| http://purl.uniprot.org/unirules/MF_00129#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:51293 up:source unirule:MF_00129 .
_:51294 up:source unirule:MF_00129 .
_:51295 up:source unirule:MF_00129 .
_:51296 up:source unirule:MF_00129 .
_:51297 up:source unirule:MF_00129 .
_:51298 up:source unirule:MF_00129 .
_:51299 up:source unirule:MF_00129 .
_:51300 up:source unirule:MF_00129 .
_:51301 up:source unirule:MF_00129 .
_:51302 up:source unirule:MF_00129 .
_:51303 up:source unirule:MF_00129 .
_:51304 up:source unirule:MF_00129 .
_:51305 up:source unirule:MF_00129 .
_:51306 up:source unirule:MF_00129 .
_:51307 up:source unirule:MF_00129 .
_:51308 up:source unirule:MF_00129 .
_:51309 up:source unirule:MF_00129 .
_:51310 up:source unirule:MF_00129 .
_:51311 up:source unirule:MF_00129 .
_:51312 up:source unirule:MF_00129 .
_:51313 up:source unirule:MF_00129 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0005737 ,
GO:0008033 ,
GO:0050660 ,
keyword:274 ,
keyword:285 ,
keyword:520 ,
keyword:819 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Glucose-inhibited division protein A' ;
rdf:type up:Structured_Name .
?gene2 skos:altLabel 'gidA' ;
skos:prefLabel 'mnmG' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34.' .
?annotation4 up:cofactor chebi:57692 ;
rdf:type up:Cofactor_Annotation .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer. Heterotetramer of two MnmE and two MnmG subunits.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MnmG family.' .
?pfs9 up:annotation ?annotation10 ,
?annotation16 ,
?annotation22 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:57692 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:57692 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:57692 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:57692 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:57540 .
_:51314 a rdf:Statement ;
up:attribution _:51293 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:51315 a rdf:Statement ;
up:attribution _:51294 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:51316 a rdf:Statement ;
up:attribution _:51295 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:51317 a rdf:Statement ;
up:attribution _:51296 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:51318 a rdf:Statement ;
up:attribution _:51297 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:51319 a rdf:Statement ;
up:attribution _:51298 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:51320 a rdf:Statement ;
up:attribution _:51299 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:51321 a rdf:Statement ;
up:attribution _:51300 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:51322 a rdf:Statement ;
up:attribution _:51301 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:51323 a rdf:Statement ;
up:attribution _:51302 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:274 .
_:51324 a rdf:Statement ;
up:attribution _:51303 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:51325 a rdf:Statement ;
up:attribution _:51304 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:51326 a rdf:Statement ;
up:attribution _:51305 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:51327 a rdf:Statement ;
up:attribution _:51306 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050660 .
_:51328 a rdf:Statement ;
up:attribution _:51307 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008033 .
_:51329 a rdf:Statement ;
up:attribution _:51308 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:51330 a rdf:Statement ;
up:source unirule:MF_00129 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:51331 a rdf:Statement ;
up:attribution _:51309 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:51332 a rdf:Statement ;
up:source unirule:MF_00129 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:51333 a rdf:Statement ;
up:attribution _:51310 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:51334 a rdf:Statement ;
up:source unirule:MF_00129 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:51335 a rdf:Statement ;
up:attribution _:51311 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:51336 a rdf:Statement ;
up:source unirule:MF_00129 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:51337 a rdf:Statement ;
up:attribution _:51312 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:51338 a rdf:Statement ;
up:source unirule:MF_00129 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:51339 a rdf:Statement ;
up:attribution _:51313 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00129
#Rule MF_00129 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00129 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00129a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00129a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00129a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00129a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00129a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00129a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00129a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch46 faldo:location ?templateMotifSequenceMatchRegionP0A6U347 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6U349 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6U3MF_0012942 .
?templateMotifSequenceMatchRegionP0A6U347 faldo:begin ?templateMotifSequenceMatchBeginP0A6U348 .
?templateMotifSequenceMatchBeginP0A6U348 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6U343 ;
faldo:reference isoform:P0A6U3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6U349 edam:has_input signature:MF_00129 ;
rdf:type edam:operation_0300 .
?targetMotifMatch50 faldo:location ?targetMotifMatchRegionMatch51 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0012953 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6U3MF_0012944 .
?targetMotifMatchRegionMatch51 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0012952 .
?targetMotifMatchRegionMatchBeginMF_0012952 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012945 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0012953 edam:has_input signature:MF_00129 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6U3MF_0012942, 1, (STRLEN(?templateMotifCigarP0A6U3MF_0012942) - STRLEN(REPLACE(?templateMotifCigarP0A6U3MF_0012942, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP0A6U343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6U3MF_0012944, 1, (STRLEN(?targetMotifMatchCigarP0A6U3MF_0012944) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6U3MF_0012944, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6U3MF_0012944, 1, (STRLEN(?targetMotifMatchCigarP0A6U3MF_0012944) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6U3MF_0012944, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0012945) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('[VI]', SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6U3MF_0012942, 1, (STRLEN(?templateMotifCigarP0A6U3MF_0012942) - STRLEN(REPLACE(?templateMotifCigarP0A6U3MF_0012942, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP0A6U343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6U3MF_0012944, 1, (STRLEN(?targetMotifMatchCigarP0A6U3MF_0012944) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6U3MF_0012944, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6U3MF_0012944, 1, (STRLEN(?targetMotifMatchCigarP0A6U3MF_0012944) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6U3MF_0012944, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0012945) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6U3MF_0012942, 1, (STRLEN(?templateMotifCigarP0A6U3MF_0012942) - STRLEN(REPLACE(?templateMotifCigarP0A6U3MF_0012942, CONCAT('^(?:-*[^-]){', STR(((370 - ?templateMotifSequenceMatchBeginPositionP0A6U343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6U3MF_0012944, 1, (STRLEN(?targetMotifMatchCigarP0A6U3MF_0012944) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6U3MF_0012944, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6U3MF_0012944, 1, (STRLEN(?targetMotifMatchCigarP0A6U3MF_0012944) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6U3MF_0012944, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0012945) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER (REGEX('[QN]', SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1))) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionP0A6U368 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6U370 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6U3MF_0012963 .
?templateMotifSequenceMatchRegionP0A6U368 faldo:begin ?templateMotifSequenceMatchBeginP0A6U369 .
?templateMotifSequenceMatchBeginP0A6U369 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6U364 ;
faldo:reference isoform:P0A6U3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6U370 edam:has_input signature:MF_00129 ;
rdf:type edam:operation_0300 .
?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0012974 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6U3MF_0012965 .
?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0012973 .
?targetMotifMatchRegionMatchBeginMF_0012973 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012966 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0012974 edam:has_input signature:MF_00129 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6U3MF_0012963, 1, (STRLEN(?templateMotifCigarP0A6U3MF_0012963) - STRLEN(REPLACE(?templateMotifCigarP0A6U3MF_0012963, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP0A6U364) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6U3MF_0012965, 1, (STRLEN(?targetMotifMatchCigarP0A6U3MF_0012965) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6U3MF_0012965, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6U3MF_0012965, 1, (STRLEN(?targetMotifMatchCigarP0A6U3MF_0012965) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6U3MF_0012965, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0012966) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6U3MF_0012963, 1, (STRLEN(?templateMotifCigarP0A6U3MF_0012963) - STRLEN(REPLACE(?templateMotifCigarP0A6U3MF_0012963, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP0A6U364) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6U3MF_0012965, 1, (STRLEN(?targetMotifMatchCigarP0A6U3MF_0012965) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6U3MF_0012965, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6U3MF_0012965, 1, (STRLEN(?targetMotifMatchCigarP0A6U3MF_0012965) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6U3MF_0012965, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0012966) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs2t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER (REGEX('G[GATL]GH[AS]G', SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00129a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionP0A6U385 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6U387 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6U3MF_0012980 .
?templateMotifSequenceMatchRegionP0A6U385 faldo:begin ?templateMotifSequenceMatchBeginP0A6U386 .
?templateMotifSequenceMatchBeginP0A6U386 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6U381 ;
faldo:reference isoform:P0A6U3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6U387 edam:has_input signature:MF_00129 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0012991 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6U3MF_0012982 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0012990 .
?targetMotifMatchRegionMatchBeginMF_0012990 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012983 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0012991 edam:has_input signature:MF_00129 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6U3MF_0012980, 1, (STRLEN(?templateMotifCigarP0A6U3MF_0012980) - STRLEN(REPLACE(?templateMotifCigarP0A6U3MF_0012980, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionP0A6U381) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6U3MF_0012982, 1, (STRLEN(?targetMotifMatchCigarP0A6U3MF_0012982) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6U3MF_0012982, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6U3MF_0012982, 1, (STRLEN(?targetMotifMatchCigarP0A6U3MF_0012982) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6U3MF_0012982, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0012983) - 1) AS ?thisPositionOn40) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6U3MF_0012980, 1, (STRLEN(?templateMotifCigarP0A6U3MF_0012980) - STRLEN(REPLACE(?templateMotifCigarP0A6U3MF_0012980, CONCAT('^(?:-*[^-]){', STR(((287 - ?templateMotifSequenceMatchBeginPositionP0A6U381) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6U3MF_0012982, 1, (STRLEN(?targetMotifMatchCigarP0A6U3MF_0012982) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6U3MF_0012982, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6U3MF_0012982, 1, (STRLEN(?targetMotifMatchCigarP0A6U3MF_0012982) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6U3MF_0012982, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0012983) - 1) AS ?thisPositionOn41) .
BIND(?this AS ?pfs2t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER (REGEX('[GSA][ARNDCQEGHILKMFPSTWYVBZJUOX][RL][YH]CPS[IVFL][ED][ARNDCQEGHILKMFPSTWYVBZJUOX]K[VIFAL][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][FY]', SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00129a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
}
"xsd:string |
