| http://purl.uniprot.org/unirules/MF_04204#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:985468 up:source unirule:MF_04204 .
_:985469 up:source unirule:MF_04204 .
_:985470 up:source unirule:MF_04204 .
_:985471 up:source unirule:MF_04204 .
_:985472 up:source unirule:MF_04204 .
_:985473 up:source unirule:MF_04204 .
_:985474 up:source unirule:MF_04204 .
_:985475 up:source unirule:MF_04204 .
_:985476 up:source unirule:MF_04204 .
_:985477 up:source unirule:MF_04204 .
_:985478 up:source unirule:MF_04204 .
_:985479 up:source unirule:MF_04204 .
_:985480 up:source unirule:MF_04204 .
_:985481 up:source unirule:MF_04204 .
_:985482 up:source unirule:MF_04204 .
_:985483 up:source unirule:MF_04204 .
_:985484 up:source unirule:MF_04204 .
_:985485 up:source unirule:MF_04204 .
_:985486 up:source unirule:MF_04204 .
_:985487 up:source unirule:MF_04204 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0016020 ,
GO:0044177 ,
GO:0044178 ,
GO:0046760 ,
GO:0140975 ,
keyword:1040 ,
keyword:1043 ,
keyword:1133 ,
keyword:472 ,
keyword:53 ,
keyword:812 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Envelope small membrane protein' ;
up:shortName 'E protein' ,
'sM protein' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'E' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Plays a central role in virus morphogenesis and assembly. Acts as a viroporin and self-assembles in host membranes forming pentameric protein-lipid pores that allow ion transport. Also plays a role in the induction of apoptosis.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Homopentamer. Interacts with membrane protein M in the budding compartment of the host cell, which is located between endoplasmic reticulum and the Golgi complex. Interacts with Nucleoprotein.' .
?annotation4 a up:Subcellular_Location_Annotation ;
rdfs:comment 'The cytoplasmic tail functions as a Golgi complex-targeting signal' .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the betacoronaviruses E protein family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Virion surface' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Intravirion' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:985488 a rdf:Statement ;
up:attribution _:985468 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:985489 a rdf:Statement ;
up:attribution _:985469 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:985490 a rdf:Statement ;
up:attribution _:985470 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:985491 a rdf:Statement ;
up:attribution _:985471 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:985492 a rdf:Statement ;
up:attribution _:985472 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:985493 a rdf:Statement ;
up:attribution _:985473 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:985494 a rdf:Statement ;
up:attribution _:985474 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:53 .
_:985495 a rdf:Statement ;
up:attribution _:985475 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1040 .
_:985496 a rdf:Statement ;
up:attribution _:985476 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:985497 a rdf:Statement ;
up:attribution _:985477 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:985498 a rdf:Statement ;
up:attribution _:985478 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:985499 a rdf:Statement ;
up:attribution _:985479 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:985500 a rdf:Statement ;
up:attribution _:985480 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044177 .
_:985501 a rdf:Statement ;
up:attribution _:985481 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044178 .
_:985502 a rdf:Statement ;
up:attribution _:985482 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:985503 a rdf:Statement ;
up:attribution _:985483 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0140975 .
_:985504 a rdf:Statement ;
up:attribution _:985484 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046760 .
_:985505 a rdf:Statement ;
up:source unirule:MF_04204 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:985506 a rdf:Statement ;
up:attribution _:985485 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:985507 a rdf:Statement ;
up:source unirule:MF_04204 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:985508 a rdf:Statement ;
up:attribution _:985486 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:985509 a rdf:Statement ;
up:source unirule:MF_04204 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:985510 a rdf:Statement ;
up:attribution _:985487 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04204
#Rule MF_04204 Created by:? on:2018-04-03 Modified by:Catherine Rivoire on:2023-07-28
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04204 .
?thisOrganism rdfs:subClassOf+ taxon:694002 .
BIND(URI(CONCAT(STR(?this), '#MF_04204a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04204a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04204a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04204a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04204a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionP5963730 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5963732 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP59637MF_0420425 .
?templateMotifSequenceMatchRegionP5963730 faldo:begin ?templateMotifSequenceMatchBeginP5963731 .
?templateMotifSequenceMatchBeginP5963731 faldo:position ?templateMotifSequenceMatchBeginPositionP5963726 ;
faldo:reference isoform:P59637-1 .
?templateMotifSequenceProfileAlignmentOperationP5963732 edam:has_input signature:MF_04204 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420436 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP59637MF_0420427 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420435 .
?targetMotifMatchRegionMatchBeginMF_0420435 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420428 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0420436 edam:has_input signature:MF_04204 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59637MF_0420425, 1, (STRLEN(?templateMotifCigarP59637MF_0420425) - STRLEN(REPLACE(?templateMotifCigarP59637MF_0420425, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP5963726) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59637MF_0420427, 1, (STRLEN(?targetMotifMatchCigarP59637MF_0420427) - STRLEN(REPLACE(?targetMotifMatchCigarP59637MF_0420427, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59637MF_0420427, 1, (STRLEN(?targetMotifMatchCigarP59637MF_0420427) - STRLEN(REPLACE(?targetMotifMatchCigarP59637MF_0420427, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0420428) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((BOUND(?thisPositionOn11) && BOUND(?thisPositionOn12))) .
BIND(URI(CONCAT(STR(?this), '#MF_04204a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionP5963745 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5963747 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP59637MF_0420440 .
?templateMotifSequenceMatchRegionP5963745 faldo:begin ?templateMotifSequenceMatchBeginP5963746 .
?templateMotifSequenceMatchBeginP5963746 faldo:position ?templateMotifSequenceMatchBeginPositionP5963741 ;
faldo:reference isoform:P59637-1 .
?templateMotifSequenceProfileAlignmentOperationP5963747 edam:has_input signature:MF_04204 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420451 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP59637MF_0420442 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420450 .
?targetMotifMatchRegionMatchBeginMF_0420450 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420443 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0420451 edam:has_input signature:MF_04204 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59637MF_0420440, 1, (STRLEN(?templateMotifCigarP59637MF_0420440) - STRLEN(REPLACE(?templateMotifCigarP59637MF_0420440, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP5963741) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59637MF_0420442, 1, (STRLEN(?targetMotifMatchCigarP59637MF_0420442) - STRLEN(REPLACE(?targetMotifMatchCigarP59637MF_0420442, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59637MF_0420442, 1, (STRLEN(?targetMotifMatchCigarP59637MF_0420442) - STRLEN(REPLACE(?targetMotifMatchCigarP59637MF_0420442, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0420443) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59637MF_0420440, 1, (STRLEN(?templateMotifCigarP59637MF_0420440) - STRLEN(REPLACE(?templateMotifCigarP59637MF_0420440, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionP5963741) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59637MF_0420442, 1, (STRLEN(?targetMotifMatchCigarP59637MF_0420442) - STRLEN(REPLACE(?targetMotifMatchCigarP59637MF_0420442, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59637MF_0420442, 1, (STRLEN(?targetMotifMatchCigarP59637MF_0420442) - STRLEN(REPLACE(?targetMotifMatchCigarP59637MF_0420442, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0420443) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_04204a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionP5963762 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5963764 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP59637MF_0420457 .
?templateMotifSequenceMatchRegionP5963762 faldo:begin ?templateMotifSequenceMatchBeginP5963763 .
?templateMotifSequenceMatchBeginP5963763 faldo:position ?templateMotifSequenceMatchBeginPositionP5963758 ;
faldo:reference isoform:P59637-1 .
?templateMotifSequenceProfileAlignmentOperationP5963764 edam:has_input signature:MF_04204 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420468 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP59637MF_0420459 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420467 .
?targetMotifMatchRegionMatchBeginMF_0420467 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420460 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0420468 edam:has_input signature:MF_04204 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59637MF_0420457, 1, (STRLEN(?templateMotifCigarP59637MF_0420457) - STRLEN(REPLACE(?templateMotifCigarP59637MF_0420457, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP5963758) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59637MF_0420459, 1, (STRLEN(?targetMotifMatchCigarP59637MF_0420459) - STRLEN(REPLACE(?targetMotifMatchCigarP59637MF_0420459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59637MF_0420459, 1, (STRLEN(?targetMotifMatchCigarP59637MF_0420459) - STRLEN(REPLACE(?targetMotifMatchCigarP59637MF_0420459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0420460) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_04204a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
}
"xsd:string |
