| http://purl.uniprot.org/unirules/MF_01210#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:426198 up:source unirule:MF_01210 .
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_:426230 up:source unirule:MF_01210 .
_:426231 up:source unirule:MF_01210 .
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_:426233 up:source unirule:MF_01210 .
_:426234 up:source unirule:MF_01210 .
_:426235 up:source unirule:MF_01210 .
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_:426237 up:source unirule:MF_01210 .
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_:426240 up:source unirule:MF_01210 .
_:426241 up:source unirule:MF_01210 .
_:426242 up:source unirule:MF_01210 .
_:426243 up:source unirule:MF_01210 .
_:426244 up:source unirule:MF_01210 .
_:426245 up:source unirule:MF_01210 .
_:426246 up:source unirule:MF_01210 .
_:426247 up:source unirule:MF_01210 .
_:426248 up:source unirule:MF_01210 .
_:426249 up:source unirule:MF_01210 .
_:426250 up:source unirule:MF_01210 .
_:426251 up:source unirule:MF_01210 .
_:426252 up:source unirule:MF_01210 .
_:426253 up:source unirule:MF_01210 .
_:426254 up:source unirule:MF_01210 .
_:426255 up:source unirule:MF_01210 .
_:426256 up:source unirule:MF_01210 .
_:426257 up:source unirule:MF_01210 .
_:426258 up:source unirule:MF_01210 .
_:426259 up:source unirule:MF_01210 .
_:426260 up:source unirule:MF_01210 .
_:426261 up:source unirule:MF_01210 .
_:426262 up:source unirule:MF_01210 .
_:426263 up:source unirule:MF_01210 .
_:426264 up:source unirule:MF_01210 .
_:426265 up:source unirule:MF_01210 .
_:426266 up:source unirule:MF_01210 .
_:426267 up:source unirule:MF_01210 .
_:426268 up:source unirule:MF_01210 .
_:426269 up:source unirule:MF_01210 .
_:426270 up:source unirule:MF_01210 .
_:426271 up:source unirule:MF_01210 .
_:426272 up:source unirule:MF_01210 .
_:426273 up:source unirule:MF_01210 .
_:426274 up:source unirule:MF_01210 .
_:426275 up:source unirule:MF_01210 .
_:426276 up:source unirule:MF_01210 .
_:426277 up:source unirule:MF_01210 .
_:426278 up:source unirule:MF_01210 .
_:426279 up:source unirule:MF_01210 .
_:426280 up:source unirule:MF_01210 .
_:426281 up:source unirule:MF_01210 .
_:426282 up:source unirule:MF_01210 .
_:426283 up:source unirule:MF_01210 .
_:426284 up:source unirule:MF_01210 .
_:426285 up:source unirule:MF_01210 .
_:426286 up:source unirule:MF_01210 .
_:426287 up:source unirule:MF_01210 .
_:426288 up:source unirule:MF_01210 .
_:426289 up:source unirule:MF_01210 .
_:426290 up:source unirule:MF_01210 .
_:426291 up:source unirule:MF_01210 .
_:426292 up:source unirule:MF_01210 .
_:426293 up:source unirule:MF_01210 .
_:426294 up:source unirule:MF_01210 .
_:426295 up:source unirule:MF_01210 .
_:426296 up:source unirule:MF_01210 .
_:426297 up:source unirule:MF_01210 .
_:426298 up:source unirule:MF_01210 .
_:426299 up:source unirule:MF_01210 .
_:426300 up:source unirule:MF_01210 .
_:426301 up:source unirule:MF_01210 .
_:426302 up:source unirule:MF_01210 .
_:426303 up:source unirule:MF_01210 .
_:426304 up:source unirule:MF_01210 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation13 ;
up:classifiedWith GO:0004088 ,
GO:0005524 ,
GO:0006526 ,
GO:0044205 ,
keyword:28 ,
keyword:436 ,
keyword:547 ,
keyword:55 ,
keyword:665 ,
keyword:677 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.4.16' ,
'6.3.5.5' ;
up:fullName 'Carbamoyl phosphate synthase large chain' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Carbamoyl phosphate synthetase ammonia chain' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'carB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Large subunit of the glutamine-dependent carbamoyl phosphate synthetase (CPSase). CPSase catalyzes the formation of carbamoyl phosphate from the ammonia moiety of glutamine, carbonate, and phosphate donated by ATP, constituting the first step of 2 biosynthetic pathways, one leading to arginine and/or urea and the other to pyrimidine nucleotides. The large subunit (synthetase) binds the substrates ammonia (free or transferred from glutamine from the small subunit), hydrogencarbonate and ATP and carries out an ATP-coupled ligase reaction, activating hydrogencarbonate by forming carboxy phosphate which reacts with ammonia to form carbamoyl phosphate.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:18420 ,
chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 4 Mg(2+) or Mn(2+) ions per subunit.' .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; carbamoyl phosphate from bicarbonate: step 1/1.' .
?annotation10 a up:Pathway_Annotation ;
rdfs:comment 'Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3.' .
?annotation11 a up:Subunit_Annotation ;
rdfs:comment 'Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate. Tetramer of heterodimers (alpha,beta)4.' .
?annotation12 a up:Domain_Annotation ;
rdfs:comment 'The large subunit is composed of 2 ATP-grasp domains that are involved in binding the 2 ATP molecules needed for carbamoyl phosphate synthesis. The N-terminal ATP-grasp domain (referred to as the carboxyphosphate synthetic component) catalyzes the ATP-dependent phosphorylation of hydrogencarbonate to carboxyphosphate and the subsequent nucleophilic attack by ammonia to form a carbamate intermediate. The C-terminal ATP-grasp domain (referred to as the carbamoyl phosphate synthetic component) then catalyzes the phosphorylation of carbamate with the second ATP to form the end product carbamoyl phosphate. The reactive and unstable enzyme intermediates are sequentially channeled from one active site to the next through the interior of the protein over a distance of at least 96 A.' .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the CarB family.' .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Carboxyphosphate synthetic domain' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Oligomerization domain' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Carbamoyl phosphate synthetic domain' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Allosteric domain' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:30616 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:30616 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:30616 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:30616 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:30616 .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
up:ligand ?ligand77 ;
rdf:type up:Binding_Site_Annotation .
?pfsb75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?ligand77 rdfs:subClassOf chebi:30616 .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
up:ligand ?ligand84 ;
rdf:type up:Binding_Site_Annotation .
?pfsb82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?ligand84 rdfs:subClassOf chebi:30616 .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
up:ligand ?ligand91 ;
rdf:type up:Binding_Site_Annotation .
?pfsb89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?ligand91 rdfs:subClassOf chebi:30616 .
?pfs94 up:annotation ?annotation95 .
?annotation95 faldo:begin ?pfsb96 ;
faldo:end ?pfse97 ;
up:ligand ?ligand98 ;
rdf:type up:Binding_Site_Annotation .
?pfsb96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfse97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?ligand98 rdfs:subClassOf chebi:30616 .
?pfs101 up:annotation ?annotation102 .
?annotation102 faldo:begin ?pfsb103 ;
faldo:end ?pfse104 ;
up:ligand ?ligand105 ;
rdf:type up:Binding_Site_Annotation .
?pfsb103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?pfse104 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?ligand105 rdfs:subClassOf chebi:30616 .
?pfs108 up:annotation ?annotation109 .
?annotation109 faldo:begin ?pfsb110 ;
faldo:end ?pfse111 ;
up:ligand ?ligand112 ;
rdf:type up:Binding_Site_Annotation .
?pfsb110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?pfse111 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?ligand112 rdfs:subClassOf chebi:30616 .
?pfs115 up:annotation ?annotation116 .
?annotation116 faldo:begin ?pfsb117 ;
faldo:end ?pfse118 ;
up:ligand ?ligand119 ;
rdf:type up:Binding_Site_Annotation .
?pfsb117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfse118 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?ligand119 rdfs:subClassOf chebi:30616 .
?pfs122 up:annotation ?annotation123 .
?annotation123 faldo:begin ?pfsb124 ;
faldo:end ?pfse125 ;
up:ligand ?ligand126 ;
rdf:type up:Binding_Site_Annotation .
?pfsb124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse125 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?ligand126 rdfs:subClassOf chebi:18420 .
?pfs129 up:annotation ?annotation130 .
?annotation130 faldo:begin ?pfsb131 ;
faldo:end ?pfse132 ;
up:ligand ?ligand133 ;
rdf:type up:Binding_Site_Annotation .
?pfsb131 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?pfse132 faldo:position ?thisPositionOn135 ;
rdf:type faldo:ExactPosition .
?ligand133 rdfs:subClassOf chebi:29035 .
?pfs136 up:annotation ?annotation137 .
?annotation137 faldo:begin ?pfsb138 ;
faldo:end ?pfse139 ;
up:ligand ?ligand140 ;
rdf:type up:Binding_Site_Annotation .
?pfsb138 faldo:position ?thisPositionOn141 ;
rdf:type faldo:ExactPosition .
?pfse139 faldo:position ?thisPositionOn142 ;
rdf:type faldo:ExactPosition .
?ligand140 rdfs:subClassOf chebi:30616 .
?pfs143 up:annotation ?annotation144 .
?annotation144 faldo:begin ?pfsb145 ;
faldo:end ?pfse146 ;
up:ligand ?ligand147 ;
rdf:type up:Binding_Site_Annotation .
?pfsb145 faldo:position ?thisPositionOn148 ;
rdf:type faldo:ExactPosition .
?pfse146 faldo:position ?thisPositionOn149 ;
rdf:type faldo:ExactPosition .
?ligand147 rdfs:subClassOf chebi:18420 .
?pfs150 up:annotation ?annotation151 .
?annotation151 faldo:begin ?pfsb152 ;
faldo:end ?pfse153 ;
up:ligand ?ligand154 ;
rdf:type up:Binding_Site_Annotation .
?pfsb152 faldo:position ?thisPositionOn155 ;
rdf:type faldo:ExactPosition .
?pfse153 faldo:position ?thisPositionOn156 ;
rdf:type faldo:ExactPosition .
?ligand154 rdfs:subClassOf chebi:18420 .
?pfs157 up:annotation ?annotation158 .
?annotation158 faldo:begin ?pfsb159 ;
faldo:end ?pfse160 ;
up:ligand ?ligand161 ;
rdf:type up:Binding_Site_Annotation .
?pfsb159 faldo:position ?thisPositionOn162 ;
rdf:type faldo:ExactPosition .
?pfse160 faldo:position ?thisPositionOn163 ;
rdf:type faldo:ExactPosition .
?ligand161 rdfs:subClassOf chebi:29035 .
?pfs164 up:annotation ?annotation165 .
?annotation165 faldo:begin ?pfsb166 ;
faldo:end ?pfse167 ;
up:ligand ?ligand168 ;
rdf:type up:Binding_Site_Annotation .
?pfsb166 faldo:position ?thisPositionOn169 ;
rdf:type faldo:ExactPosition .
?pfse167 faldo:position ?thisPositionOn170 ;
rdf:type faldo:ExactPosition .
?ligand168 rdfs:subClassOf chebi:29035 .
?pfs171 up:annotation ?annotation172 .
?annotation172 faldo:begin ?pfsb173 ;
faldo:end ?pfse174 ;
up:ligand ?ligand175 ;
rdf:type up:Binding_Site_Annotation .
?pfsb173 faldo:position ?thisPositionOn176 ;
rdf:type faldo:ExactPosition .
?pfse174 faldo:position ?thisPositionOn177 ;
rdf:type faldo:ExactPosition .
?ligand175 rdfs:subClassOf chebi:18420 .
?pfs178 up:annotation ?annotation179 .
?annotation179 faldo:begin ?pfsb180 ;
faldo:end ?pfse181 ;
up:ligand ?ligand182 ;
rdf:type up:Binding_Site_Annotation .
?pfsb180 faldo:position ?thisPositionOn183 ;
rdf:type faldo:ExactPosition .
?pfse181 faldo:position ?thisPositionOn184 ;
rdf:type faldo:ExactPosition .
?ligand182 rdfs:subClassOf chebi:29035 .
?pfs185 up:annotation ?annotation186 .
?annotation186 faldo:begin ?pfsb187 ;
faldo:end ?pfse188 ;
up:ligand ?ligand189 ;
rdf:type up:Binding_Site_Annotation .
?pfsb187 faldo:position ?thisPositionOn190 ;
rdf:type faldo:ExactPosition .
?pfse188 faldo:position ?thisPositionOn191 ;
rdf:type faldo:ExactPosition .
?ligand189 rdfs:subClassOf chebi:30616 .
?pfs192 up:annotation ?annotation193 .
?annotation193 faldo:begin ?pfsb194 ;
faldo:end ?pfse195 ;
up:ligand ?ligand196 ;
rdf:type up:Binding_Site_Annotation .
?pfsb194 faldo:position ?thisPositionOn197 ;
rdf:type faldo:ExactPosition .
?pfse195 faldo:position ?thisPositionOn198 ;
rdf:type faldo:ExactPosition .
?ligand196 rdfs:subClassOf chebi:30616 .
?pfs199 up:annotation ?annotation200 .
?annotation200 faldo:begin ?pfsb201 ;
faldo:end ?pfse202 ;
up:ligand ?ligand203 ;
rdf:type up:Binding_Site_Annotation .
?pfsb201 faldo:position ?thisPositionOn204 ;
rdf:type faldo:ExactPosition .
?pfse202 faldo:position ?thisPositionOn205 ;
rdf:type faldo:ExactPosition .
?ligand203 rdfs:subClassOf chebi:30616 .
?pfs206 up:annotation ?annotation207 .
?annotation207 faldo:begin ?pfsb208 ;
faldo:end ?pfse209 ;
up:ligand ?ligand210 ;
rdf:type up:Binding_Site_Annotation .
?pfsb208 faldo:position ?thisPositionOn211 ;
rdf:type faldo:ExactPosition .
?pfse209 faldo:position ?thisPositionOn212 ;
rdf:type faldo:ExactPosition .
?ligand210 rdfs:subClassOf chebi:30616 .
?pfs213 up:annotation ?annotation214 .
?annotation214 faldo:begin ?pfsb215 ;
faldo:end ?pfse216 ;
up:ligand ?ligand217 ;
rdf:type up:Binding_Site_Annotation .
?pfsb215 faldo:position ?thisPositionOn218 ;
rdf:type faldo:ExactPosition .
?pfse216 faldo:position ?thisPositionOn219 ;
rdf:type faldo:ExactPosition .
?ligand217 rdfs:subClassOf chebi:30616 .
?pfs220 up:annotation ?annotation221 .
?annotation221 faldo:begin ?pfsb222 ;
faldo:end ?pfse223 ;
up:ligand ?ligand224 ;
rdf:type up:Binding_Site_Annotation .
?pfsb222 faldo:position ?thisPositionOn225 ;
rdf:type faldo:ExactPosition .
?pfse223 faldo:position ?thisPositionOn226 ;
rdf:type faldo:ExactPosition .
?ligand224 rdfs:subClassOf chebi:30616 .
?pfs227 up:annotation ?annotation228 .
?annotation228 faldo:begin ?pfsb229 ;
faldo:end ?pfse230 ;
up:ligand ?ligand231 ;
rdf:type up:Binding_Site_Annotation .
?pfsb229 faldo:position ?thisPositionOn232 ;
rdf:type faldo:ExactPosition .
?pfse230 faldo:position ?thisPositionOn233 ;
rdf:type faldo:ExactPosition .
?ligand231 rdfs:subClassOf chebi:30616 .
?pfs234 up:annotation ?annotation235 .
?annotation235 faldo:begin ?pfsb236 ;
faldo:end ?pfse237 ;
up:ligand ?ligand238 ;
rdf:type up:Binding_Site_Annotation .
?pfsb236 faldo:position ?thisPositionOn239 ;
rdf:type faldo:ExactPosition .
?pfse237 faldo:position ?thisPositionOn240 ;
rdf:type faldo:ExactPosition .
?ligand238 rdfs:subClassOf chebi:30616 .
?pfs241 up:annotation ?annotation242 .
?annotation242 faldo:begin ?pfsb243 ;
faldo:end ?pfse244 ;
up:ligand ?ligand245 ;
rdf:type up:Binding_Site_Annotation .
?pfsb243 faldo:position ?thisPositionOn246 ;
rdf:type faldo:ExactPosition .
?pfse244 faldo:position ?thisPositionOn247 ;
rdf:type faldo:ExactPosition .
?ligand245 rdfs:subClassOf chebi:18420 .
?pfs248 up:annotation ?annotation249 .
?annotation249 faldo:begin ?pfsb250 ;
faldo:end ?pfse251 ;
up:ligand ?ligand252 ;
rdf:type up:Binding_Site_Annotation .
?pfsb250 faldo:position ?thisPositionOn253 ;
rdf:type faldo:ExactPosition .
?pfse251 faldo:position ?thisPositionOn254 ;
rdf:type faldo:ExactPosition .
?ligand252 rdfs:subClassOf chebi:29035 .
?pfs255 up:annotation ?annotation256 .
?annotation256 faldo:begin ?pfsb257 ;
faldo:end ?pfse258 ;
up:ligand ?ligand259 ;
rdf:type up:Binding_Site_Annotation .
?pfsb257 faldo:position ?thisPositionOn260 ;
rdf:type faldo:ExactPosition .
?pfse258 faldo:position ?thisPositionOn261 ;
rdf:type faldo:ExactPosition .
?ligand259 rdfs:subClassOf chebi:30616 .
?pfs262 up:annotation ?annotation263 .
?annotation263 faldo:begin ?pfsb264 ;
faldo:end ?pfse265 ;
up:ligand ?ligand266 ;
rdf:type up:Binding_Site_Annotation .
?pfsb264 faldo:position ?thisPositionOn267 ;
rdf:type faldo:ExactPosition .
?pfse265 faldo:position ?thisPositionOn268 ;
rdf:type faldo:ExactPosition .
?ligand266 rdfs:subClassOf chebi:18420 .
?pfs269 up:annotation ?annotation270 .
?annotation270 faldo:begin ?pfsb271 ;
faldo:end ?pfse272 ;
up:ligand ?ligand273 ;
rdf:type up:Binding_Site_Annotation .
?pfsb271 faldo:position ?thisPositionOn274 ;
rdf:type faldo:ExactPosition .
?pfse272 faldo:position ?thisPositionOn275 ;
rdf:type faldo:ExactPosition .
?ligand273 rdfs:subClassOf chebi:18420 .
?pfs276 up:annotation ?annotation277 .
?annotation277 faldo:begin ?pfsb278 ;
faldo:end ?pfse279 ;
up:ligand ?ligand280 ;
rdf:type up:Binding_Site_Annotation .
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rdf:subject ?pfs545 ;
rdf:predicate up:annotation ;
rdf:object ?annotation546 .
_:426484 a rdf:Statement ;
up:source unirule:MF_01210 ;
rdf:subject ?pfs552 ;
rdf:predicate up:annotation ;
rdf:object ?annotation553 .
_:426485 a rdf:Statement ;
up:attribution _:426299 ;
rdf:subject ?pfs552 ;
rdf:predicate up:annotation ;
rdf:object ?annotation553 .
_:426486 a rdf:Statement ;
up:source unirule:MF_01210 ;
rdf:subject ?pfs559 ;
rdf:predicate up:annotation ;
rdf:object ?annotation560 .
_:426487 a rdf:Statement ;
up:attribution _:426300 ;
rdf:subject ?pfs559 ;
rdf:predicate up:annotation ;
rdf:object ?annotation560 .
_:426488 a rdf:Statement ;
up:source unirule:MF_01210 ;
rdf:subject ?pfs566 ;
rdf:predicate up:annotation ;
rdf:object ?annotation567 .
_:426489 a rdf:Statement ;
up:attribution _:426301 ;
rdf:subject ?pfs566 ;
rdf:predicate up:annotation ;
rdf:object ?annotation567 .
_:426490 a rdf:Statement ;
up:source unirule:MF_01210 ;
rdf:subject ?pfs573 ;
rdf:predicate up:annotation ;
rdf:object ?annotation574 .
_:426491 a rdf:Statement ;
up:attribution _:426302 ;
rdf:subject ?pfs573 ;
rdf:predicate up:annotation ;
rdf:object ?annotation574 .
_:426492 a rdf:Statement ;
up:source unirule:MF_01210 ;
rdf:subject ?pfs580 ;
rdf:predicate up:annotation ;
rdf:object ?annotation581 .
_:426493 a rdf:Statement ;
up:attribution _:426303 ;
rdf:subject ?pfs580 ;
rdf:predicate up:annotation ;
rdf:object ?annotation581 .
_:426494 a rdf:Statement ;
up:source unirule:MF_01210 ;
rdf:subject ?pfs587 ;
rdf:predicate up:annotation ;
rdf:object ?annotation588 .
_:426495 a rdf:Statement ;
up:attribution _:426304 ;
rdf:subject ?pfs587 ;
rdf:predicate up:annotation ;
rdf:object ?annotation588 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01210
#Rule MF_01210 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-11-05
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01210_B .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01210_A .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_01210a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a13')) AS ?annotation13) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch598 faldo:location ?templateMotifSequenceMatchRegionP00968599 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968601 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B594 .
?templateMotifSequenceMatchRegionP00968599 faldo:begin ?templateMotifSequenceMatchBeginP00968600 .
?templateMotifSequenceMatchBeginP00968600 faldo:position ?templateMotifSequenceMatchBeginPositionP00968595 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968601 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch602 faldo:location ?targetMotifMatchRegionMatch603 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B605 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B596 .
?targetMotifMatchRegionMatch603 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B604 .
?targetMotifMatchRegionMatchBeginMF_01210_B604 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B597 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B605 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(1 AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B594, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B594) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B594, CONCAT('^(?:-*[^-]){', STR(((403 - ?templateMotifSequenceMatchBeginPositionP00968595) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1606) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B596, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B596) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B596, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1606), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B596, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B596) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B596, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1606), '}'), '')))), '[^-]', ''))) AS ?step2607) .
BIND(((?step2607 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B597) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t608) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch613 faldo:location ?templateMotifSequenceMatchRegionP00968614 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968616 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B609 .
?templateMotifSequenceMatchRegionP00968614 faldo:begin ?templateMotifSequenceMatchBeginP00968615 .
?templateMotifSequenceMatchBeginP00968615 faldo:position ?templateMotifSequenceMatchBeginPositionP00968610 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968616 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch617 faldo:location ?targetMotifMatchRegionMatch618 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B620 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B611 .
?targetMotifMatchRegionMatch618 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B619 .
?targetMotifMatchRegionMatchBeginMF_01210_B619 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B612 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B620 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B609, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B609) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B609, CONCAT('^(?:-*[^-]){', STR(((404 - ?templateMotifSequenceMatchBeginPositionP00968610) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1621) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B611, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B611) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B611, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1621), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B611, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B611) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B611, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1621), '}'), '')))), '[^-]', ''))) AS ?step2622) .
BIND(((?step2622 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B612) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B609, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B609) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B609, CONCAT('^(?:-*[^-]){', STR(((553 - ?templateMotifSequenceMatchBeginPositionP00968610) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1623) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B611, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B611) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B611, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1623), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B611, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B611) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B611, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1623), '}'), '')))), '[^-]', ''))) AS ?step2624) .
BIND(((?step2624 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B612) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t625) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch630 faldo:location ?templateMotifSequenceMatchRegionP00968631 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968633 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B626 .
?templateMotifSequenceMatchRegionP00968631 faldo:begin ?templateMotifSequenceMatchBeginP00968632 .
?templateMotifSequenceMatchBeginP00968632 faldo:position ?templateMotifSequenceMatchBeginPositionP00968627 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968633 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch634 faldo:location ?targetMotifMatchRegionMatch635 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B637 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B628 .
?targetMotifMatchRegionMatch635 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B636 .
?targetMotifMatchRegionMatchBeginMF_01210_B636 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B629 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B637 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B626, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B626) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B626, CONCAT('^(?:-*[^-]){', STR(((554 - ?templateMotifSequenceMatchBeginPositionP00968627) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1638) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B628, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B628) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B628, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1638), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B628, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B628) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B628, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1638), '}'), '')))), '[^-]', ''))) AS ?step2639) .
BIND(((?step2639 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B629) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B626, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B626) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B626, CONCAT('^(?:-*[^-]){', STR(((936 - ?templateMotifSequenceMatchBeginPositionP00968627) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1640) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B628, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B628) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B628, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1640), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B628, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B628) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B628, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1640), '}'), '')))), '[^-]', ''))) AS ?step2641) .
BIND(((?step2641 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B629) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t642) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch647 faldo:location ?templateMotifSequenceMatchRegionP00968648 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968650 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B643 .
?templateMotifSequenceMatchRegionP00968648 faldo:begin ?templateMotifSequenceMatchBeginP00968649 .
?templateMotifSequenceMatchBeginP00968649 faldo:position ?templateMotifSequenceMatchBeginPositionP00968644 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968650 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch651 faldo:location ?targetMotifMatchRegionMatch652 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B654 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B645 .
?targetMotifMatchRegionMatch652 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B653 .
?targetMotifMatchRegionMatchBeginMF_01210_B653 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B646 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B654 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B643, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B643) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B643, CONCAT('^(?:-*[^-]){', STR(((937 - ?templateMotifSequenceMatchBeginPositionP00968644) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1655) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B645, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B645) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B645, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1655), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B645, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B645) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B645, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1655), '}'), '')))), '[^-]', ''))) AS ?step2656) .
BIND(((?step2656 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B646) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t657) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch662 faldo:location ?templateMotifSequenceMatchRegionP00968663 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968665 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B658 .
?templateMotifSequenceMatchRegionP00968663 faldo:begin ?templateMotifSequenceMatchBeginP00968664 .
?templateMotifSequenceMatchBeginP00968664 faldo:position ?templateMotifSequenceMatchBeginPositionP00968659 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968665 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch666 faldo:location ?targetMotifMatchRegionMatch667 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B669 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B660 .
?targetMotifMatchRegionMatch667 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B668 .
?targetMotifMatchRegionMatchBeginMF_01210_B668 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B661 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B669 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B658, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B658) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B658, CONCAT('^(?:-*[^-]){', STR(((754 - ?templateMotifSequenceMatchBeginPositionP00968659) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1670) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B660, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B660) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B660, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1670), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B660, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B660) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B660, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1670), '}'), '')))), '[^-]', ''))) AS ?step2671) .
BIND(((?step2671 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B661) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t672) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER (BOUND(?thisPositionOn43)) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch677 faldo:location ?templateMotifSequenceMatchRegionP00968678 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968680 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B673 .
?templateMotifSequenceMatchRegionP00968678 faldo:begin ?templateMotifSequenceMatchBeginP00968679 .
?templateMotifSequenceMatchBeginP00968679 faldo:position ?templateMotifSequenceMatchBeginPositionP00968674 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968680 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch681 faldo:location ?targetMotifMatchRegionMatch682 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B684 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B675 .
?targetMotifMatchRegionMatch682 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B683 .
?targetMotifMatchRegionMatchBeginMF_01210_B683 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B676 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B684 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B673, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B673) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B673, CONCAT('^(?:-*[^-]){', STR(((129 - ?templateMotifSequenceMatchBeginPositionP00968674) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1685) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B675, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B675) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B675, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1685), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B675, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B675) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B675, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1685), '}'), '')))), '[^-]', ''))) AS ?step2686) .
BIND(((?step2686 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B676) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t687) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch692 faldo:location ?templateMotifSequenceMatchRegionP00968693 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968695 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B688 .
?templateMotifSequenceMatchRegionP00968693 faldo:begin ?templateMotifSequenceMatchBeginP00968694 .
?templateMotifSequenceMatchBeginP00968694 faldo:position ?templateMotifSequenceMatchBeginPositionP00968689 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968695 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch696 faldo:location ?targetMotifMatchRegionMatch697 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B699 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B690 .
?targetMotifMatchRegionMatch697 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B698 .
?targetMotifMatchRegionMatchBeginMF_01210_B698 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B691 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B699 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B688, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B688) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B688, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP00968689) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1700) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B690, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B690) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1700), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B690, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B690) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1700), '}'), '')))), '[^-]', ''))) AS ?step2701) .
BIND(((?step2701 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B691) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t702) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch707 faldo:location ?templateMotifSequenceMatchRegionP00968708 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968710 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B703 .
?templateMotifSequenceMatchRegionP00968708 faldo:begin ?templateMotifSequenceMatchBeginP00968709 .
?templateMotifSequenceMatchBeginP00968709 faldo:position ?templateMotifSequenceMatchBeginPositionP00968704 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968710 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch711 faldo:location ?targetMotifMatchRegionMatch712 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B714 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B705 .
?targetMotifMatchRegionMatch712 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B713 .
?targetMotifMatchRegionMatchBeginMF_01210_B713 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B706 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B714 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B703, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B703) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B703, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionP00968704) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1715) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B705, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B705) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B705, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1715), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B705, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B705) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B705, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1715), '}'), '')))), '[^-]', ''))) AS ?step2716) .
BIND(((?step2716 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B706) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t717) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch722 faldo:location ?templateMotifSequenceMatchRegionP00968723 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968725 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B718 .
?templateMotifSequenceMatchRegionP00968723 faldo:begin ?templateMotifSequenceMatchBeginP00968724 .
?templateMotifSequenceMatchBeginP00968724 faldo:position ?templateMotifSequenceMatchBeginPositionP00968719 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968725 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch726 faldo:location ?targetMotifMatchRegionMatch727 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B729 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B720 .
?targetMotifMatchRegionMatch727 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B728 .
?targetMotifMatchRegionMatchBeginMF_01210_B728 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B721 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B729 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B718, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B718) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B718, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionP00968719) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1730) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B720, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B720) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B720, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1730), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B720, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B720) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B720, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1730), '}'), '')))), '[^-]', ''))) AS ?step2731) .
BIND(((?step2731 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B721) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t732) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch737 faldo:location ?templateMotifSequenceMatchRegionP00968738 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968740 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B733 .
?templateMotifSequenceMatchRegionP00968738 faldo:begin ?templateMotifSequenceMatchBeginP00968739 .
?templateMotifSequenceMatchBeginP00968739 faldo:position ?templateMotifSequenceMatchBeginPositionP00968734 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968740 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch741 faldo:location ?targetMotifMatchRegionMatch742 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B744 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B735 .
?targetMotifMatchRegionMatch742 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B743 .
?targetMotifMatchRegionMatchBeginMF_01210_B743 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B736 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B744 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B733, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B733) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B733, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionP00968734) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1745) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B735, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B735) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1745), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B735, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B735) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B735, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1745), '}'), '')))), '[^-]', ''))) AS ?step2746) .
BIND(((?step2746 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B736) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t747) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) .
FILTER (REGEX('[EKQR]', SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch752 faldo:location ?templateMotifSequenceMatchRegionP00968753 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968755 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B748 .
?templateMotifSequenceMatchRegionP00968753 faldo:begin ?templateMotifSequenceMatchBeginP00968754 .
?templateMotifSequenceMatchBeginP00968754 faldo:position ?templateMotifSequenceMatchBeginPositionP00968749 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968755 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch756 faldo:location ?targetMotifMatchRegionMatch757 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B759 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B750 .
?targetMotifMatchRegionMatch757 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B758 .
?targetMotifMatchRegionMatchBeginMF_01210_B758 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B751 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B759 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B748, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B748) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B748, CONCAT('^(?:-*[^-]){', STR(((210 - ?templateMotifSequenceMatchBeginPositionP00968749) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1760) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B750, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B750) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B750, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1760), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B750, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B750) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B750, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1760), '}'), '')))), '[^-]', ''))) AS ?step2761) .
BIND(((?step2761 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B751) - 1) AS ?thisPositionOn85) .
BIND(?thisPositionOn85 AS ?thisPositionOn86) .
BIND(?this AS ?pfs1t762) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) .
FILTER (REGEX('[LIV]', SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch767 faldo:location ?templateMotifSequenceMatchRegionP00968768 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968770 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B763 .
?templateMotifSequenceMatchRegionP00968768 faldo:begin ?templateMotifSequenceMatchBeginP00968769 .
?templateMotifSequenceMatchBeginP00968769 faldo:position ?templateMotifSequenceMatchBeginPositionP00968764 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968770 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch771 faldo:location ?targetMotifMatchRegionMatch772 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B774 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B765 .
?targetMotifMatchRegionMatch772 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B773 .
?targetMotifMatchRegionMatchBeginMF_01210_B773 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B766 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B774 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B763, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B763) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B763, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionP00968764) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1775) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B765, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B765) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1775), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B765, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B765) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B765, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1775), '}'), '')))), '[^-]', ''))) AS ?step2776) .
BIND(((?step2776 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B766) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs1t777) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch782 faldo:location ?templateMotifSequenceMatchRegionP00968783 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968785 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B778 .
?templateMotifSequenceMatchRegionP00968783 faldo:begin ?templateMotifSequenceMatchBeginP00968784 .
?templateMotifSequenceMatchBeginP00968784 faldo:position ?templateMotifSequenceMatchBeginPositionP00968779 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968785 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch786 faldo:location ?targetMotifMatchRegionMatch787 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B789 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B780 .
?targetMotifMatchRegionMatch787 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B788 .
?targetMotifMatchRegionMatchBeginMF_01210_B788 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B781 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B789 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B778, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B778) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B778, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionP00968779) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1790) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B780, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B780) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B780, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1790), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B780, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B780) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B780, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1790), '}'), '')))), '[^-]', ''))) AS ?step2791) .
BIND(((?step2791 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B781) - 1) AS ?thisPositionOn99) .
BIND(?thisPositionOn99 AS ?thisPositionOn100) .
BIND(?this AS ?pfs1t792) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a95')) AS ?annotation95) .
BIND(?this AS ?pfs94) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch797 faldo:location ?templateMotifSequenceMatchRegionP00968798 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968800 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B793 .
?templateMotifSequenceMatchRegionP00968798 faldo:begin ?templateMotifSequenceMatchBeginP00968799 .
?templateMotifSequenceMatchBeginP00968799 faldo:position ?templateMotifSequenceMatchBeginPositionP00968794 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968800 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch801 faldo:location ?targetMotifMatchRegionMatch802 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B804 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B795 .
?targetMotifMatchRegionMatch802 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B803 .
?targetMotifMatchRegionMatchBeginMF_01210_B803 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B796 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B804 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B793, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B793) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B793, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionP00968794) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1805) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B795, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B795) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B795, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1805), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B795, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B795) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B795, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1805), '}'), '')))), '[^-]', ''))) AS ?step2806) .
BIND(((?step2806 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B796) - 1) AS ?thisPositionOn106) .
BIND(?thisPositionOn106 AS ?thisPositionOn107) .
BIND(?this AS ?pfs1t807) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse104) .
FILTER (REGEX('[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn106, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a102')) AS ?annotation102) .
BIND(?this AS ?pfs101) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch812 faldo:location ?templateMotifSequenceMatchRegionP00968813 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968815 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B808 .
?templateMotifSequenceMatchRegionP00968813 faldo:begin ?templateMotifSequenceMatchBeginP00968814 .
?templateMotifSequenceMatchBeginP00968814 faldo:position ?templateMotifSequenceMatchBeginPositionP00968809 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968815 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch816 faldo:location ?targetMotifMatchRegionMatch817 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B819 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B810 .
?targetMotifMatchRegionMatch817 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B818 .
?targetMotifMatchRegionMatchBeginMF_01210_B818 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B811 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B819 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B808, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B808) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B808, CONCAT('^(?:-*[^-]){', STR(((243 - ?templateMotifSequenceMatchBeginPositionP00968809) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1820) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B810, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B810) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B810, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1820), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B810, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B810) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B810, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1820), '}'), '')))), '[^-]', ''))) AS ?step2821) .
BIND(((?step2821 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B811) - 1) AS ?thisPositionOn113) .
BIND(?thisPositionOn113 AS ?thisPositionOn114) .
BIND(?this AS ?pfs1t822) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse111) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a109')) AS ?annotation109) .
BIND(?this AS ?pfs108) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch827 faldo:location ?templateMotifSequenceMatchRegionP00968828 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968830 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B823 .
?templateMotifSequenceMatchRegionP00968828 faldo:begin ?templateMotifSequenceMatchBeginP00968829 .
?templateMotifSequenceMatchBeginP00968829 faldo:position ?templateMotifSequenceMatchBeginPositionP00968824 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968830 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch831 faldo:location ?targetMotifMatchRegionMatch832 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B834 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B825 .
?targetMotifMatchRegionMatch832 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B833 .
?targetMotifMatchRegionMatchBeginMF_01210_B833 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B826 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B834 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B823, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B823) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B823, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionP00968824) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1835) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B825, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B825) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B825, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1835), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B825, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B825) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B825, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1835), '}'), '')))), '[^-]', ''))) AS ?step2836) .
BIND(((?step2836 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B826) - 1) AS ?thisPositionOn120) .
BIND(?thisPositionOn120 AS ?thisPositionOn121) .
BIND(?this AS ?pfs1t837) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse118) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a116')) AS ?annotation116) .
BIND(?this AS ?pfs115) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch842 faldo:location ?templateMotifSequenceMatchRegionP00968843 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968845 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B838 .
?templateMotifSequenceMatchRegionP00968843 faldo:begin ?templateMotifSequenceMatchBeginP00968844 .
?templateMotifSequenceMatchBeginP00968844 faldo:position ?templateMotifSequenceMatchBeginPositionP00968839 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968845 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch846 faldo:location ?targetMotifMatchRegionMatch847 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B849 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B840 .
?targetMotifMatchRegionMatch847 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B848 .
?targetMotifMatchRegionMatchBeginMF_01210_B848 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B841 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B849 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B838, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B838) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B838, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionP00968839) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1850) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B840, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B840) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B840, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1850), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B840, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B840) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B840, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1850), '}'), '')))), '[^-]', ''))) AS ?step2851) .
BIND(((?step2851 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B841) - 1) AS ?thisPositionOn127) .
BIND(?thisPositionOn127 AS ?thisPositionOn128) .
BIND(?this AS ?pfs1t852) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse125) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a123')) AS ?annotation123) .
BIND(?this AS ?pfs122) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch857 faldo:location ?templateMotifSequenceMatchRegionP00968858 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968860 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B853 .
?templateMotifSequenceMatchRegionP00968858 faldo:begin ?templateMotifSequenceMatchBeginP00968859 .
?templateMotifSequenceMatchBeginP00968859 faldo:position ?templateMotifSequenceMatchBeginPositionP00968854 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968860 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch861 faldo:location ?targetMotifMatchRegionMatch862 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B864 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B855 .
?targetMotifMatchRegionMatch862 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B863 .
?targetMotifMatchRegionMatchBeginMF_01210_B863 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B856 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B864 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B853, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B853) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B853, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionP00968854) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1865) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B855, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B855) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B855, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1865), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B855, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B855) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B855, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1865), '}'), '')))), '[^-]', ''))) AS ?step2866) .
BIND(((?step2866 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B856) - 1) AS ?thisPositionOn134) .
BIND(?thisPositionOn134 AS ?thisPositionOn135) .
BIND(?this AS ?pfs1t867) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfsb131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfse132) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn134, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a130')) AS ?annotation130) .
BIND(?this AS ?pfs129) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch872 faldo:location ?templateMotifSequenceMatchRegionP00968873 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968875 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B868 .
?templateMotifSequenceMatchRegionP00968873 faldo:begin ?templateMotifSequenceMatchBeginP00968874 .
?templateMotifSequenceMatchBeginP00968874 faldo:position ?templateMotifSequenceMatchBeginPositionP00968869 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968875 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch876 faldo:location ?targetMotifMatchRegionMatch877 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B879 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B870 .
?targetMotifMatchRegionMatch877 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B878 .
?targetMotifMatchRegionMatchBeginMF_01210_B878 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B871 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B879 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B868, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B868) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B868, CONCAT('^(?:-*[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionP00968869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1880) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B870, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B870) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B870, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1880), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B870, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B870) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B870, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1880), '}'), '')))), '[^-]', ''))) AS ?step2881) .
BIND(((?step2881 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B871) - 1) AS ?thisPositionOn141) .
BIND(?thisPositionOn141 AS ?thisPositionOn142) .
BIND(?this AS ?pfs1t882) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn141))) AS ?pfsb138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn142))) AS ?pfse139) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn141, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a137')) AS ?annotation137) .
BIND(?this AS ?pfs136) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch887 faldo:location ?templateMotifSequenceMatchRegionP00968888 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968890 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B883 .
?templateMotifSequenceMatchRegionP00968888 faldo:begin ?templateMotifSequenceMatchBeginP00968889 .
?templateMotifSequenceMatchBeginP00968889 faldo:position ?templateMotifSequenceMatchBeginPositionP00968884 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968890 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch891 faldo:location ?targetMotifMatchRegionMatch892 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B894 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B885 .
?targetMotifMatchRegionMatch892 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B893 .
?targetMotifMatchRegionMatchBeginMF_01210_B893 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B886 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B894 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B883, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B883) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B883, CONCAT('^(?:-*[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionP00968884) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1895) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B885, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B885) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1895), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B885, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B885) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1895), '}'), '')))), '[^-]', ''))) AS ?step2896) .
BIND(((?step2896 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B886) - 1) AS ?thisPositionOn148) .
BIND(?thisPositionOn148 AS ?thisPositionOn149) .
BIND(?this AS ?pfs1t897) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn148))) AS ?pfsb145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn149))) AS ?pfse146) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn148, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a144')) AS ?annotation144) .
BIND(?this AS ?pfs143) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch902 faldo:location ?templateMotifSequenceMatchRegionP00968903 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968905 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B898 .
?templateMotifSequenceMatchRegionP00968903 faldo:begin ?templateMotifSequenceMatchBeginP00968904 .
?templateMotifSequenceMatchBeginP00968904 faldo:position ?templateMotifSequenceMatchBeginPositionP00968899 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968905 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch906 faldo:location ?targetMotifMatchRegionMatch907 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B909 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B900 .
?targetMotifMatchRegionMatch907 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B908 .
?targetMotifMatchRegionMatchBeginMF_01210_B908 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B901 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B909 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B898, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B898) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B898, CONCAT('^(?:-*[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionP00968899) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1910) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B900, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B900) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B900, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1910), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B900, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B900) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B900, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1910), '}'), '')))), '[^-]', ''))) AS ?step2911) .
BIND(((?step2911 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B901) - 1) AS ?thisPositionOn155) .
BIND(?thisPositionOn155 AS ?thisPositionOn156) .
BIND(?this AS ?pfs1t912) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn155))) AS ?pfsb152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn156))) AS ?pfse153) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn155, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a151')) AS ?annotation151) .
BIND(?this AS ?pfs150) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch917 faldo:location ?templateMotifSequenceMatchRegionP00968918 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968920 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B913 .
?templateMotifSequenceMatchRegionP00968918 faldo:begin ?templateMotifSequenceMatchBeginP00968919 .
?templateMotifSequenceMatchBeginP00968919 faldo:position ?templateMotifSequenceMatchBeginPositionP00968914 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968920 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch921 faldo:location ?targetMotifMatchRegionMatch922 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B924 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B915 .
?targetMotifMatchRegionMatch922 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B923 .
?targetMotifMatchRegionMatchBeginMF_01210_B923 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B916 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B924 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B913, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B913) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B913, CONCAT('^(?:-*[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionP00968914) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1925) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B915, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B915) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B915, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1925), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B915, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B915) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B915, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1925), '}'), '')))), '[^-]', ''))) AS ?step2926) .
BIND(((?step2926 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B916) - 1) AS ?thisPositionOn162) .
BIND(?thisPositionOn162 AS ?thisPositionOn163) .
BIND(?this AS ?pfs1t927) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn162))) AS ?pfsb159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn163))) AS ?pfse160) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn162, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a158')) AS ?annotation158) .
BIND(?this AS ?pfs157) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch932 faldo:location ?templateMotifSequenceMatchRegionP00968933 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968935 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B928 .
?templateMotifSequenceMatchRegionP00968933 faldo:begin ?templateMotifSequenceMatchBeginP00968934 .
?templateMotifSequenceMatchBeginP00968934 faldo:position ?templateMotifSequenceMatchBeginPositionP00968929 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968935 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch936 faldo:location ?targetMotifMatchRegionMatch937 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B939 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B930 .
?targetMotifMatchRegionMatch937 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B938 .
?targetMotifMatchRegionMatchBeginMF_01210_B938 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B931 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B939 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B928, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B928) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B928, CONCAT('^(?:-*[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionP00968929) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1940) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B930, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B930) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B930, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1940), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B930, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B930) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B930, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1940), '}'), '')))), '[^-]', ''))) AS ?step2941) .
BIND(((?step2941 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B931) - 1) AS ?thisPositionOn169) .
BIND(?thisPositionOn169 AS ?thisPositionOn170) .
BIND(?this AS ?pfs1t942) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn169))) AS ?pfsb166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn170))) AS ?pfse167) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn169, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a165')) AS ?annotation165) .
BIND(?this AS ?pfs164) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch947 faldo:location ?templateMotifSequenceMatchRegionP00968948 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968950 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B943 .
?templateMotifSequenceMatchRegionP00968948 faldo:begin ?templateMotifSequenceMatchBeginP00968949 .
?templateMotifSequenceMatchBeginP00968949 faldo:position ?templateMotifSequenceMatchBeginPositionP00968944 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968950 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch951 faldo:location ?targetMotifMatchRegionMatch952 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B954 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B945 .
?targetMotifMatchRegionMatch952 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B953 .
?targetMotifMatchRegionMatchBeginMF_01210_B953 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B946 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B954 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B943, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B943) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B943, CONCAT('^(?:-*[^-]){', STR(((301 - ?templateMotifSequenceMatchBeginPositionP00968944) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1955) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B945, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B945) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B945, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1955), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B945, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B945) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B945, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1955), '}'), '')))), '[^-]', ''))) AS ?step2956) .
BIND(((?step2956 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B946) - 1) AS ?thisPositionOn176) .
BIND(?thisPositionOn176 AS ?thisPositionOn177) .
BIND(?this AS ?pfs1t957) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn176))) AS ?pfsb173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn177))) AS ?pfse174) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn176, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a172')) AS ?annotation172) .
BIND(?this AS ?pfs171) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch962 faldo:location ?templateMotifSequenceMatchRegionP00968963 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968965 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B958 .
?templateMotifSequenceMatchRegionP00968963 faldo:begin ?templateMotifSequenceMatchBeginP00968964 .
?templateMotifSequenceMatchBeginP00968964 faldo:position ?templateMotifSequenceMatchBeginPositionP00968959 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968965 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch966 faldo:location ?targetMotifMatchRegionMatch967 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B969 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B960 .
?targetMotifMatchRegionMatch967 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B968 .
?targetMotifMatchRegionMatchBeginMF_01210_B968 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B961 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B969 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B958, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B958) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B958, CONCAT('^(?:-*[^-]){', STR(((301 - ?templateMotifSequenceMatchBeginPositionP00968959) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1970) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B960, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B960) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B960, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1970), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B960, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B960) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B960, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1970), '}'), '')))), '[^-]', ''))) AS ?step2971) .
BIND(((?step2971 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B961) - 1) AS ?thisPositionOn183) .
BIND(?thisPositionOn183 AS ?thisPositionOn184) .
BIND(?this AS ?pfs1t972) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn183))) AS ?pfsb180) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn184))) AS ?pfse181) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn183, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a179')) AS ?annotation179) .
BIND(?this AS ?pfs178) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch977 faldo:location ?templateMotifSequenceMatchRegionP00968978 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968980 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B973 .
?templateMotifSequenceMatchRegionP00968978 faldo:begin ?templateMotifSequenceMatchBeginP00968979 .
?templateMotifSequenceMatchBeginP00968979 faldo:position ?templateMotifSequenceMatchBeginPositionP00968974 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968980 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch981 faldo:location ?targetMotifMatchRegionMatch982 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B984 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B975 .
?targetMotifMatchRegionMatch982 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B983 .
?targetMotifMatchRegionMatchBeginMF_01210_B983 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B976 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B984 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B973, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B973) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B973, CONCAT('^(?:-*[^-]){', STR(((715 - ?templateMotifSequenceMatchBeginPositionP00968974) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1985) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B975, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B975) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1985), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B975, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B975) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1985), '}'), '')))), '[^-]', ''))) AS ?step2986) .
BIND(((?step2986 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B976) - 1) AS ?thisPositionOn190) .
BIND(?thisPositionOn190 AS ?thisPositionOn191) .
BIND(?this AS ?pfs1t987) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn190))) AS ?pfsb187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn191))) AS ?pfse188) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn190, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a186')) AS ?annotation186) .
BIND(?this AS ?pfs185) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch992 faldo:location ?templateMotifSequenceMatchRegionP00968993 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00968995 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B988 .
?templateMotifSequenceMatchRegionP00968993 faldo:begin ?templateMotifSequenceMatchBeginP00968994 .
?templateMotifSequenceMatchBeginP00968994 faldo:position ?templateMotifSequenceMatchBeginPositionP00968989 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP00968995 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch996 faldo:location ?targetMotifMatchRegionMatch997 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B999 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B990 .
?targetMotifMatchRegionMatch997 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B998 .
?targetMotifMatchRegionMatchBeginMF_01210_B998 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B991 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B999 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B988, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B988) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B988, CONCAT('^(?:-*[^-]){', STR(((756 - ?templateMotifSequenceMatchBeginPositionP00968989) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11000) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B990, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B990) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B990, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11000), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B990, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B990) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B990, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11000), '}'), '')))), '[^-]', ''))) AS ?step21001) .
BIND(((?step21001 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B991) - 1) AS ?thisPositionOn197) .
BIND(?thisPositionOn197 AS ?thisPositionOn198) .
BIND(?this AS ?pfs1t1002) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn197))) AS ?pfsb194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn198))) AS ?pfse195) .
FILTER (REGEX('[LIV]', SUBSTR(?thisSequenceValue, ?thisPositionOn197, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a193')) AS ?annotation193) .
BIND(?this AS ?pfs192) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1007 faldo:location ?templateMotifSequenceMatchRegionP009681008 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681010 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1003 .
?templateMotifSequenceMatchRegionP009681008 faldo:begin ?templateMotifSequenceMatchBeginP009681009 .
?templateMotifSequenceMatchBeginP009681009 faldo:position ?templateMotifSequenceMatchBeginPositionP009681004 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681010 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1011 faldo:location ?targetMotifMatchRegionMatch1012 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1014 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1005 .
?targetMotifMatchRegionMatch1012 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1013 .
?targetMotifMatchRegionMatchBeginMF_01210_B1013 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1006 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1014 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1003, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1003) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1003, CONCAT('^(?:-*[^-]){', STR(((761 - ?templateMotifSequenceMatchBeginPositionP009681004) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11015) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1005, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1005) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1005, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11015), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1005, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1005) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1005, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11015), '}'), '')))), '[^-]', ''))) AS ?step21016) .
BIND(((?step21016 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1006) - 1) AS ?thisPositionOn204) .
BIND(?thisPositionOn204 AS ?thisPositionOn205) .
BIND(?this AS ?pfs1t1017) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn204))) AS ?pfsb201) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn205))) AS ?pfse202) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn204, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a200')) AS ?annotation200) .
BIND(?this AS ?pfs199) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1022 faldo:location ?templateMotifSequenceMatchRegionP009681023 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681025 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1018 .
?templateMotifSequenceMatchRegionP009681023 faldo:begin ?templateMotifSequenceMatchBeginP009681024 .
?templateMotifSequenceMatchBeginP009681024 faldo:position ?templateMotifSequenceMatchBeginPositionP009681019 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681025 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1026 faldo:location ?targetMotifMatchRegionMatch1027 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1029 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1020 .
?targetMotifMatchRegionMatch1027 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1028 .
?targetMotifMatchRegionMatchBeginMF_01210_B1028 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1021 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1029 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1018, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1018) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1018, CONCAT('^(?:-*[^-]){', STR(((786 - ?templateMotifSequenceMatchBeginPositionP009681019) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11030) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1020, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1020) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1020, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11030), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1020, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1020) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1020, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11030), '}'), '')))), '[^-]', ''))) AS ?step21031) .
BIND(((?step21031 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1021) - 1) AS ?thisPositionOn211) .
BIND(?thisPositionOn211 AS ?thisPositionOn212) .
BIND(?this AS ?pfs1t1032) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn211))) AS ?pfsb208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn212))) AS ?pfse209) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn211, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a207')) AS ?annotation207) .
BIND(?this AS ?pfs206) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1037 faldo:location ?templateMotifSequenceMatchRegionP009681038 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681040 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1033 .
?templateMotifSequenceMatchRegionP009681038 faldo:begin ?templateMotifSequenceMatchBeginP009681039 .
?templateMotifSequenceMatchBeginP009681039 faldo:position ?templateMotifSequenceMatchBeginPositionP009681034 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681040 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1041 faldo:location ?targetMotifMatchRegionMatch1042 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1044 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1035 .
?targetMotifMatchRegionMatch1042 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1043 .
?targetMotifMatchRegionMatchBeginMF_01210_B1043 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1036 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1044 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1033, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1033) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1033, CONCAT('^(?:-*[^-]){', STR(((787 - ?templateMotifSequenceMatchBeginPositionP009681034) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11045) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1035, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1035) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1035, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11045), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1035, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1035) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1035, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11045), '}'), '')))), '[^-]', ''))) AS ?step21046) .
BIND(((?step21046 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1036) - 1) AS ?thisPositionOn218) .
BIND(?thisPositionOn218 AS ?thisPositionOn219) .
BIND(?this AS ?pfs1t1047) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn218))) AS ?pfsb215) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn219))) AS ?pfse216) .
FILTER (REGEX('[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn218, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a214')) AS ?annotation214) .
BIND(?this AS ?pfs213) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1052 faldo:location ?templateMotifSequenceMatchRegionP009681053 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681055 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1048 .
?templateMotifSequenceMatchRegionP009681053 faldo:begin ?templateMotifSequenceMatchBeginP009681054 .
?templateMotifSequenceMatchBeginP009681054 faldo:position ?templateMotifSequenceMatchBeginPositionP009681049 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681055 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1056 faldo:location ?targetMotifMatchRegionMatch1057 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1059 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1050 .
?targetMotifMatchRegionMatch1057 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1058 .
?targetMotifMatchRegionMatchBeginMF_01210_B1058 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1051 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1059 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1048, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1048) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1048, CONCAT('^(?:-*[^-]){', STR(((788 - ?templateMotifSequenceMatchBeginPositionP009681049) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11060) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1050, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1050) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11060), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1050, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1050) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1050, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11060), '}'), '')))), '[^-]', ''))) AS ?step21061) .
BIND(((?step21061 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1051) - 1) AS ?thisPositionOn225) .
BIND(?thisPositionOn225 AS ?thisPositionOn226) .
BIND(?this AS ?pfs1t1062) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn225))) AS ?pfsb222) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn226))) AS ?pfse223) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn225, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a221')) AS ?annotation221) .
BIND(?this AS ?pfs220) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1067 faldo:location ?templateMotifSequenceMatchRegionP009681068 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681070 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1063 .
?templateMotifSequenceMatchRegionP009681068 faldo:begin ?templateMotifSequenceMatchBeginP009681069 .
?templateMotifSequenceMatchBeginP009681069 faldo:position ?templateMotifSequenceMatchBeginPositionP009681064 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681070 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1071 faldo:location ?targetMotifMatchRegionMatch1072 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1074 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1065 .
?targetMotifMatchRegionMatch1072 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1073 .
?targetMotifMatchRegionMatchBeginMF_01210_B1073 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1066 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1074 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1063, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1063) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1063, CONCAT('^(?:-*[^-]){', STR(((789 - ?templateMotifSequenceMatchBeginPositionP009681064) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11075) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1065, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1065) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1065, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11075), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1065, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1065) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1065, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11075), '}'), '')))), '[^-]', ''))) AS ?step21076) .
BIND(((?step21076 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1066) - 1) AS ?thisPositionOn232) .
BIND(?thisPositionOn232 AS ?thisPositionOn233) .
BIND(?this AS ?pfs1t1077) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn232))) AS ?pfsb229) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn233))) AS ?pfse230) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn232, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a228')) AS ?annotation228) .
BIND(?this AS ?pfs227) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1082 faldo:location ?templateMotifSequenceMatchRegionP009681083 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681085 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1078 .
?templateMotifSequenceMatchRegionP009681083 faldo:begin ?templateMotifSequenceMatchBeginP009681084 .
?templateMotifSequenceMatchBeginP009681084 faldo:position ?templateMotifSequenceMatchBeginPositionP009681079 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681085 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1086 faldo:location ?targetMotifMatchRegionMatch1087 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1089 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1080 .
?targetMotifMatchRegionMatch1087 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1088 .
?targetMotifMatchRegionMatchBeginMF_01210_B1088 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1081 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1089 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1078, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1078) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1078, CONCAT('^(?:-*[^-]){', STR(((829 - ?templateMotifSequenceMatchBeginPositionP009681079) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11090) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1080, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1080) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1080, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11090), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1080, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1080) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1080, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11090), '}'), '')))), '[^-]', ''))) AS ?step21091) .
BIND(((?step21091 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1081) - 1) AS ?thisPositionOn239) .
BIND(?thisPositionOn239 AS ?thisPositionOn240) .
BIND(?this AS ?pfs1t1092) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn239))) AS ?pfsb236) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn240))) AS ?pfse237) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn239, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a235')) AS ?annotation235) .
BIND(?this AS ?pfs234) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1097 faldo:location ?templateMotifSequenceMatchRegionP009681098 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1093 .
?templateMotifSequenceMatchRegionP009681098 faldo:begin ?templateMotifSequenceMatchBeginP009681099 .
?templateMotifSequenceMatchBeginP009681099 faldo:position ?templateMotifSequenceMatchBeginPositionP009681094 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681100 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1101 faldo:location ?targetMotifMatchRegionMatch1102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1095 .
?targetMotifMatchRegionMatch1102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1103 .
?targetMotifMatchRegionMatchBeginMF_01210_B1103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1096 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1104 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1093, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1093) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1093, CONCAT('^(?:-*[^-]){', STR(((829 - ?templateMotifSequenceMatchBeginPositionP009681094) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1095, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1095) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1095, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1095, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1095) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1095, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11105), '}'), '')))), '[^-]', ''))) AS ?step21106) .
BIND(((?step21106 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1096) - 1) AS ?thisPositionOn246) .
BIND(?thisPositionOn246 AS ?thisPositionOn247) .
BIND(?this AS ?pfs1t1107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn246))) AS ?pfsb243) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn247))) AS ?pfse244) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn246, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a242')) AS ?annotation242) .
BIND(?this AS ?pfs241) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1112 faldo:location ?templateMotifSequenceMatchRegionP009681113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1108 .
?templateMotifSequenceMatchRegionP009681113 faldo:begin ?templateMotifSequenceMatchBeginP009681114 .
?templateMotifSequenceMatchBeginP009681114 faldo:position ?templateMotifSequenceMatchBeginPositionP009681109 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681115 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1116 faldo:location ?targetMotifMatchRegionMatch1117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1110 .
?targetMotifMatchRegionMatch1117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1118 .
?targetMotifMatchRegionMatchBeginMF_01210_B1118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1119 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1108, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1108) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1108, CONCAT('^(?:-*[^-]){', STR(((829 - ?templateMotifSequenceMatchBeginPositionP009681109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1110, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1110) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1110, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1110) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11120), '}'), '')))), '[^-]', ''))) AS ?step21121) .
BIND(((?step21121 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1111) - 1) AS ?thisPositionOn253) .
BIND(?thisPositionOn253 AS ?thisPositionOn254) .
BIND(?this AS ?pfs1t1122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn253))) AS ?pfsb250) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn254))) AS ?pfse251) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn253, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a249')) AS ?annotation249) .
BIND(?this AS ?pfs248) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1127 faldo:location ?templateMotifSequenceMatchRegionP009681128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1123 .
?templateMotifSequenceMatchRegionP009681128 faldo:begin ?templateMotifSequenceMatchBeginP009681129 .
?templateMotifSequenceMatchBeginP009681129 faldo:position ?templateMotifSequenceMatchBeginPositionP009681124 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681130 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1131 faldo:location ?targetMotifMatchRegionMatch1132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1125 .
?targetMotifMatchRegionMatch1132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1133 .
?targetMotifMatchRegionMatchBeginMF_01210_B1133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1134 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1123, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1123) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1123, CONCAT('^(?:-*[^-]){', STR(((841 - ?templateMotifSequenceMatchBeginPositionP009681124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1125, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1125) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1125, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1125) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11135), '}'), '')))), '[^-]', ''))) AS ?step21136) .
BIND(((?step21136 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1126) - 1) AS ?thisPositionOn260) .
BIND(?thisPositionOn260 AS ?thisPositionOn261) .
BIND(?this AS ?pfs1t1137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn260))) AS ?pfsb257) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn261))) AS ?pfse258) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn260, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a256')) AS ?annotation256) .
BIND(?this AS ?pfs255) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1142 faldo:location ?templateMotifSequenceMatchRegionP009681143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1138 .
?templateMotifSequenceMatchRegionP009681143 faldo:begin ?templateMotifSequenceMatchBeginP009681144 .
?templateMotifSequenceMatchBeginP009681144 faldo:position ?templateMotifSequenceMatchBeginPositionP009681139 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681145 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1146 faldo:location ?targetMotifMatchRegionMatch1147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1140 .
?targetMotifMatchRegionMatch1147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1148 .
?targetMotifMatchRegionMatchBeginMF_01210_B1148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1149 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1138, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1138) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1138, CONCAT('^(?:-*[^-]){', STR(((841 - ?templateMotifSequenceMatchBeginPositionP009681139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1140, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1140) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1140, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1140) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11150), '}'), '')))), '[^-]', ''))) AS ?step21151) .
BIND(((?step21151 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1141) - 1) AS ?thisPositionOn267) .
BIND(?thisPositionOn267 AS ?thisPositionOn268) .
BIND(?this AS ?pfs1t1152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn267))) AS ?pfsb264) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn268))) AS ?pfse265) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn267, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a263')) AS ?annotation263) .
BIND(?this AS ?pfs262) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1157 faldo:location ?templateMotifSequenceMatchRegionP009681158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1153 .
?templateMotifSequenceMatchRegionP009681158 faldo:begin ?templateMotifSequenceMatchBeginP009681159 .
?templateMotifSequenceMatchBeginP009681159 faldo:position ?templateMotifSequenceMatchBeginPositionP009681154 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681160 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1161 faldo:location ?targetMotifMatchRegionMatch1162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1155 .
?targetMotifMatchRegionMatch1162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1163 .
?targetMotifMatchRegionMatchBeginMF_01210_B1163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1164 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1153, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1153) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1153, CONCAT('^(?:-*[^-]){', STR(((841 - ?templateMotifSequenceMatchBeginPositionP009681154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1155, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1155) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1155, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1155) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11165), '}'), '')))), '[^-]', ''))) AS ?step21166) .
BIND(((?step21166 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1156) - 1) AS ?thisPositionOn274) .
BIND(?thisPositionOn274 AS ?thisPositionOn275) .
BIND(?this AS ?pfs1t1167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn274))) AS ?pfsb271) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn275))) AS ?pfse272) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn274, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a270')) AS ?annotation270) .
BIND(?this AS ?pfs269) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1172 faldo:location ?templateMotifSequenceMatchRegionP009681173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1168 .
?templateMotifSequenceMatchRegionP009681173 faldo:begin ?templateMotifSequenceMatchBeginP009681174 .
?templateMotifSequenceMatchBeginP009681174 faldo:position ?templateMotifSequenceMatchBeginPositionP009681169 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681175 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1176 faldo:location ?targetMotifMatchRegionMatch1177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1170 .
?targetMotifMatchRegionMatch1177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1178 .
?targetMotifMatchRegionMatchBeginMF_01210_B1178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1179 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1168, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1168) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1168, CONCAT('^(?:-*[^-]){', STR(((841 - ?templateMotifSequenceMatchBeginPositionP009681169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1170, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1170) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1170, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1170) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11180), '}'), '')))), '[^-]', ''))) AS ?step21181) .
BIND(((?step21181 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1171) - 1) AS ?thisPositionOn281) .
BIND(?thisPositionOn281 AS ?thisPositionOn282) .
BIND(?this AS ?pfs1t1182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn281))) AS ?pfsb278) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn282))) AS ?pfse279) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn281, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a277')) AS ?annotation277) .
BIND(?this AS ?pfs276) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1187 faldo:location ?templateMotifSequenceMatchRegionP009681188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1183 .
?templateMotifSequenceMatchRegionP009681188 faldo:begin ?templateMotifSequenceMatchBeginP009681189 .
?templateMotifSequenceMatchBeginP009681189 faldo:position ?templateMotifSequenceMatchBeginPositionP009681184 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681190 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1191 faldo:location ?targetMotifMatchRegionMatch1192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1185 .
?targetMotifMatchRegionMatch1192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1193 .
?targetMotifMatchRegionMatchBeginMF_01210_B1193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1194 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1183, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1183) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1183, CONCAT('^(?:-*[^-]){', STR(((841 - ?templateMotifSequenceMatchBeginPositionP009681184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1185, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1185) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1185, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1185) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11195), '}'), '')))), '[^-]', ''))) AS ?step21196) .
BIND(((?step21196 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1186) - 1) AS ?thisPositionOn288) .
BIND(?thisPositionOn288 AS ?thisPositionOn289) .
BIND(?this AS ?pfs1t1197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn288))) AS ?pfsb285) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn289))) AS ?pfse286) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn288, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a284')) AS ?annotation284) .
BIND(?this AS ?pfs283) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1202 faldo:location ?templateMotifSequenceMatchRegionP009681203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1198 .
?templateMotifSequenceMatchRegionP009681203 faldo:begin ?templateMotifSequenceMatchBeginP009681204 .
?templateMotifSequenceMatchBeginP009681204 faldo:position ?templateMotifSequenceMatchBeginPositionP009681199 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681205 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1206 faldo:location ?targetMotifMatchRegionMatch1207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1200 .
?targetMotifMatchRegionMatch1207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1208 .
?targetMotifMatchRegionMatchBeginMF_01210_B1208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1209 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1198, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1198) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1198, CONCAT('^(?:-*[^-]){', STR(((843 - ?templateMotifSequenceMatchBeginPositionP009681199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1200, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1200) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1200, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1200) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11210), '}'), '')))), '[^-]', ''))) AS ?step21211) .
BIND(((?step21211 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1201) - 1) AS ?thisPositionOn295) .
BIND(?thisPositionOn295 AS ?thisPositionOn296) .
BIND(?this AS ?pfs1t1212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn295))) AS ?pfsb292) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn296))) AS ?pfse293) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn295, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a291')) AS ?annotation291) .
BIND(?this AS ?pfs290) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1217 faldo:location ?templateMotifSequenceMatchRegionP009681218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP009681220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00968MF_01210_B1213 .
?templateMotifSequenceMatchRegionP009681218 faldo:begin ?templateMotifSequenceMatchBeginP009681219 .
?templateMotifSequenceMatchBeginP009681219 faldo:position ?templateMotifSequenceMatchBeginPositionP009681214 ;
faldo:reference isoform:P00968-1 .
?templateMotifSequenceProfileAlignmentOperationP009681220 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch1221 faldo:location ?targetMotifMatchRegionMatch1222 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_B1224 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00968MF_01210_B1215 .
?targetMotifMatchRegionMatch1222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_B1223 .
?targetMotifMatchRegionMatchBeginMF_01210_B1223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1216 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_B1224 edam:has_input signature:MF_01210_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00968MF_01210_B1213, 1, (STRLEN(?templateMotifCigarP00968MF_01210_B1213) - STRLEN(REPLACE(?templateMotifCigarP00968MF_01210_B1213, CONCAT('^(?:-*[^-]){', STR(((843 - ?templateMotifSequenceMatchBeginPositionP009681214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11225) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1215, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1215) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00968MF_01210_B1215, 1, (STRLEN(?targetMotifMatchCigarP00968MF_01210_B1215) - STRLEN(REPLACE(?targetMotifMatchCigarP00968MF_01210_B1215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11225), '}'), '')))), '[^-]', ''))) AS ?step21226) .
BIND(((?step21226 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_B1216) - 1) AS ?thisPositionOn302) .
BIND(?thisPositionOn302 AS ?thisPositionOn303) .
BIND(?this AS ?pfs1t1227) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn302))) AS ?pfsb299) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn303))) AS ?pfse300) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn302, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a298')) AS ?annotation298) .
BIND(?this AS ?pfs297) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1232 faldo:location ?templateMotifSequenceMatchRegionQ970U71233 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71235 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1228 .
?templateMotifSequenceMatchRegionQ970U71233 faldo:begin ?templateMotifSequenceMatchBeginQ970U71234 .
?templateMotifSequenceMatchBeginQ970U71234 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71229 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71235 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1236 faldo:location ?targetMotifMatchRegionMatch1237 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1239 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1230 .
?targetMotifMatchRegionMatch1237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1238 .
?targetMotifMatchRegionMatchBeginMF_01210_A1238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1231 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1239 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(1 AS ?thisPositionOn308) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1228, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1228) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1228, CONCAT('^(?:-*[^-]){', STR(((399 - ?templateMotifSequenceMatchBeginPositionQ970U71229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11240) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1230, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1230) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1230, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1230) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11240), '}'), '')))), '[^-]', ''))) AS ?step21241) .
BIND(((?step21241 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1231) - 1) AS ?thisPositionOn309) .
BIND(?this AS ?pfs2t1242) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn308))) AS ?pfsb306) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn309))) AS ?pfse307) .
FILTER ((BOUND(?thisPositionOn308) && BOUND(?thisPositionOn309))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a305')) AS ?annotation305) .
BIND(?this AS ?pfs304) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1247 faldo:location ?templateMotifSequenceMatchRegionQ970U71248 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71250 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1243 .
?templateMotifSequenceMatchRegionQ970U71248 faldo:begin ?templateMotifSequenceMatchBeginQ970U71249 .
?templateMotifSequenceMatchBeginQ970U71249 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71244 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71250 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1251 faldo:location ?targetMotifMatchRegionMatch1252 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1254 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1245 .
?targetMotifMatchRegionMatch1252 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1253 .
?targetMotifMatchRegionMatchBeginMF_01210_A1253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1246 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1254 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1243, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1243) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1243, CONCAT('^(?:-*[^-]){', STR(((400 - ?templateMotifSequenceMatchBeginPositionQ970U71244) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11255) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1245, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1245) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11255), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1245, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1245) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11255), '}'), '')))), '[^-]', ''))) AS ?step21256) .
BIND(((?step21256 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1246) - 1) AS ?thisPositionOn314) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1243, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1243) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1243, CONCAT('^(?:-*[^-]){', STR(((548 - ?templateMotifSequenceMatchBeginPositionQ970U71244) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11257) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1245, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1245) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11257), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1245, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1245) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11257), '}'), '')))), '[^-]', ''))) AS ?step21258) .
BIND(((?step21258 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1246) - 1) AS ?thisPositionOn315) .
BIND(?this AS ?pfs2t1259) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn314))) AS ?pfsb312) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn315))) AS ?pfse313) .
FILTER ((BOUND(?thisPositionOn314) && BOUND(?thisPositionOn315))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a311')) AS ?annotation311) .
BIND(?this AS ?pfs310) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1264 faldo:location ?templateMotifSequenceMatchRegionQ970U71265 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71267 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1260 .
?templateMotifSequenceMatchRegionQ970U71265 faldo:begin ?templateMotifSequenceMatchBeginQ970U71266 .
?templateMotifSequenceMatchBeginQ970U71266 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71261 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71267 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1268 faldo:location ?targetMotifMatchRegionMatch1269 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1271 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1262 .
?targetMotifMatchRegionMatch1269 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1270 .
?targetMotifMatchRegionMatchBeginMF_01210_A1270 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1263 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1271 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1260, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1260) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1260, CONCAT('^(?:-*[^-]){', STR(((549 - ?templateMotifSequenceMatchBeginPositionQ970U71261) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11272) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1262, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1262) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11272), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1262, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1262) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11272), '}'), '')))), '[^-]', ''))) AS ?step21273) .
BIND(((?step21273 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1263) - 1) AS ?thisPositionOn320) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1260, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1260) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1260, CONCAT('^(?:-*[^-]){', STR(((930 - ?templateMotifSequenceMatchBeginPositionQ970U71261) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11274) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1262, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1262) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11274), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1262, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1262) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11274), '}'), '')))), '[^-]', ''))) AS ?step21275) .
BIND(((?step21275 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1263) - 1) AS ?thisPositionOn321) .
BIND(?this AS ?pfs2t1276) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn320))) AS ?pfsb318) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn321))) AS ?pfse319) .
FILTER ((BOUND(?thisPositionOn320) && BOUND(?thisPositionOn321))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a317')) AS ?annotation317) .
BIND(?this AS ?pfs316) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1281 faldo:location ?templateMotifSequenceMatchRegionQ970U71282 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71284 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1277 .
?templateMotifSequenceMatchRegionQ970U71282 faldo:begin ?templateMotifSequenceMatchBeginQ970U71283 .
?templateMotifSequenceMatchBeginQ970U71283 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71278 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71284 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1285 faldo:location ?targetMotifMatchRegionMatch1286 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1288 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1279 .
?targetMotifMatchRegionMatch1286 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1287 .
?targetMotifMatchRegionMatchBeginMF_01210_A1287 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1280 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1288 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1277, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1277) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1277, CONCAT('^(?:-*[^-]){', STR(((931 - ?templateMotifSequenceMatchBeginPositionQ970U71278) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11289) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1279, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1279) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11289), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1279, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1279) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11289), '}'), '')))), '[^-]', ''))) AS ?step21290) .
BIND(((?step21290 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1280) - 1) AS ?thisPositionOn326) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn327) .
BIND(?this AS ?pfs2t1291) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn326))) AS ?pfsb324) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn327))) AS ?pfse325) .
FILTER ((BOUND(?thisPositionOn326) && BOUND(?thisPositionOn327))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a323')) AS ?annotation323) .
BIND(?this AS ?pfs322) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1296 faldo:location ?templateMotifSequenceMatchRegionQ970U71297 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71299 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1292 .
?templateMotifSequenceMatchRegionQ970U71297 faldo:begin ?templateMotifSequenceMatchBeginQ970U71298 .
?templateMotifSequenceMatchBeginQ970U71298 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71293 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71299 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1300 faldo:location ?targetMotifMatchRegionMatch1301 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1303 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1294 .
?targetMotifMatchRegionMatch1301 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1302 .
?targetMotifMatchRegionMatchBeginMF_01210_A1302 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1295 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1303 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1292, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1292) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1292, CONCAT('^(?:-*[^-]){', STR(((749 - ?templateMotifSequenceMatchBeginPositionQ970U71293) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11304) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1294, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1294) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11304), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1294, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1294) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11304), '}'), '')))), '[^-]', ''))) AS ?step21305) .
BIND(((?step21305 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1295) - 1) AS ?thisPositionOn333) .
BIND(?thisPositionOn333 AS ?thisPositionOn334) .
BIND(?this AS ?pfs2t1306) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn333))) AS ?pfsb330) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn334))) AS ?pfse331) .
FILTER (BOUND(?thisPositionOn333)) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a329')) AS ?annotation329) .
BIND(?this AS ?pfs328) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1311 faldo:location ?templateMotifSequenceMatchRegionQ970U71312 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71314 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1307 .
?templateMotifSequenceMatchRegionQ970U71312 faldo:begin ?templateMotifSequenceMatchBeginQ970U71313 .
?templateMotifSequenceMatchBeginQ970U71313 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71308 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71314 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1315 faldo:location ?targetMotifMatchRegionMatch1316 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1318 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1309 .
?targetMotifMatchRegionMatch1316 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1317 .
?targetMotifMatchRegionMatchBeginMF_01210_A1317 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1310 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1318 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1307, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1307) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1307, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionQ970U71308) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11319) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1309, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1309) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11319), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1309, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1309) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11319), '}'), '')))), '[^-]', ''))) AS ?step21320) .
BIND(((?step21320 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1310) - 1) AS ?thisPositionOn340) .
BIND(?thisPositionOn340 AS ?thisPositionOn341) .
BIND(?this AS ?pfs2t1321) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn340))) AS ?pfsb337) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn341))) AS ?pfse338) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn340, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a336')) AS ?annotation336) .
BIND(?this AS ?pfs335) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1326 faldo:location ?templateMotifSequenceMatchRegionQ970U71327 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71329 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1322 .
?templateMotifSequenceMatchRegionQ970U71327 faldo:begin ?templateMotifSequenceMatchBeginQ970U71328 .
?templateMotifSequenceMatchBeginQ970U71328 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71323 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71329 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1330 faldo:location ?targetMotifMatchRegionMatch1331 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1333 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1324 .
?targetMotifMatchRegionMatch1331 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1332 .
?targetMotifMatchRegionMatchBeginMF_01210_A1332 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1325 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1333 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1322, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1322) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1322, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionQ970U71323) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11334) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1324, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1324) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11334), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1324, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1324) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11334), '}'), '')))), '[^-]', ''))) AS ?step21335) .
BIND(((?step21335 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1325) - 1) AS ?thisPositionOn347) .
BIND(?thisPositionOn347 AS ?thisPositionOn348) .
BIND(?this AS ?pfs2t1336) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn347))) AS ?pfsb344) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn348))) AS ?pfse345) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn347, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a343')) AS ?annotation343) .
BIND(?this AS ?pfs342) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1341 faldo:location ?templateMotifSequenceMatchRegionQ970U71342 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71344 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1337 .
?templateMotifSequenceMatchRegionQ970U71342 faldo:begin ?templateMotifSequenceMatchBeginQ970U71343 .
?templateMotifSequenceMatchBeginQ970U71343 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71338 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71344 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1345 faldo:location ?targetMotifMatchRegionMatch1346 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1348 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1339 .
?targetMotifMatchRegionMatch1346 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1347 .
?targetMotifMatchRegionMatchBeginMF_01210_A1347 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1340 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1348 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1337, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1337) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1337, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionQ970U71338) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11349) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1339, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1339) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11349), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1339, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1339) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11349), '}'), '')))), '[^-]', ''))) AS ?step21350) .
BIND(((?step21350 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1340) - 1) AS ?thisPositionOn354) .
BIND(?thisPositionOn354 AS ?thisPositionOn355) .
BIND(?this AS ?pfs2t1351) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn354))) AS ?pfsb351) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn355))) AS ?pfse352) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn354, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a350')) AS ?annotation350) .
BIND(?this AS ?pfs349) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1356 faldo:location ?templateMotifSequenceMatchRegionQ970U71357 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71359 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1352 .
?templateMotifSequenceMatchRegionQ970U71357 faldo:begin ?templateMotifSequenceMatchBeginQ970U71358 .
?templateMotifSequenceMatchBeginQ970U71358 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71353 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71359 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1360 faldo:location ?targetMotifMatchRegionMatch1361 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1363 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1354 .
?targetMotifMatchRegionMatch1361 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1362 .
?targetMotifMatchRegionMatchBeginMF_01210_A1362 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1355 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1363 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1352, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1352) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1352, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionQ970U71353) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11364) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1354, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1354) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11364), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1354, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1354) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11364), '}'), '')))), '[^-]', ''))) AS ?step21365) .
BIND(((?step21365 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1355) - 1) AS ?thisPositionOn361) .
BIND(?thisPositionOn361 AS ?thisPositionOn362) .
BIND(?this AS ?pfs2t1366) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn361))) AS ?pfsb358) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn362))) AS ?pfse359) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn361, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a357')) AS ?annotation357) .
BIND(?this AS ?pfs356) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1371 faldo:location ?templateMotifSequenceMatchRegionQ970U71372 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71374 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1367 .
?templateMotifSequenceMatchRegionQ970U71372 faldo:begin ?templateMotifSequenceMatchBeginQ970U71373 .
?templateMotifSequenceMatchBeginQ970U71373 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71368 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71374 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1375 faldo:location ?targetMotifMatchRegionMatch1376 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1378 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1369 .
?targetMotifMatchRegionMatch1376 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1377 .
?targetMotifMatchRegionMatchBeginMF_01210_A1377 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1370 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1378 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1367, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1367) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1367, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionQ970U71368) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11379) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1369, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1369) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11379), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1369, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1369) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11379), '}'), '')))), '[^-]', ''))) AS ?step21380) .
BIND(((?step21380 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1370) - 1) AS ?thisPositionOn368) .
BIND(?thisPositionOn368 AS ?thisPositionOn369) .
BIND(?this AS ?pfs2t1381) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn368))) AS ?pfsb365) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn369))) AS ?pfse366) .
FILTER (REGEX('[EKQR]', SUBSTR(?thisSequenceValue, ?thisPositionOn368, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a364')) AS ?annotation364) .
BIND(?this AS ?pfs363) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1386 faldo:location ?templateMotifSequenceMatchRegionQ970U71387 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71389 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1382 .
?templateMotifSequenceMatchRegionQ970U71387 faldo:begin ?templateMotifSequenceMatchBeginQ970U71388 .
?templateMotifSequenceMatchBeginQ970U71388 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71383 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71389 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1390 faldo:location ?targetMotifMatchRegionMatch1391 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1393 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1384 .
?targetMotifMatchRegionMatch1391 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1392 .
?targetMotifMatchRegionMatchBeginMF_01210_A1392 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1385 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1393 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1382, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1382) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1382, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionQ970U71383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11394) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1384, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1384) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11394), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1384, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1384) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11394), '}'), '')))), '[^-]', ''))) AS ?step21395) .
BIND(((?step21395 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1385) - 1) AS ?thisPositionOn375) .
BIND(?thisPositionOn375 AS ?thisPositionOn376) .
BIND(?this AS ?pfs2t1396) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn375))) AS ?pfsb372) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn376))) AS ?pfse373) .
FILTER (REGEX('[LIV]', SUBSTR(?thisSequenceValue, ?thisPositionOn375, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a371')) AS ?annotation371) .
BIND(?this AS ?pfs370) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1401 faldo:location ?templateMotifSequenceMatchRegionQ970U71402 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71404 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1397 .
?templateMotifSequenceMatchRegionQ970U71402 faldo:begin ?templateMotifSequenceMatchBeginQ970U71403 .
?templateMotifSequenceMatchBeginQ970U71403 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71398 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71404 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1405 faldo:location ?targetMotifMatchRegionMatch1406 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1408 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1399 .
?targetMotifMatchRegionMatch1406 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1407 .
?targetMotifMatchRegionMatchBeginMF_01210_A1407 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1400 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1408 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1397, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1397) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1397, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionQ970U71398) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11409) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1399, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1399) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11409), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1399, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1399) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11409), '}'), '')))), '[^-]', ''))) AS ?step21410) .
BIND(((?step21410 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1400) - 1) AS ?thisPositionOn382) .
BIND(?thisPositionOn382 AS ?thisPositionOn383) .
BIND(?this AS ?pfs2t1411) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn382))) AS ?pfsb379) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn383))) AS ?pfse380) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn382, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a378')) AS ?annotation378) .
BIND(?this AS ?pfs377) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1416 faldo:location ?templateMotifSequenceMatchRegionQ970U71417 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71419 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1412 .
?templateMotifSequenceMatchRegionQ970U71417 faldo:begin ?templateMotifSequenceMatchBeginQ970U71418 .
?templateMotifSequenceMatchBeginQ970U71418 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71413 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71419 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1420 faldo:location ?targetMotifMatchRegionMatch1421 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1423 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1414 .
?targetMotifMatchRegionMatch1421 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1422 .
?targetMotifMatchRegionMatchBeginMF_01210_A1422 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1415 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1423 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1412, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1412) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1412, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionQ970U71413) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11424) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1414, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1414) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11424), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1414, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1414) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11424), '}'), '')))), '[^-]', ''))) AS ?step21425) .
BIND(((?step21425 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1415) - 1) AS ?thisPositionOn389) .
BIND(?thisPositionOn389 AS ?thisPositionOn390) .
BIND(?this AS ?pfs2t1426) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn389))) AS ?pfsb386) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn390))) AS ?pfse387) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn389, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a385')) AS ?annotation385) .
BIND(?this AS ?pfs384) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1431 faldo:location ?templateMotifSequenceMatchRegionQ970U71432 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71434 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1427 .
?templateMotifSequenceMatchRegionQ970U71432 faldo:begin ?templateMotifSequenceMatchBeginQ970U71433 .
?templateMotifSequenceMatchBeginQ970U71433 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71428 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71434 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1435 faldo:location ?targetMotifMatchRegionMatch1436 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1438 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1429 .
?targetMotifMatchRegionMatch1436 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1437 .
?targetMotifMatchRegionMatchBeginMF_01210_A1437 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1430 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1438 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1427, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1427) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1427, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionQ970U71428) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11439) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1429, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1429) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11439), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1429, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1429) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11439), '}'), '')))), '[^-]', ''))) AS ?step21440) .
BIND(((?step21440 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1430) - 1) AS ?thisPositionOn396) .
BIND(?thisPositionOn396 AS ?thisPositionOn397) .
BIND(?this AS ?pfs2t1441) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn396))) AS ?pfsb393) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn397))) AS ?pfse394) .
FILTER (REGEX('[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn396, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a392')) AS ?annotation392) .
BIND(?this AS ?pfs391) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1446 faldo:location ?templateMotifSequenceMatchRegionQ970U71447 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71449 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1442 .
?templateMotifSequenceMatchRegionQ970U71447 faldo:begin ?templateMotifSequenceMatchBeginQ970U71448 .
?templateMotifSequenceMatchBeginQ970U71448 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71443 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71449 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1450 faldo:location ?targetMotifMatchRegionMatch1451 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1453 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1444 .
?targetMotifMatchRegionMatch1451 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1452 .
?targetMotifMatchRegionMatchBeginMF_01210_A1452 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1445 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1453 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1442, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1442) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1442, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionQ970U71443) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11454) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1444, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1444) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1444, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11454), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1444, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1444) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1444, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11454), '}'), '')))), '[^-]', ''))) AS ?step21455) .
BIND(((?step21455 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1445) - 1) AS ?thisPositionOn403) .
BIND(?thisPositionOn403 AS ?thisPositionOn404) .
BIND(?this AS ?pfs2t1456) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn403))) AS ?pfsb400) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn404))) AS ?pfse401) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn403, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a399')) AS ?annotation399) .
BIND(?this AS ?pfs398) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1461 faldo:location ?templateMotifSequenceMatchRegionQ970U71462 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71464 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1457 .
?templateMotifSequenceMatchRegionQ970U71462 faldo:begin ?templateMotifSequenceMatchBeginQ970U71463 .
?templateMotifSequenceMatchBeginQ970U71463 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71458 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71464 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1465 faldo:location ?targetMotifMatchRegionMatch1466 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1468 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1459 .
?targetMotifMatchRegionMatch1466 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1467 .
?targetMotifMatchRegionMatchBeginMF_01210_A1467 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1460 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1468 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1457, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1457) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1457, CONCAT('^(?:-*[^-]){', STR(((282 - ?templateMotifSequenceMatchBeginPositionQ970U71458) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11469) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1459, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1459) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11469), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1459, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1459) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11469), '}'), '')))), '[^-]', ''))) AS ?step21470) .
BIND(((?step21470 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1460) - 1) AS ?thisPositionOn410) .
BIND(?thisPositionOn410 AS ?thisPositionOn411) .
BIND(?this AS ?pfs2t1471) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn410))) AS ?pfsb407) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn411))) AS ?pfse408) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn410, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a406')) AS ?annotation406) .
BIND(?this AS ?pfs405) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1476 faldo:location ?templateMotifSequenceMatchRegionQ970U71477 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71479 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1472 .
?templateMotifSequenceMatchRegionQ970U71477 faldo:begin ?templateMotifSequenceMatchBeginQ970U71478 .
?templateMotifSequenceMatchBeginQ970U71478 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71473 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71479 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1480 faldo:location ?targetMotifMatchRegionMatch1481 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1483 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1474 .
?targetMotifMatchRegionMatch1481 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1482 .
?targetMotifMatchRegionMatchBeginMF_01210_A1482 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1475 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1483 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1472, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1472) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1472, CONCAT('^(?:-*[^-]){', STR(((282 - ?templateMotifSequenceMatchBeginPositionQ970U71473) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11484) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1474, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1474) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11484), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1474, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1474) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11484), '}'), '')))), '[^-]', ''))) AS ?step21485) .
BIND(((?step21485 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1475) - 1) AS ?thisPositionOn417) .
BIND(?thisPositionOn417 AS ?thisPositionOn418) .
BIND(?this AS ?pfs2t1486) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn417))) AS ?pfsb414) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn418))) AS ?pfse415) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn417, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a413')) AS ?annotation413) .
BIND(?this AS ?pfs412) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1491 faldo:location ?templateMotifSequenceMatchRegionQ970U71492 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71494 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1487 .
?templateMotifSequenceMatchRegionQ970U71492 faldo:begin ?templateMotifSequenceMatchBeginQ970U71493 .
?templateMotifSequenceMatchBeginQ970U71493 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71488 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71494 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1495 faldo:location ?targetMotifMatchRegionMatch1496 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1498 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1489 .
?targetMotifMatchRegionMatch1496 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1497 .
?targetMotifMatchRegionMatchBeginMF_01210_A1497 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1490 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1498 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1487, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1487) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1487, CONCAT('^(?:-*[^-]){', STR(((282 - ?templateMotifSequenceMatchBeginPositionQ970U71488) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11499) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1489, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1489) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11499), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1489, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1489) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11499), '}'), '')))), '[^-]', ''))) AS ?step21500) .
BIND(((?step21500 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1490) - 1) AS ?thisPositionOn424) .
BIND(?thisPositionOn424 AS ?thisPositionOn425) .
BIND(?this AS ?pfs2t1501) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn424))) AS ?pfsb421) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn425))) AS ?pfse422) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn424, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a420')) AS ?annotation420) .
BIND(?this AS ?pfs419) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1506 faldo:location ?templateMotifSequenceMatchRegionQ970U71507 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71509 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1502 .
?templateMotifSequenceMatchRegionQ970U71507 faldo:begin ?templateMotifSequenceMatchBeginQ970U71508 .
?templateMotifSequenceMatchBeginQ970U71508 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71503 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71509 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1510 faldo:location ?targetMotifMatchRegionMatch1511 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1513 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1504 .
?targetMotifMatchRegionMatch1511 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1512 .
?targetMotifMatchRegionMatchBeginMF_01210_A1512 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1505 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1513 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1502, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1502) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1502, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionQ970U71503) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11514) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1504, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1504) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1504, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11514), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1504, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1504) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1504, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11514), '}'), '')))), '[^-]', ''))) AS ?step21515) .
BIND(((?step21515 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1505) - 1) AS ?thisPositionOn431) .
BIND(?thisPositionOn431 AS ?thisPositionOn432) .
BIND(?this AS ?pfs2t1516) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn431))) AS ?pfsb428) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn432))) AS ?pfse429) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn431, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a427')) AS ?annotation427) .
BIND(?this AS ?pfs426) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1521 faldo:location ?templateMotifSequenceMatchRegionQ970U71522 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71524 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1517 .
?templateMotifSequenceMatchRegionQ970U71522 faldo:begin ?templateMotifSequenceMatchBeginQ970U71523 .
?templateMotifSequenceMatchBeginQ970U71523 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71518 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71524 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1525 faldo:location ?targetMotifMatchRegionMatch1526 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1528 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1519 .
?targetMotifMatchRegionMatch1526 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1527 .
?targetMotifMatchRegionMatchBeginMF_01210_A1527 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1520 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1528 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1517, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1517) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1517, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionQ970U71518) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11529) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1519, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1519) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1519, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11529), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1519, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1519) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1519, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11529), '}'), '')))), '[^-]', ''))) AS ?step21530) .
BIND(((?step21530 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1520) - 1) AS ?thisPositionOn438) .
BIND(?thisPositionOn438 AS ?thisPositionOn439) .
BIND(?this AS ?pfs2t1531) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn438))) AS ?pfsb435) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn439))) AS ?pfse436) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn438, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a434')) AS ?annotation434) .
BIND(?this AS ?pfs433) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1536 faldo:location ?templateMotifSequenceMatchRegionQ970U71537 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71539 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1532 .
?templateMotifSequenceMatchRegionQ970U71537 faldo:begin ?templateMotifSequenceMatchBeginQ970U71538 .
?templateMotifSequenceMatchBeginQ970U71538 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71533 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71539 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1540 faldo:location ?targetMotifMatchRegionMatch1541 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1543 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1534 .
?targetMotifMatchRegionMatch1541 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1542 .
?targetMotifMatchRegionMatchBeginMF_01210_A1542 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1535 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1543 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1532, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1532) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1532, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionQ970U71533) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11544) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1534, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1534) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1534, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11544), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1534, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1534) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1534, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11544), '}'), '')))), '[^-]', ''))) AS ?step21545) .
BIND(((?step21545 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1535) - 1) AS ?thisPositionOn445) .
BIND(?thisPositionOn445 AS ?thisPositionOn446) .
BIND(?this AS ?pfs2t1546) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn445))) AS ?pfsb442) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn446))) AS ?pfse443) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn445, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a441')) AS ?annotation441) .
BIND(?this AS ?pfs440) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1551 faldo:location ?templateMotifSequenceMatchRegionQ970U71552 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71554 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1547 .
?templateMotifSequenceMatchRegionQ970U71552 faldo:begin ?templateMotifSequenceMatchBeginQ970U71553 .
?templateMotifSequenceMatchBeginQ970U71553 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71548 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71554 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1555 faldo:location ?targetMotifMatchRegionMatch1556 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1558 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1549 .
?targetMotifMatchRegionMatch1556 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1557 .
?targetMotifMatchRegionMatchBeginMF_01210_A1557 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1550 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1558 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1547, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1547) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1547, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionQ970U71548) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11559) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1549, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1549) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1549, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11559), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1549, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1549) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1549, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11559), '}'), '')))), '[^-]', ''))) AS ?step21560) .
BIND(((?step21560 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1550) - 1) AS ?thisPositionOn452) .
BIND(?thisPositionOn452 AS ?thisPositionOn453) .
BIND(?this AS ?pfs2t1561) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn452))) AS ?pfsb449) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn453))) AS ?pfse450) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn452, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a448')) AS ?annotation448) .
BIND(?this AS ?pfs447) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1566 faldo:location ?templateMotifSequenceMatchRegionQ970U71567 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71569 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1562 .
?templateMotifSequenceMatchRegionQ970U71567 faldo:begin ?templateMotifSequenceMatchBeginQ970U71568 .
?templateMotifSequenceMatchBeginQ970U71568 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71563 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71569 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1570 faldo:location ?targetMotifMatchRegionMatch1571 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1573 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1564 .
?targetMotifMatchRegionMatch1571 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1572 .
?targetMotifMatchRegionMatchBeginMF_01210_A1572 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1565 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1573 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1562, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1562) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1562, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionQ970U71563) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11574) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1564, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1564) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1564, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11574), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1564, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1564) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1564, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11574), '}'), '')))), '[^-]', ''))) AS ?step21575) .
BIND(((?step21575 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1565) - 1) AS ?thisPositionOn459) .
BIND(?thisPositionOn459 AS ?thisPositionOn460) .
BIND(?this AS ?pfs2t1576) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn459))) AS ?pfsb456) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn460))) AS ?pfse457) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn459, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a455')) AS ?annotation455) .
BIND(?this AS ?pfs454) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1581 faldo:location ?templateMotifSequenceMatchRegionQ970U71582 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71584 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1577 .
?templateMotifSequenceMatchRegionQ970U71582 faldo:begin ?templateMotifSequenceMatchBeginQ970U71583 .
?templateMotifSequenceMatchBeginQ970U71583 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71578 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71584 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1585 faldo:location ?targetMotifMatchRegionMatch1586 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1588 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1579 .
?targetMotifMatchRegionMatch1586 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1587 .
?targetMotifMatchRegionMatchBeginMF_01210_A1587 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1580 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1588 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1577, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1577) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1577, CONCAT('^(?:-*[^-]){', STR(((298 - ?templateMotifSequenceMatchBeginPositionQ970U71578) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11589) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1579, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1579) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1579, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11589), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1579, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1579) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1579, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11589), '}'), '')))), '[^-]', ''))) AS ?step21590) .
BIND(((?step21590 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1580) - 1) AS ?thisPositionOn466) .
BIND(?thisPositionOn466 AS ?thisPositionOn467) .
BIND(?this AS ?pfs2t1591) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn466))) AS ?pfsb463) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn467))) AS ?pfse464) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn466, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a462')) AS ?annotation462) .
BIND(?this AS ?pfs461) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1596 faldo:location ?templateMotifSequenceMatchRegionQ970U71597 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71599 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1592 .
?templateMotifSequenceMatchRegionQ970U71597 faldo:begin ?templateMotifSequenceMatchBeginQ970U71598 .
?templateMotifSequenceMatchBeginQ970U71598 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71593 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71599 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1600 faldo:location ?targetMotifMatchRegionMatch1601 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1603 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1594 .
?targetMotifMatchRegionMatch1601 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1602 .
?targetMotifMatchRegionMatchBeginMF_01210_A1602 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1595 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1603 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1592, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1592) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1592, CONCAT('^(?:-*[^-]){', STR(((298 - ?templateMotifSequenceMatchBeginPositionQ970U71593) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11604) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1594, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1594) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1594, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11604), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1594, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1594) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1594, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11604), '}'), '')))), '[^-]', ''))) AS ?step21605) .
BIND(((?step21605 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1595) - 1) AS ?thisPositionOn473) .
BIND(?thisPositionOn473 AS ?thisPositionOn474) .
BIND(?this AS ?pfs2t1606) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn473))) AS ?pfsb470) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn474))) AS ?pfse471) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn473, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a469')) AS ?annotation469) .
BIND(?this AS ?pfs468) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1611 faldo:location ?templateMotifSequenceMatchRegionQ970U71612 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71614 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1607 .
?templateMotifSequenceMatchRegionQ970U71612 faldo:begin ?templateMotifSequenceMatchBeginQ970U71613 .
?templateMotifSequenceMatchBeginQ970U71613 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71608 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71614 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1615 faldo:location ?targetMotifMatchRegionMatch1616 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1618 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1609 .
?targetMotifMatchRegionMatch1616 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1617 .
?targetMotifMatchRegionMatchBeginMF_01210_A1617 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1610 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1618 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1607, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1607) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1607, CONCAT('^(?:-*[^-]){', STR(((710 - ?templateMotifSequenceMatchBeginPositionQ970U71608) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11619) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1609, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1609) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1609, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11619), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1609, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1609) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1609, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11619), '}'), '')))), '[^-]', ''))) AS ?step21620) .
BIND(((?step21620 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1610) - 1) AS ?thisPositionOn480) .
BIND(?thisPositionOn480 AS ?thisPositionOn481) .
BIND(?this AS ?pfs2t1621) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn480))) AS ?pfsb477) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn481))) AS ?pfse478) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn480, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a476')) AS ?annotation476) .
BIND(?this AS ?pfs475) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1626 faldo:location ?templateMotifSequenceMatchRegionQ970U71627 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71629 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1622 .
?templateMotifSequenceMatchRegionQ970U71627 faldo:begin ?templateMotifSequenceMatchBeginQ970U71628 .
?templateMotifSequenceMatchBeginQ970U71628 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71623 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71629 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1630 faldo:location ?targetMotifMatchRegionMatch1631 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1633 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1624 .
?targetMotifMatchRegionMatch1631 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1632 .
?targetMotifMatchRegionMatchBeginMF_01210_A1632 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1625 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1633 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1622, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1622) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1622, CONCAT('^(?:-*[^-]){', STR(((751 - ?templateMotifSequenceMatchBeginPositionQ970U71623) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11634) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1624, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1624) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1624, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11634), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1624, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1624) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1624, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11634), '}'), '')))), '[^-]', ''))) AS ?step21635) .
BIND(((?step21635 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1625) - 1) AS ?thisPositionOn487) .
BIND(?thisPositionOn487 AS ?thisPositionOn488) .
BIND(?this AS ?pfs2t1636) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn487))) AS ?pfsb484) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn488))) AS ?pfse485) .
FILTER (REGEX('[LIV]', SUBSTR(?thisSequenceValue, ?thisPositionOn487, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a483')) AS ?annotation483) .
BIND(?this AS ?pfs482) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1641 faldo:location ?templateMotifSequenceMatchRegionQ970U71642 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71644 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1637 .
?templateMotifSequenceMatchRegionQ970U71642 faldo:begin ?templateMotifSequenceMatchBeginQ970U71643 .
?templateMotifSequenceMatchBeginQ970U71643 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71638 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71644 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1645 faldo:location ?targetMotifMatchRegionMatch1646 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1648 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1639 .
?targetMotifMatchRegionMatch1646 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1647 .
?targetMotifMatchRegionMatchBeginMF_01210_A1647 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1640 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1648 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1637, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1637) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1637, CONCAT('^(?:-*[^-]){', STR(((756 - ?templateMotifSequenceMatchBeginPositionQ970U71638) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11649) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1639, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1639) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1639, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11649), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1639, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1639) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1639, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11649), '}'), '')))), '[^-]', ''))) AS ?step21650) .
BIND(((?step21650 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1640) - 1) AS ?thisPositionOn494) .
BIND(?thisPositionOn494 AS ?thisPositionOn495) .
BIND(?this AS ?pfs2t1651) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn494))) AS ?pfsb491) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn495))) AS ?pfse492) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn494, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a490')) AS ?annotation490) .
BIND(?this AS ?pfs489) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1656 faldo:location ?templateMotifSequenceMatchRegionQ970U71657 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71659 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1652 .
?templateMotifSequenceMatchRegionQ970U71657 faldo:begin ?templateMotifSequenceMatchBeginQ970U71658 .
?templateMotifSequenceMatchBeginQ970U71658 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71653 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71659 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1660 faldo:location ?targetMotifMatchRegionMatch1661 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1663 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1654 .
?targetMotifMatchRegionMatch1661 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1662 .
?targetMotifMatchRegionMatchBeginMF_01210_A1662 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1655 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1663 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1652, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1652) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1652, CONCAT('^(?:-*[^-]){', STR(((780 - ?templateMotifSequenceMatchBeginPositionQ970U71653) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11664) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1654, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1654) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1654, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11664), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1654, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1654) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1654, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11664), '}'), '')))), '[^-]', ''))) AS ?step21665) .
BIND(((?step21665 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1655) - 1) AS ?thisPositionOn501) .
BIND(?thisPositionOn501 AS ?thisPositionOn502) .
BIND(?this AS ?pfs2t1666) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn501))) AS ?pfsb498) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn502))) AS ?pfse499) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn501, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a497')) AS ?annotation497) .
BIND(?this AS ?pfs496) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1671 faldo:location ?templateMotifSequenceMatchRegionQ970U71672 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71674 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1667 .
?templateMotifSequenceMatchRegionQ970U71672 faldo:begin ?templateMotifSequenceMatchBeginQ970U71673 .
?templateMotifSequenceMatchBeginQ970U71673 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71668 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71674 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1675 faldo:location ?targetMotifMatchRegionMatch1676 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1678 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1669 .
?targetMotifMatchRegionMatch1676 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1677 .
?targetMotifMatchRegionMatchBeginMF_01210_A1677 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1670 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1678 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1667, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1667) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1667, CONCAT('^(?:-*[^-]){', STR(((781 - ?templateMotifSequenceMatchBeginPositionQ970U71668) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11679) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1669, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1669) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1669, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11679), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1669, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1669) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1669, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11679), '}'), '')))), '[^-]', ''))) AS ?step21680) .
BIND(((?step21680 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1670) - 1) AS ?thisPositionOn508) .
BIND(?thisPositionOn508 AS ?thisPositionOn509) .
BIND(?this AS ?pfs2t1681) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn508))) AS ?pfsb505) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn509))) AS ?pfse506) .
FILTER (REGEX('[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn508, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a504')) AS ?annotation504) .
BIND(?this AS ?pfs503) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1686 faldo:location ?templateMotifSequenceMatchRegionQ970U71687 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71689 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1682 .
?templateMotifSequenceMatchRegionQ970U71687 faldo:begin ?templateMotifSequenceMatchBeginQ970U71688 .
?templateMotifSequenceMatchBeginQ970U71688 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71683 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71689 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1690 faldo:location ?targetMotifMatchRegionMatch1691 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1693 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1684 .
?targetMotifMatchRegionMatch1691 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1692 .
?targetMotifMatchRegionMatchBeginMF_01210_A1692 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1685 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1693 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1682, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1682) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1682, CONCAT('^(?:-*[^-]){', STR(((782 - ?templateMotifSequenceMatchBeginPositionQ970U71683) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11694) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1684, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1684) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1684, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11694), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1684, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1684) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1684, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11694), '}'), '')))), '[^-]', ''))) AS ?step21695) .
BIND(((?step21695 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1685) - 1) AS ?thisPositionOn515) .
BIND(?thisPositionOn515 AS ?thisPositionOn516) .
BIND(?this AS ?pfs2t1696) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn515))) AS ?pfsb512) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn516))) AS ?pfse513) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn515, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a511')) AS ?annotation511) .
BIND(?this AS ?pfs510) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1701 faldo:location ?templateMotifSequenceMatchRegionQ970U71702 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71704 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1697 .
?templateMotifSequenceMatchRegionQ970U71702 faldo:begin ?templateMotifSequenceMatchBeginQ970U71703 .
?templateMotifSequenceMatchBeginQ970U71703 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71698 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71704 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1705 faldo:location ?targetMotifMatchRegionMatch1706 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1708 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1699 .
?targetMotifMatchRegionMatch1706 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1707 .
?targetMotifMatchRegionMatchBeginMF_01210_A1707 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1700 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1708 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1697, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1697) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1697, CONCAT('^(?:-*[^-]){', STR(((783 - ?templateMotifSequenceMatchBeginPositionQ970U71698) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11709) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1699, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1699) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11709), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1699, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1699) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11709), '}'), '')))), '[^-]', ''))) AS ?step21710) .
BIND(((?step21710 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1700) - 1) AS ?thisPositionOn522) .
BIND(?thisPositionOn522 AS ?thisPositionOn523) .
BIND(?this AS ?pfs2t1711) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn522))) AS ?pfsb519) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn523))) AS ?pfse520) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn522, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a518')) AS ?annotation518) .
BIND(?this AS ?pfs517) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1716 faldo:location ?templateMotifSequenceMatchRegionQ970U71717 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71719 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1712 .
?templateMotifSequenceMatchRegionQ970U71717 faldo:begin ?templateMotifSequenceMatchBeginQ970U71718 .
?templateMotifSequenceMatchBeginQ970U71718 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71713 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71719 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1720 faldo:location ?targetMotifMatchRegionMatch1721 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1723 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1714 .
?targetMotifMatchRegionMatch1721 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1722 .
?targetMotifMatchRegionMatchBeginMF_01210_A1722 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1715 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1723 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1712, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1712) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1712, CONCAT('^(?:-*[^-]){', STR(((823 - ?templateMotifSequenceMatchBeginPositionQ970U71713) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11724) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1714, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1714) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1714, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11724), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1714, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1714) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1714, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11724), '}'), '')))), '[^-]', ''))) AS ?step21725) .
BIND(((?step21725 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1715) - 1) AS ?thisPositionOn529) .
BIND(?thisPositionOn529 AS ?thisPositionOn530) .
BIND(?this AS ?pfs2t1726) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn529))) AS ?pfsb526) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn530))) AS ?pfse527) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn529, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a525')) AS ?annotation525) .
BIND(?this AS ?pfs524) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1731 faldo:location ?templateMotifSequenceMatchRegionQ970U71732 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71734 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1727 .
?templateMotifSequenceMatchRegionQ970U71732 faldo:begin ?templateMotifSequenceMatchBeginQ970U71733 .
?templateMotifSequenceMatchBeginQ970U71733 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71728 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71734 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1735 faldo:location ?targetMotifMatchRegionMatch1736 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1738 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1729 .
?targetMotifMatchRegionMatch1736 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1737 .
?targetMotifMatchRegionMatchBeginMF_01210_A1737 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1730 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1738 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1727, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1727) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1727, CONCAT('^(?:-*[^-]){', STR(((823 - ?templateMotifSequenceMatchBeginPositionQ970U71728) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11739) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1729, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1729) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1729, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11739), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1729, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1729) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1729, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11739), '}'), '')))), '[^-]', ''))) AS ?step21740) .
BIND(((?step21740 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1730) - 1) AS ?thisPositionOn536) .
BIND(?thisPositionOn536 AS ?thisPositionOn537) .
BIND(?this AS ?pfs2t1741) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn536))) AS ?pfsb533) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn537))) AS ?pfse534) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn536, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a532')) AS ?annotation532) .
BIND(?this AS ?pfs531) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1746 faldo:location ?templateMotifSequenceMatchRegionQ970U71747 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71749 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1742 .
?templateMotifSequenceMatchRegionQ970U71747 faldo:begin ?templateMotifSequenceMatchBeginQ970U71748 .
?templateMotifSequenceMatchBeginQ970U71748 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71743 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71749 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1750 faldo:location ?targetMotifMatchRegionMatch1751 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1753 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1744 .
?targetMotifMatchRegionMatch1751 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1752 .
?targetMotifMatchRegionMatchBeginMF_01210_A1752 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1745 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1753 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1742, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1742) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1742, CONCAT('^(?:-*[^-]){', STR(((823 - ?templateMotifSequenceMatchBeginPositionQ970U71743) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11754) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1744, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1744) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1744, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11754), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1744, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1744) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1744, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11754), '}'), '')))), '[^-]', ''))) AS ?step21755) .
BIND(((?step21755 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1745) - 1) AS ?thisPositionOn543) .
BIND(?thisPositionOn543 AS ?thisPositionOn544) .
BIND(?this AS ?pfs2t1756) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn543))) AS ?pfsb540) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn544))) AS ?pfse541) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn543, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a539')) AS ?annotation539) .
BIND(?this AS ?pfs538) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1761 faldo:location ?templateMotifSequenceMatchRegionQ970U71762 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71764 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1757 .
?templateMotifSequenceMatchRegionQ970U71762 faldo:begin ?templateMotifSequenceMatchBeginQ970U71763 .
?templateMotifSequenceMatchBeginQ970U71763 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71758 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71764 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1765 faldo:location ?targetMotifMatchRegionMatch1766 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1768 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1759 .
?targetMotifMatchRegionMatch1766 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1767 .
?targetMotifMatchRegionMatchBeginMF_01210_A1767 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1760 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1768 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1757, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1757) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1757, CONCAT('^(?:-*[^-]){', STR(((835 - ?templateMotifSequenceMatchBeginPositionQ970U71758) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11769) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1759, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1759) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1759, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11769), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1759, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1759) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1759, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11769), '}'), '')))), '[^-]', ''))) AS ?step21770) .
BIND(((?step21770 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1760) - 1) AS ?thisPositionOn550) .
BIND(?thisPositionOn550 AS ?thisPositionOn551) .
BIND(?this AS ?pfs2t1771) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn550))) AS ?pfsb547) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn551))) AS ?pfse548) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn550, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a546')) AS ?annotation546) .
BIND(?this AS ?pfs545) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1776 faldo:location ?templateMotifSequenceMatchRegionQ970U71777 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71779 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1772 .
?templateMotifSequenceMatchRegionQ970U71777 faldo:begin ?templateMotifSequenceMatchBeginQ970U71778 .
?templateMotifSequenceMatchBeginQ970U71778 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71773 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71779 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1780 faldo:location ?targetMotifMatchRegionMatch1781 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1783 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1774 .
?targetMotifMatchRegionMatch1781 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1782 .
?targetMotifMatchRegionMatchBeginMF_01210_A1782 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1775 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1783 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1772, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1772) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1772, CONCAT('^(?:-*[^-]){', STR(((835 - ?templateMotifSequenceMatchBeginPositionQ970U71773) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11784) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1774, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1774) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1774, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11784), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1774, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1774) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1774, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11784), '}'), '')))), '[^-]', ''))) AS ?step21785) .
BIND(((?step21785 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1775) - 1) AS ?thisPositionOn557) .
BIND(?thisPositionOn557 AS ?thisPositionOn558) .
BIND(?this AS ?pfs2t1786) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn557))) AS ?pfsb554) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn558))) AS ?pfse555) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn557, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a553')) AS ?annotation553) .
BIND(?this AS ?pfs552) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1791 faldo:location ?templateMotifSequenceMatchRegionQ970U71792 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71794 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1787 .
?templateMotifSequenceMatchRegionQ970U71792 faldo:begin ?templateMotifSequenceMatchBeginQ970U71793 .
?templateMotifSequenceMatchBeginQ970U71793 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71788 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71794 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1795 faldo:location ?targetMotifMatchRegionMatch1796 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1798 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1789 .
?targetMotifMatchRegionMatch1796 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1797 .
?targetMotifMatchRegionMatchBeginMF_01210_A1797 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1790 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1798 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1787, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1787) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1787, CONCAT('^(?:-*[^-]){', STR(((835 - ?templateMotifSequenceMatchBeginPositionQ970U71788) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11799) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1789, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1789) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1789, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11799), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1789, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1789) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1789, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11799), '}'), '')))), '[^-]', ''))) AS ?step21800) .
BIND(((?step21800 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1790) - 1) AS ?thisPositionOn564) .
BIND(?thisPositionOn564 AS ?thisPositionOn565) .
BIND(?this AS ?pfs2t1801) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn564))) AS ?pfsb561) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn565))) AS ?pfse562) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn564, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a560')) AS ?annotation560) .
BIND(?this AS ?pfs559) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1806 faldo:location ?templateMotifSequenceMatchRegionQ970U71807 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71809 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1802 .
?templateMotifSequenceMatchRegionQ970U71807 faldo:begin ?templateMotifSequenceMatchBeginQ970U71808 .
?templateMotifSequenceMatchBeginQ970U71808 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71803 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71809 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1810 faldo:location ?targetMotifMatchRegionMatch1811 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1813 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1804 .
?targetMotifMatchRegionMatch1811 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1812 .
?targetMotifMatchRegionMatchBeginMF_01210_A1812 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1805 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1813 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1802, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1802) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1802, CONCAT('^(?:-*[^-]){', STR(((835 - ?templateMotifSequenceMatchBeginPositionQ970U71803) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11814) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1804, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1804) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1804, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11814), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1804, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1804) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1804, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11814), '}'), '')))), '[^-]', ''))) AS ?step21815) .
BIND(((?step21815 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1805) - 1) AS ?thisPositionOn571) .
BIND(?thisPositionOn571 AS ?thisPositionOn572) .
BIND(?this AS ?pfs2t1816) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn571))) AS ?pfsb568) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn572))) AS ?pfse569) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn571, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a567')) AS ?annotation567) .
BIND(?this AS ?pfs566) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1821 faldo:location ?templateMotifSequenceMatchRegionQ970U71822 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71824 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1817 .
?templateMotifSequenceMatchRegionQ970U71822 faldo:begin ?templateMotifSequenceMatchBeginQ970U71823 .
?templateMotifSequenceMatchBeginQ970U71823 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71818 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71824 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1825 faldo:location ?targetMotifMatchRegionMatch1826 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1828 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1819 .
?targetMotifMatchRegionMatch1826 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1827 .
?targetMotifMatchRegionMatchBeginMF_01210_A1827 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1820 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1828 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1817, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1817) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1817, CONCAT('^(?:-*[^-]){', STR(((835 - ?templateMotifSequenceMatchBeginPositionQ970U71818) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11829) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1819, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1819) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1819, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11829), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1819, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1819) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1819, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11829), '}'), '')))), '[^-]', ''))) AS ?step21830) .
BIND(((?step21830 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1820) - 1) AS ?thisPositionOn578) .
BIND(?thisPositionOn578 AS ?thisPositionOn579) .
BIND(?this AS ?pfs2t1831) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn578))) AS ?pfsb575) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn579))) AS ?pfse576) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn578, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a574')) AS ?annotation574) .
BIND(?this AS ?pfs573) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1836 faldo:location ?templateMotifSequenceMatchRegionQ970U71837 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71839 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1832 .
?templateMotifSequenceMatchRegionQ970U71837 faldo:begin ?templateMotifSequenceMatchBeginQ970U71838 .
?templateMotifSequenceMatchBeginQ970U71838 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71833 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71839 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1840 faldo:location ?targetMotifMatchRegionMatch1841 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1843 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1834 .
?targetMotifMatchRegionMatch1841 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1842 .
?targetMotifMatchRegionMatchBeginMF_01210_A1842 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1835 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1843 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1832, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1832) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1832, CONCAT('^(?:-*[^-]){', STR(((837 - ?templateMotifSequenceMatchBeginPositionQ970U71833) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11844) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1834, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1834) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1834, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11844), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1834, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1834) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1834, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11844), '}'), '')))), '[^-]', ''))) AS ?step21845) .
BIND(((?step21845 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1835) - 1) AS ?thisPositionOn585) .
BIND(?thisPositionOn585 AS ?thisPositionOn586) .
BIND(?this AS ?pfs2t1846) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn585))) AS ?pfsb582) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn586))) AS ?pfse583) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn585, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a581')) AS ?annotation581) .
BIND(?this AS ?pfs580) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch1851 faldo:location ?templateMotifSequenceMatchRegionQ970U71852 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ970U71854 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ970U7MF_01210_A1847 .
?templateMotifSequenceMatchRegionQ970U71852 faldo:begin ?templateMotifSequenceMatchBeginQ970U71853 .
?templateMotifSequenceMatchBeginQ970U71853 faldo:position ?templateMotifSequenceMatchBeginPositionQ970U71848 ;
faldo:reference isoform:Q970U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ970U71854 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch1855 faldo:location ?targetMotifMatchRegionMatch1856 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01210_A1858 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ970U7MF_01210_A1849 .
?targetMotifMatchRegionMatch1856 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01210_A1857 .
?targetMotifMatchRegionMatchBeginMF_01210_A1857 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1850 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01210_A1858 edam:has_input signature:MF_01210_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ970U7MF_01210_A1847, 1, (STRLEN(?templateMotifCigarQ970U7MF_01210_A1847) - STRLEN(REPLACE(?templateMotifCigarQ970U7MF_01210_A1847, CONCAT('^(?:-*[^-]){', STR(((837 - ?templateMotifSequenceMatchBeginPositionQ970U71848) + 1)), '}'), '')))), '[a-z]', '')) AS ?step11859) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1849, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1849) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1849, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11859), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ970U7MF_01210_A1849, 1, (STRLEN(?targetMotifMatchCigarQ970U7MF_01210_A1849) - STRLEN(REPLACE(?targetMotifMatchCigarQ970U7MF_01210_A1849, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step11859), '}'), '')))), '[^-]', ''))) AS ?step21860) .
BIND(((?step21860 + ?targetMotifMatchRegionMatchBeginPositionMF_01210_A1850) - 1) AS ?thisPositionOn592) .
BIND(?thisPositionOn592 AS ?thisPositionOn593) .
BIND(?this AS ?pfs2t1861) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn592))) AS ?pfsb589) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn593))) AS ?pfse590) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn592, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01210a588')) AS ?annotation588) .
BIND(?this AS ?pfs587) .
}
}
"xsd:string |
