| http://purl.uniprot.org/unirules/MF_04206#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:986236 up:source unirule:MF_04206 .
_:986237 up:source unirule:MF_04206 .
_:986238 up:source unirule:MF_04206 .
_:986239 up:source unirule:MF_04206 .
_:986240 up:source unirule:MF_04206 .
_:986241 up:source unirule:MF_04206 .
_:986242 up:source unirule:MF_04206 .
_:986243 up:source unirule:MF_04206 .
_:986244 up:source unirule:MF_04206 .
_:986245 up:source unirule:MF_04206 .
_:986246 up:source unirule:MF_04206 .
_:986247 up:source unirule:MF_04206 .
_:986248 up:source unirule:MF_04206 .
_:986249 up:source unirule:MF_04206 .
_:986250 up:source unirule:MF_04206 .
_:986251 up:source unirule:MF_04206 .
_:986252 up:source unirule:MF_04206 .
_:986253 up:source unirule:MF_04206 .
_:986254 up:source unirule:MF_04206 .
_:986255 up:source unirule:MF_04206 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0016020 ,
GO:0044177 ,
GO:0044178 ,
GO:0046760 ,
GO:0140975 ,
keyword:1040 ,
keyword:1043 ,
keyword:1133 ,
keyword:472 ,
keyword:53 ,
keyword:812 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Envelope small membrane protein' ;
up:shortName 'E protein' ,
'sM protein' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'E' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Plays a central role in virus morphogenesis and assembly. Acts as a viroporin and self-assembles in host membranes forming pentameric protein-lipid pores that allow ion transport. Also plays a role in the induction of apoptosis.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Homooligomer. Interacts with the M membrane protein in the budding compartment of the host cell, which is located between endoplasmic reticulum and the Golgi complex. The cytoplasmic tails of both proteins are important for this function. Interacts with Nucleoprotein.' .
?annotation4 a up:Subcellular_Location_Annotation ;
rdfs:comment 'The cytoplasmic tail functions as a Golgi complex-targeting signal' .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the gammacoronaviruses E protein family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Virion surface' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Intravirion' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:986256 a rdf:Statement ;
up:attribution _:986236 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:986257 a rdf:Statement ;
up:attribution _:986237 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:986258 a rdf:Statement ;
up:attribution _:986238 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:986259 a rdf:Statement ;
up:attribution _:986239 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:986260 a rdf:Statement ;
up:attribution _:986240 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:986261 a rdf:Statement ;
up:attribution _:986241 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:986262 a rdf:Statement ;
up:attribution _:986242 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:53 .
_:986263 a rdf:Statement ;
up:attribution _:986243 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1040 .
_:986264 a rdf:Statement ;
up:attribution _:986244 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:986265 a rdf:Statement ;
up:attribution _:986245 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:986266 a rdf:Statement ;
up:attribution _:986246 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:986267 a rdf:Statement ;
up:attribution _:986247 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:986268 a rdf:Statement ;
up:attribution _:986248 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044177 .
_:986269 a rdf:Statement ;
up:attribution _:986249 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044178 .
_:986270 a rdf:Statement ;
up:attribution _:986250 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:986271 a rdf:Statement ;
up:attribution _:986251 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0140975 .
_:986272 a rdf:Statement ;
up:attribution _:986252 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046760 .
_:986273 a rdf:Statement ;
up:source unirule:MF_04206 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:986274 a rdf:Statement ;
up:attribution _:986253 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:986275 a rdf:Statement ;
up:source unirule:MF_04206 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:986276 a rdf:Statement ;
up:attribution _:986254 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:986277 a rdf:Statement ;
up:source unirule:MF_04206 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:986278 a rdf:Statement ;
up:attribution _:986255 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04206
#Rule MF_04206 Created by:? on:2018-04-03 Modified by:Catherine Rivoire on:2023-07-28
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04206 .
?thisOrganism rdfs:subClassOf+ taxon:694013 .
BIND(URI(CONCAT(STR(?this), '#MF_04206a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04206a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04206a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04206a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04206a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionQ8989430 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8989432 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ89894MF_0420625 .
?templateMotifSequenceMatchRegionQ8989430 faldo:begin ?templateMotifSequenceMatchBeginQ8989431 .
?templateMotifSequenceMatchBeginQ8989431 faldo:position ?templateMotifSequenceMatchBeginPositionQ8989426 ;
faldo:reference isoform:Q89894-1 .
?templateMotifSequenceProfileAlignmentOperationQ8989432 edam:has_input signature:MF_04206 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420636 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ89894MF_0420627 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420635 .
?targetMotifMatchRegionMatchBeginMF_0420635 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420628 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0420636 edam:has_input signature:MF_04206 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ89894MF_0420625, 1, (STRLEN(?templateMotifCigarQ89894MF_0420625) - STRLEN(REPLACE(?templateMotifCigarQ89894MF_0420625, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionQ8989426) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ89894MF_0420627, 1, (STRLEN(?targetMotifMatchCigarQ89894MF_0420627) - STRLEN(REPLACE(?targetMotifMatchCigarQ89894MF_0420627, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ89894MF_0420627, 1, (STRLEN(?targetMotifMatchCigarQ89894MF_0420627) - STRLEN(REPLACE(?targetMotifMatchCigarQ89894MF_0420627, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0420628) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((BOUND(?thisPositionOn11) && BOUND(?thisPositionOn12))) .
BIND(URI(CONCAT(STR(?this), '#MF_04206a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionQ8989445 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8989447 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ89894MF_0420640 .
?templateMotifSequenceMatchRegionQ8989445 faldo:begin ?templateMotifSequenceMatchBeginQ8989446 .
?templateMotifSequenceMatchBeginQ8989446 faldo:position ?templateMotifSequenceMatchBeginPositionQ8989441 ;
faldo:reference isoform:Q89894-1 .
?templateMotifSequenceProfileAlignmentOperationQ8989447 edam:has_input signature:MF_04206 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420651 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ89894MF_0420642 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420650 .
?targetMotifMatchRegionMatchBeginMF_0420650 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420643 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0420651 edam:has_input signature:MF_04206 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ89894MF_0420640, 1, (STRLEN(?templateMotifCigarQ89894MF_0420640) - STRLEN(REPLACE(?templateMotifCigarQ89894MF_0420640, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionQ8989441) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ89894MF_0420642, 1, (STRLEN(?targetMotifMatchCigarQ89894MF_0420642) - STRLEN(REPLACE(?targetMotifMatchCigarQ89894MF_0420642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ89894MF_0420642, 1, (STRLEN(?targetMotifMatchCigarQ89894MF_0420642) - STRLEN(REPLACE(?targetMotifMatchCigarQ89894MF_0420642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0420643) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ89894MF_0420640, 1, (STRLEN(?templateMotifCigarQ89894MF_0420640) - STRLEN(REPLACE(?templateMotifCigarQ89894MF_0420640, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionQ8989441) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ89894MF_0420642, 1, (STRLEN(?targetMotifMatchCigarQ89894MF_0420642) - STRLEN(REPLACE(?targetMotifMatchCigarQ89894MF_0420642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ89894MF_0420642, 1, (STRLEN(?targetMotifMatchCigarQ89894MF_0420642) - STRLEN(REPLACE(?targetMotifMatchCigarQ89894MF_0420642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0420643) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_04206a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionQ8989462 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8989464 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ89894MF_0420657 .
?templateMotifSequenceMatchRegionQ8989462 faldo:begin ?templateMotifSequenceMatchBeginQ8989463 .
?templateMotifSequenceMatchBeginQ8989463 faldo:position ?templateMotifSequenceMatchBeginPositionQ8989458 ;
faldo:reference isoform:Q89894-1 .
?templateMotifSequenceProfileAlignmentOperationQ8989464 edam:has_input signature:MF_04206 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420668 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ89894MF_0420659 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420667 .
?targetMotifMatchRegionMatchBeginMF_0420667 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420660 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0420668 edam:has_input signature:MF_04206 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ89894MF_0420657, 1, (STRLEN(?templateMotifCigarQ89894MF_0420657) - STRLEN(REPLACE(?templateMotifCigarQ89894MF_0420657, CONCAT('^(?:-*[^-]){', STR(((32 - ?templateMotifSequenceMatchBeginPositionQ8989458) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ89894MF_0420659, 1, (STRLEN(?targetMotifMatchCigarQ89894MF_0420659) - STRLEN(REPLACE(?targetMotifMatchCigarQ89894MF_0420659, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ89894MF_0420659, 1, (STRLEN(?targetMotifMatchCigarQ89894MF_0420659) - STRLEN(REPLACE(?targetMotifMatchCigarQ89894MF_0420659, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0420660) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_04206a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
}
"xsd:string |
