| http://purl.uniprot.org/unirules/MF_04205#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:985852 up:source unirule:MF_04205 .
_:985853 up:source unirule:MF_04205 .
_:985854 up:source unirule:MF_04205 .
_:985855 up:source unirule:MF_04205 .
_:985856 up:source unirule:MF_04205 .
_:985857 up:source unirule:MF_04205 .
_:985858 up:source unirule:MF_04205 .
_:985859 up:source unirule:MF_04205 .
_:985860 up:source unirule:MF_04205 .
_:985861 up:source unirule:MF_04205 .
_:985862 up:source unirule:MF_04205 .
_:985863 up:source unirule:MF_04205 .
_:985864 up:source unirule:MF_04205 .
_:985865 up:source unirule:MF_04205 .
_:985866 up:source unirule:MF_04205 .
_:985867 up:source unirule:MF_04205 .
_:985868 up:source unirule:MF_04205 .
_:985869 up:source unirule:MF_04205 .
_:985870 up:source unirule:MF_04205 .
_:985871 up:source unirule:MF_04205 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0016020 ,
GO:0044177 ,
GO:0044178 ,
GO:0046760 ,
GO:0140975 ,
keyword:1040 ,
keyword:1043 ,
keyword:1133 ,
keyword:472 ,
keyword:53 ,
keyword:812 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Envelope small membrane protein' ;
up:shortName 'E protein' ,
'sM protein' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'E' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Plays a central role in virus morphogenesis and assembly. Acts as a viroporin and self-assembles in host membranes forming pentameric protein-lipid pores that allow ion transport. Also plays a role in the induction of apoptosis.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Homopentamer. Interacts with membrane protein M in the budding compartment of the host cell, which is located between endoplasmic reticulum and the Golgi complex. Interacts with Nucleoprotein.' .
?annotation4 a up:Subcellular_Location_Annotation ;
rdfs:comment 'The cytoplasmic tail functions as a Golgi complex-targeting signal' .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the alphacoronaviruses E protein family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Virion surface' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Intravirion' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:985872 a rdf:Statement ;
up:attribution _:985852 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:985873 a rdf:Statement ;
up:attribution _:985853 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:985874 a rdf:Statement ;
up:attribution _:985854 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:985875 a rdf:Statement ;
up:attribution _:985855 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:985876 a rdf:Statement ;
up:attribution _:985856 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:985877 a rdf:Statement ;
up:attribution _:985857 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:985878 a rdf:Statement ;
up:attribution _:985858 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:53 .
_:985879 a rdf:Statement ;
up:attribution _:985859 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1040 .
_:985880 a rdf:Statement ;
up:attribution _:985860 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:985881 a rdf:Statement ;
up:attribution _:985861 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:985882 a rdf:Statement ;
up:attribution _:985862 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:985883 a rdf:Statement ;
up:attribution _:985863 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:985884 a rdf:Statement ;
up:attribution _:985864 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044177 .
_:985885 a rdf:Statement ;
up:attribution _:985865 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044178 .
_:985886 a rdf:Statement ;
up:attribution _:985866 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:985887 a rdf:Statement ;
up:attribution _:985867 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0140975 .
_:985888 a rdf:Statement ;
up:attribution _:985868 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046760 .
_:985889 a rdf:Statement ;
up:source unirule:MF_04205 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:985890 a rdf:Statement ;
up:attribution _:985869 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:985891 a rdf:Statement ;
up:source unirule:MF_04205 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:985892 a rdf:Statement ;
up:attribution _:985870 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:985893 a rdf:Statement ;
up:source unirule:MF_04205 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:985894 a rdf:Statement ;
up:attribution _:985871 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04205
#Rule MF_04205 Created by:? on:2018-04-03 Modified by:Catherine Rivoire on:2023-07-28
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04205 .
?thisOrganism rdfs:subClassOf+ taxon:693996 .
BIND(URI(CONCAT(STR(?this), '#MF_04205a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04205a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04205a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04205a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04205a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionQ6Q1S030 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6Q1S032 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6Q1S0MF_0420525 .
?templateMotifSequenceMatchRegionQ6Q1S030 faldo:begin ?templateMotifSequenceMatchBeginQ6Q1S031 .
?templateMotifSequenceMatchBeginQ6Q1S031 faldo:position ?templateMotifSequenceMatchBeginPositionQ6Q1S026 ;
faldo:reference isoform:Q6Q1S0-1 .
?templateMotifSequenceProfileAlignmentOperationQ6Q1S032 edam:has_input signature:MF_04205 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420536 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6Q1S0MF_0420527 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420535 .
?targetMotifMatchRegionMatchBeginMF_0420535 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420528 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0420536 edam:has_input signature:MF_04205 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6Q1S0MF_0420525, 1, (STRLEN(?templateMotifCigarQ6Q1S0MF_0420525) - STRLEN(REPLACE(?templateMotifCigarQ6Q1S0MF_0420525, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionQ6Q1S026) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6Q1S0MF_0420527, 1, (STRLEN(?targetMotifMatchCigarQ6Q1S0MF_0420527) - STRLEN(REPLACE(?targetMotifMatchCigarQ6Q1S0MF_0420527, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6Q1S0MF_0420527, 1, (STRLEN(?targetMotifMatchCigarQ6Q1S0MF_0420527) - STRLEN(REPLACE(?targetMotifMatchCigarQ6Q1S0MF_0420527, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0420528) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((BOUND(?thisPositionOn11) && BOUND(?thisPositionOn12))) .
BIND(URI(CONCAT(STR(?this), '#MF_04205a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionQ6Q1S045 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6Q1S047 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6Q1S0MF_0420540 .
?templateMotifSequenceMatchRegionQ6Q1S045 faldo:begin ?templateMotifSequenceMatchBeginQ6Q1S046 .
?templateMotifSequenceMatchBeginQ6Q1S046 faldo:position ?templateMotifSequenceMatchBeginPositionQ6Q1S041 ;
faldo:reference isoform:Q6Q1S0-1 .
?templateMotifSequenceProfileAlignmentOperationQ6Q1S047 edam:has_input signature:MF_04205 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420551 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6Q1S0MF_0420542 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420550 .
?targetMotifMatchRegionMatchBeginMF_0420550 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420543 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0420551 edam:has_input signature:MF_04205 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6Q1S0MF_0420540, 1, (STRLEN(?templateMotifCigarQ6Q1S0MF_0420540) - STRLEN(REPLACE(?templateMotifCigarQ6Q1S0MF_0420540, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionQ6Q1S041) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6Q1S0MF_0420542, 1, (STRLEN(?targetMotifMatchCigarQ6Q1S0MF_0420542) - STRLEN(REPLACE(?targetMotifMatchCigarQ6Q1S0MF_0420542, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6Q1S0MF_0420542, 1, (STRLEN(?targetMotifMatchCigarQ6Q1S0MF_0420542) - STRLEN(REPLACE(?targetMotifMatchCigarQ6Q1S0MF_0420542, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0420543) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6Q1S0MF_0420540, 1, (STRLEN(?templateMotifCigarQ6Q1S0MF_0420540) - STRLEN(REPLACE(?templateMotifCigarQ6Q1S0MF_0420540, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionQ6Q1S041) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6Q1S0MF_0420542, 1, (STRLEN(?targetMotifMatchCigarQ6Q1S0MF_0420542) - STRLEN(REPLACE(?targetMotifMatchCigarQ6Q1S0MF_0420542, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6Q1S0MF_0420542, 1, (STRLEN(?targetMotifMatchCigarQ6Q1S0MF_0420542) - STRLEN(REPLACE(?targetMotifMatchCigarQ6Q1S0MF_0420542, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0420543) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_04205a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionQ6Q1S062 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6Q1S064 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6Q1S0MF_0420557 .
?templateMotifSequenceMatchRegionQ6Q1S062 faldo:begin ?templateMotifSequenceMatchBeginQ6Q1S063 .
?templateMotifSequenceMatchBeginQ6Q1S063 faldo:position ?templateMotifSequenceMatchBeginPositionQ6Q1S058 ;
faldo:reference isoform:Q6Q1S0-1 .
?templateMotifSequenceProfileAlignmentOperationQ6Q1S064 edam:has_input signature:MF_04205 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420568 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6Q1S0MF_0420559 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420567 .
?targetMotifMatchRegionMatchBeginMF_0420567 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420560 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0420568 edam:has_input signature:MF_04205 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6Q1S0MF_0420557, 1, (STRLEN(?templateMotifCigarQ6Q1S0MF_0420557) - STRLEN(REPLACE(?templateMotifCigarQ6Q1S0MF_0420557, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionQ6Q1S058) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6Q1S0MF_0420559, 1, (STRLEN(?targetMotifMatchCigarQ6Q1S0MF_0420559) - STRLEN(REPLACE(?targetMotifMatchCigarQ6Q1S0MF_0420559, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6Q1S0MF_0420559, 1, (STRLEN(?targetMotifMatchCigarQ6Q1S0MF_0420559) - STRLEN(REPLACE(?targetMotifMatchCigarQ6Q1S0MF_0420559, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0420560) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_04205a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
}
"xsd:string |
