| http://purl.uniprot.org/unirules/MF_00054#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:21690 up:source unirule:MF_00054 .
_:21691 up:source unirule:MF_00054 .
_:21692 up:source unirule:MF_00054 .
_:21693 up:source unirule:MF_00054 .
_:21694 up:source unirule:MF_00054 .
_:21695 up:source unirule:MF_00054 .
_:21696 up:source unirule:MF_00054 .
_:21697 up:source unirule:MF_00054 .
_:21698 up:source unirule:MF_00054 .
_:21699 up:source unirule:MF_00054 .
_:21700 up:source unirule:MF_00054 .
_:21701 up:source unirule:MF_00054 .
_:21702 up:source unirule:MF_00054 .
_:21703 up:source unirule:MF_00054 .
_:21704 up:source unirule:MF_00054 .
_:21705 up:source unirule:MF_00054 .
_:21706 up:source unirule:MF_00054 .
_:21707 up:source unirule:MF_00054 .
_:21708 up:source unirule:MF_00054 .
_:21709 up:source unirule:MF_00054 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0003746 ,
GO:0005525 ,
GO:0005737 ,
GO:0006414 ,
keyword:251 ,
keyword:342 ,
keyword:547 ,
keyword:648 ,
keyword:963 .
?gene0 skos:prefLabel 'fusA' .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.' .
?annotation2 a up:Subcellular_Location_Annotation .
?annotation2li3 up:cellularComponent .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:37565 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:37565 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:37565 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Diphthamide' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:37565 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:37565 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:37565 .
_:21710 a rdf:Statement ;
up:attribution _:21690 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:21711 a rdf:Statement ;
up:attribution _:21691 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:21712 a rdf:Statement ;
up:attribution _:21692 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:21713 a rdf:Statement ;
up:attribution _:21693 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:21714 a rdf:Statement ;
up:attribution _:21694 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:21715 a rdf:Statement ;
up:attribution _:21695 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:251 .
_:21716 a rdf:Statement ;
up:attribution _:21696 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:21717 a rdf:Statement ;
up:attribution _:21697 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:21718 a rdf:Statement ;
up:attribution _:21698 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:21719 a rdf:Statement ;
up:attribution _:21699 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005525 .
_:21720 a rdf:Statement ;
up:attribution _:21700 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003746 .
_:21721 a rdf:Statement ;
up:attribution _:21701 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006414 .
_:21722 a rdf:Statement ;
up:attribution _:21702 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:21723 a rdf:Statement ;
up:source unirule:MF_00054 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:21724 a rdf:Statement ;
up:attribution _:21703 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:21725 a rdf:Statement ;
up:source unirule:MF_00054 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:21726 a rdf:Statement ;
up:attribution _:21704 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:21727 a rdf:Statement ;
up:source unirule:MF_00054 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:21728 a rdf:Statement ;
up:attribution _:21705 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:21729 a rdf:Statement ;
up:source unirule:MF_00054 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:21730 a rdf:Statement ;
up:attribution _:21706 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:21731 a rdf:Statement ;
up:source unirule:MF_00054 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:21732 a rdf:Statement ;
up:attribution _:21707 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:21733 a rdf:Statement ;
up:source unirule:MF_00054 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:21734 a rdf:Statement ;
up:attribution _:21708 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:21735 a rdf:Statement ;
up:source unirule:MF_00054 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:21736 a rdf:Statement ;
up:attribution _:21709 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00054
#Rule MF_00054 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-11-28
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00054_B .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03063 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00054_A .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03063 .
})) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00054a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00054a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00054a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch59 faldo:location ?templateMotifSequenceMatchRegionP3092560 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3092562 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30925MF_00054_A55 .
?templateMotifSequenceMatchRegionP3092560 faldo:begin ?templateMotifSequenceMatchBeginP3092561 .
?templateMotifSequenceMatchBeginP3092561 faldo:position ?templateMotifSequenceMatchBeginPositionP3092556 ;
faldo:reference isoform:P30925-1 .
?templateMotifSequenceProfileAlignmentOperationP3092562 edam:has_input signature:MF_00054_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch63 faldo:location ?targetMotifMatchRegionMatch64 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00054_A66 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30925MF_00054_A57 .
?targetMotifMatchRegionMatch64 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00054_A65 .
?targetMotifMatchRegionMatchBeginMF_00054_A65 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00054_A58 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00054_A66 edam:has_input signature:MF_00054_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30925MF_00054_A55, 1, (STRLEN(?templateMotifCigarP30925MF_00054_A55) - STRLEN(REPLACE(?templateMotifCigarP30925MF_00054_A55, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP3092556) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30925MF_00054_A57, 1, (STRLEN(?targetMotifMatchCigarP30925MF_00054_A57) - STRLEN(REPLACE(?targetMotifMatchCigarP30925MF_00054_A57, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30925MF_00054_A57, 1, (STRLEN(?targetMotifMatchCigarP30925MF_00054_A57) - STRLEN(REPLACE(?targetMotifMatchCigarP30925MF_00054_A57, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_00054_A58) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30925MF_00054_A55, 1, (STRLEN(?templateMotifCigarP30925MF_00054_A55) - STRLEN(REPLACE(?templateMotifCigarP30925MF_00054_A55, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP3092556) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30925MF_00054_A57, 1, (STRLEN(?targetMotifMatchCigarP30925MF_00054_A57) - STRLEN(REPLACE(?targetMotifMatchCigarP30925MF_00054_A57, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30925MF_00054_A57, 1, (STRLEN(?targetMotifMatchCigarP30925MF_00054_A57) - STRLEN(REPLACE(?targetMotifMatchCigarP30925MF_00054_A57, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_00054_A58) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER (REGEX('AH[IV][DH]HGKT', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00054a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionP3092577 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3092579 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30925MF_00054_A72 .
?templateMotifSequenceMatchRegionP3092577 faldo:begin ?templateMotifSequenceMatchBeginP3092578 .
?templateMotifSequenceMatchBeginP3092578 faldo:position ?templateMotifSequenceMatchBeginPositionP3092573 ;
faldo:reference isoform:P30925-1 .
?templateMotifSequenceProfileAlignmentOperationP3092579 edam:has_input signature:MF_00054_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00054_A83 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30925MF_00054_A74 .
?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00054_A82 .
?targetMotifMatchRegionMatchBeginMF_00054_A82 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00054_A75 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00054_A83 edam:has_input signature:MF_00054_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30925MF_00054_A72, 1, (STRLEN(?templateMotifCigarP30925MF_00054_A72) - STRLEN(REPLACE(?templateMotifCigarP30925MF_00054_A72, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionP3092573) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30925MF_00054_A74, 1, (STRLEN(?targetMotifMatchCigarP30925MF_00054_A74) - STRLEN(REPLACE(?targetMotifMatchCigarP30925MF_00054_A74, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30925MF_00054_A74, 1, (STRLEN(?targetMotifMatchCigarP30925MF_00054_A74) - STRLEN(REPLACE(?targetMotifMatchCigarP30925MF_00054_A74, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_00054_A75) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30925MF_00054_A72, 1, (STRLEN(?templateMotifCigarP30925MF_00054_A72) - STRLEN(REPLACE(?templateMotifCigarP30925MF_00054_A72, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP3092573) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30925MF_00054_A74, 1, (STRLEN(?targetMotifMatchCigarP30925MF_00054_A74) - STRLEN(REPLACE(?targetMotifMatchCigarP30925MF_00054_A74, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30925MF_00054_A74, 1, (STRLEN(?targetMotifMatchCigarP30925MF_00054_A74) - STRLEN(REPLACE(?targetMotifMatchCigarP30925MF_00054_A74, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_00054_A75) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)) = 'DTPGH')) .
BIND(URI(CONCAT(STR(?this), '#MF_00054a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionP3092594 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3092596 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30925MF_00054_A89 .
?templateMotifSequenceMatchRegionP3092594 faldo:begin ?templateMotifSequenceMatchBeginP3092595 .
?templateMotifSequenceMatchBeginP3092595 faldo:position ?templateMotifSequenceMatchBeginPositionP3092590 ;
faldo:reference isoform:P30925-1 .
?templateMotifSequenceProfileAlignmentOperationP3092596 edam:has_input signature:MF_00054_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00054_A100 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30925MF_00054_A91 .
?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00054_A99 .
?targetMotifMatchRegionMatchBeginMF_00054_A99 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00054_A92 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00054_A100 edam:has_input signature:MF_00054_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30925MF_00054_A89, 1, (STRLEN(?templateMotifCigarP30925MF_00054_A89) - STRLEN(REPLACE(?templateMotifCigarP30925MF_00054_A89, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionP3092590) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30925MF_00054_A91, 1, (STRLEN(?targetMotifMatchCigarP30925MF_00054_A91) - STRLEN(REPLACE(?targetMotifMatchCigarP30925MF_00054_A91, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30925MF_00054_A91, 1, (STRLEN(?targetMotifMatchCigarP30925MF_00054_A91) - STRLEN(REPLACE(?targetMotifMatchCigarP30925MF_00054_A91, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_00054_A92) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30925MF_00054_A89, 1, (STRLEN(?templateMotifCigarP30925MF_00054_A89) - STRLEN(REPLACE(?templateMotifCigarP30925MF_00054_A89, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP3092590) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30925MF_00054_A91, 1, (STRLEN(?targetMotifMatchCigarP30925MF_00054_A91) - STRLEN(REPLACE(?targetMotifMatchCigarP30925MF_00054_A91, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30925MF_00054_A91, 1, (STRLEN(?targetMotifMatchCigarP30925MF_00054_A91) - STRLEN(REPLACE(?targetMotifMatchCigarP30925MF_00054_A91, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_00054_A92) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER (REGEX('NK[IV]D', SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00054a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionP30925111 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30925113 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30925MF_00054_A106 .
?templateMotifSequenceMatchRegionP30925111 faldo:begin ?templateMotifSequenceMatchBeginP30925112 .
?templateMotifSequenceMatchBeginP30925112 faldo:position ?templateMotifSequenceMatchBeginPositionP30925107 ;
faldo:reference isoform:P30925-1 .
?templateMotifSequenceProfileAlignmentOperationP30925113 edam:has_input signature:MF_00054_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00054_A117 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30925MF_00054_A108 .
?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00054_A116 .
?targetMotifMatchRegionMatchBeginMF_00054_A116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00054_A109 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00054_A117 edam:has_input signature:MF_00054_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30925MF_00054_A106, 1, (STRLEN(?templateMotifCigarP30925MF_00054_A106) - STRLEN(REPLACE(?templateMotifCigarP30925MF_00054_A106, CONCAT('^(?:-*[^-]){', STR(((603 - ?templateMotifSequenceMatchBeginPositionP30925107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30925MF_00054_A108, 1, (STRLEN(?targetMotifMatchCigarP30925MF_00054_A108) - STRLEN(REPLACE(?targetMotifMatchCigarP30925MF_00054_A108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30925MF_00054_A108, 1, (STRLEN(?targetMotifMatchCigarP30925MF_00054_A108) - STRLEN(REPLACE(?targetMotifMatchCigarP30925MF_00054_A108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_00054_A109) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00054a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch125 faldo:location ?templateMotifSequenceMatchRegionP0A6M8126 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M8128 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M8MF_00054_B121 .
?templateMotifSequenceMatchRegionP0A6M8126 faldo:begin ?templateMotifSequenceMatchBeginP0A6M8127 .
?templateMotifSequenceMatchBeginP0A6M8127 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M8122 ;
faldo:reference isoform:P0A6M8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M8128 edam:has_input signature:MF_00054_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch129 faldo:location ?targetMotifMatchRegionMatch130 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00054_B132 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M8MF_00054_B123 .
?targetMotifMatchRegionMatch130 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00054_B131 .
?targetMotifMatchRegionMatchBeginMF_00054_B131 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00054_B124 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00054_B132 edam:has_input signature:MF_00054_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M8MF_00054_B121, 1, (STRLEN(?templateMotifCigarP0A6M8MF_00054_B121) - STRLEN(REPLACE(?templateMotifCigarP0A6M8MF_00054_B121, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP0A6M8122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M8MF_00054_B123, 1, (STRLEN(?targetMotifMatchCigarP0A6M8MF_00054_B123) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M8MF_00054_B123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M8MF_00054_B123, 1, (STRLEN(?targetMotifMatchCigarP0A6M8MF_00054_B123) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M8MF_00054_B123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) .
BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_00054_B124) - 1) AS ?thisPositionOn39) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M8MF_00054_B121, 1, (STRLEN(?templateMotifCigarP0A6M8MF_00054_B121) - STRLEN(REPLACE(?templateMotifCigarP0A6M8MF_00054_B121, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP0A6M8122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M8MF_00054_B123, 1, (STRLEN(?targetMotifMatchCigarP0A6M8MF_00054_B123) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M8MF_00054_B123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M8MF_00054_B123, 1, (STRLEN(?targetMotifMatchCigarP0A6M8MF_00054_B123) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M8MF_00054_B123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_00054_B124) - 1) AS ?thisPositionOn40) .
BIND(?this AS ?pfs2t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER (REGEX('[AS]H[IV]D[AS]GKT', SUBSTR(?thisSequenceValue, ?thisPositionOn39, (?thisPositionOn40 - ?thisPositionOn39)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00054a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionP0A6M8143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M8145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M8MF_00054_B138 .
?templateMotifSequenceMatchRegionP0A6M8143 faldo:begin ?templateMotifSequenceMatchBeginP0A6M8144 .
?templateMotifSequenceMatchBeginP0A6M8144 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M8139 ;
faldo:reference isoform:P0A6M8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M8145 edam:has_input signature:MF_00054_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00054_B149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M8MF_00054_B140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00054_B148 .
?targetMotifMatchRegionMatchBeginMF_00054_B148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00054_B141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00054_B149 edam:has_input signature:MF_00054_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M8MF_00054_B138, 1, (STRLEN(?templateMotifCigarP0A6M8MF_00054_B138) - STRLEN(REPLACE(?templateMotifCigarP0A6M8MF_00054_B138, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP0A6M8139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M8MF_00054_B140, 1, (STRLEN(?targetMotifMatchCigarP0A6M8MF_00054_B140) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M8MF_00054_B140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M8MF_00054_B140, 1, (STRLEN(?targetMotifMatchCigarP0A6M8MF_00054_B140) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M8MF_00054_B140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00054_B141) - 1) AS ?thisPositionOn46) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M8MF_00054_B138, 1, (STRLEN(?templateMotifCigarP0A6M8MF_00054_B138) - STRLEN(REPLACE(?templateMotifCigarP0A6M8MF_00054_B138, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP0A6M8139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M8MF_00054_B140, 1, (STRLEN(?targetMotifMatchCigarP0A6M8MF_00054_B140) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M8MF_00054_B140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M8MF_00054_B140, 1, (STRLEN(?targetMotifMatchCigarP0A6M8MF_00054_B140) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M8MF_00054_B140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_00054_B141) - 1) AS ?thisPositionOn47) .
BIND(?this AS ?pfs2t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)) = 'DTPGH')) .
BIND(URI(CONCAT(STR(?this), '#MF_00054a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionP0A6M8160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M8162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M8MF_00054_B155 .
?templateMotifSequenceMatchRegionP0A6M8160 faldo:begin ?templateMotifSequenceMatchBeginP0A6M8161 .
?templateMotifSequenceMatchBeginP0A6M8161 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M8156 ;
faldo:reference isoform:P0A6M8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M8162 edam:has_input signature:MF_00054_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00054_B166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M8MF_00054_B157 .
?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00054_B165 .
?targetMotifMatchRegionMatchBeginMF_00054_B165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00054_B158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00054_B166 edam:has_input signature:MF_00054_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M8MF_00054_B155, 1, (STRLEN(?templateMotifCigarP0A6M8MF_00054_B155) - STRLEN(REPLACE(?templateMotifCigarP0A6M8MF_00054_B155, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionP0A6M8156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M8MF_00054_B157, 1, (STRLEN(?targetMotifMatchCigarP0A6M8MF_00054_B157) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M8MF_00054_B157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M8MF_00054_B157, 1, (STRLEN(?targetMotifMatchCigarP0A6M8MF_00054_B157) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M8MF_00054_B157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_00054_B158) - 1) AS ?thisPositionOn53) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M8MF_00054_B155, 1, (STRLEN(?templateMotifCigarP0A6M8MF_00054_B155) - STRLEN(REPLACE(?templateMotifCigarP0A6M8MF_00054_B155, CONCAT('^(?:-*[^-]){', STR(((145 - ?templateMotifSequenceMatchBeginPositionP0A6M8156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M8MF_00054_B157, 1, (STRLEN(?targetMotifMatchCigarP0A6M8MF_00054_B157) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M8MF_00054_B157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M8MF_00054_B157, 1, (STRLEN(?targetMotifMatchCigarP0A6M8MF_00054_B157) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M8MF_00054_B157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_00054_B158) - 1) AS ?thisPositionOn54) .
BIND(?this AS ?pfs2t171) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER (REGEX('NK[ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn53, (?thisPositionOn54 - ?thisPositionOn53)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00054a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case6) .
}
}
"xsd:string |
