProfileAlignmentOperationP0452489 edam:has_input signature:MF_04164 ; rdf:type edam:operation_0300 . ?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0416493 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP04524MF_0416484 . ?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0416492 . ?targetMotifMatchRegionMatchBeginMF_0416492 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0416485 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0416493 edam:has_input signature:MF_04164 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04524MF_0416482, 1, (STRLEN(?templateMotifCigarP04524MF_0416482) - STRLEN(REPLACE(?templateMotifCigarP04524MF_0416482, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP0452483) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04524MF_0416484, 1, (STRLEN(?targetMotifMatchCigarP04524MF_0416484) - STRLEN(REPLACE(?targetMotifMatchCigarP04524MF_0416484, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04524MF_0416484, 1, (STRLEN(?targetMotifMatchCigarP04524MF_0416484) - STRLEN(REPLACE(?targetMotifMatchCigarP04524MF_0416484, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) . BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0416485) - 1) AS ?thisPositionOn27) . BIND(?thisPositionOn27 AS ?thisPositionOn28) . BIND(?this AS ?pfs1t96) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_04164a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionP04524102 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04524104 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP04524MF_0416497 . ?templateMotifSequenceMatchRegionP04524102 faldo:begin ?templateMotifSequenceMatchBeginP04524103 . ?templateMotifSequenceMatchBeginP04524103 faldo:position ?templateMotifSequenceMatchBeginPositionP0452498 ; faldo:reference isoform:P04524-1 . ?templateMotifSequenceProfileAlignmentOperationP04524104 edam:has_input signature:MF_04164 ; rdf:type edam:operation_0300 . ?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04164108 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP04524MF_0416499 . ?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04164107 . ?targetMotifMatchRegionMatchBeginMF_04164107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04164100 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04164108 edam:has_input signature:MF_04164 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04524MF_0416497, 1, (STRLEN(?templateMotifCigarP04524MF_0416497) - STRLEN(REPLACE(?templateMotifCigarP04524MF_0416497, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP0452498) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04524MF_0416499, 1, (STRLEN(?targetMotifMatchCigarP04524MF_0416499) - STRLEN(REPLACE(?targetMotifMatchCigarP04524MF_0416499, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04524MF_0416499, 1, (STRLEN(?targetMotifMatchCigarP04524MF_0416499) - STRLEN(REPLACE(?targetMotifMatchCigarP04524MF_0416499, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) . BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_04164100) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs1t111) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_04164a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_04164 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_04164#construct |