| http://purl.uniprot.org/unirules/MF_00178#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:71415 up:source unirule:MF_00178 .
_:71416 up:source unirule:MF_00178 .
_:71417 up:source unirule:MF_00178 .
_:71418 up:source unirule:MF_00178 .
_:71419 up:source unirule:MF_00178 .
_:71420 up:source unirule:MF_00178 .
_:71421 up:source unirule:MF_00178 .
_:71422 up:source unirule:MF_00178 .
_:71423 up:source unirule:MF_00178 .
_:71424 up:source unirule:MF_00178 .
_:71425 up:source unirule:MF_00178 .
_:71426 up:source unirule:MF_00178 .
_:71427 up:source unirule:MF_00178 .
_:71428 up:source unirule:MF_00178 .
_:71429 up:source unirule:MF_00178 .
_:71430 up:source unirule:MF_00178 .
_:71431 up:source unirule:MF_00178 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0000906 ,
GO:0009231 ,
keyword:686 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.5.1.78' ;
up:fullName '6,7-dimethyl-8-ribityllumazine synthase' ;
up:shortName 'DMRL synthase' ,
'Lumazine synthase' ,
'LS' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'ribH' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; riboflavin biosynthesis; riboflavin from 2-hydroxy-3-oxobutyl phosphate and 5-amino-6-(D-ribitylamino)uracil: step 1/2.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DMRL synthase family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:15934 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:15934 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:58830 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:15934 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:15934 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:58830 .
_:71432 a rdf:Statement ;
up:attribution _:71415 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:71433 a rdf:Statement ;
up:attribution _:71416 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:71434 a rdf:Statement ;
up:attribution _:71417 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:71435 a rdf:Statement ;
up:attribution _:71418 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:71436 a rdf:Statement ;
up:attribution _:71419 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:71437 a rdf:Statement ;
up:attribution _:71420 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:71438 a rdf:Statement ;
up:attribution _:71421 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:686 .
_:71439 a rdf:Statement ;
up:attribution _:71422 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:71440 a rdf:Statement ;
up:attribution _:71423 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000906 .
_:71441 a rdf:Statement ;
up:attribution _:71424 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009231 .
_:71442 a rdf:Statement ;
up:source unirule:MF_00178 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:71443 a rdf:Statement ;
up:attribution _:71425 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:71444 a rdf:Statement ;
up:source unirule:MF_00178 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:71445 a rdf:Statement ;
up:attribution _:71426 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:71446 a rdf:Statement ;
up:source unirule:MF_00178 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:71447 a rdf:Statement ;
up:attribution _:71427 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:71448 a rdf:Statement ;
up:source unirule:MF_00178 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:71449 a rdf:Statement ;
up:attribution _:71428 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:71450 a rdf:Statement ;
up:source unirule:MF_00178 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:71451 a rdf:Statement ;
up:attribution _:71429 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:71452 a rdf:Statement ;
up:source unirule:MF_00178 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:71453 a rdf:Statement ;
up:attribution _:71430 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:71454 a rdf:Statement ;
up:source unirule:MF_00178 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:71455 a rdf:Statement ;
up:attribution _:71431 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00178
#Rule MF_00178 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon57 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00178 .
?thisOrganism rdfs:subClassOf+ ?supertaxon57 .
BIND(URI(CONCAT(STR(?this), '#MF_00178a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00178a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00178a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00178a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00178a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionO6652963 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO6652965 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO66529MF_0017858 .
?templateMotifSequenceMatchRegionO6652963 faldo:begin ?templateMotifSequenceMatchBeginO6652964 .
?templateMotifSequenceMatchBeginO6652964 faldo:position ?templateMotifSequenceMatchBeginPositionO6652959 ;
faldo:reference isoform:O66529-1 .
?templateMotifSequenceProfileAlignmentOperationO6652965 edam:has_input signature:MF_00178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0017869 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO66529MF_0017860 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0017868 .
?targetMotifMatchRegionMatchBeginMF_0017868 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0017861 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0017869 edam:has_input signature:MF_00178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO66529MF_0017858, 1, (STRLEN(?templateMotifCigarO66529MF_0017858) - STRLEN(REPLACE(?templateMotifCigarO66529MF_0017858, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionO6652959) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO66529MF_0017860, 1, (STRLEN(?targetMotifMatchCigarO66529MF_0017860) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_0017860, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO66529MF_0017860, 1, (STRLEN(?targetMotifMatchCigarO66529MF_0017860) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_0017860, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0017861) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO66529MF_0017858, 1, (STRLEN(?templateMotifCigarO66529MF_0017858) - STRLEN(REPLACE(?templateMotifCigarO66529MF_0017858, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionO6652959) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO66529MF_0017860, 1, (STRLEN(?targetMotifMatchCigarO66529MF_0017860) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_0017860, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO66529MF_0017860, 1, (STRLEN(?targetMotifMatchCigarO66529MF_0017860) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_0017860, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0017861) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((BOUND(?thisPositionOn14) && BOUND(?thisPositionOn15))) .
BIND(URI(CONCAT(STR(?this), '#MF_00178a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionO6652980 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO6652982 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO66529MF_0017875 .
?templateMotifSequenceMatchRegionO6652980 faldo:begin ?templateMotifSequenceMatchBeginO6652981 .
?templateMotifSequenceMatchBeginO6652981 faldo:position ?templateMotifSequenceMatchBeginPositionO6652976 ;
faldo:reference isoform:O66529-1 .
?templateMotifSequenceProfileAlignmentOperationO6652982 edam:has_input signature:MF_00178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0017886 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO66529MF_0017877 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0017885 .
?targetMotifMatchRegionMatchBeginMF_0017885 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0017878 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0017886 edam:has_input signature:MF_00178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO66529MF_0017875, 1, (STRLEN(?templateMotifCigarO66529MF_0017875) - STRLEN(REPLACE(?templateMotifCigarO66529MF_0017875, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionO6652976) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO66529MF_0017877, 1, (STRLEN(?targetMotifMatchCigarO66529MF_0017877) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_0017877, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO66529MF_0017877, 1, (STRLEN(?targetMotifMatchCigarO66529MF_0017877) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_0017877, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0017878) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO66529MF_0017875, 1, (STRLEN(?templateMotifCigarO66529MF_0017875) - STRLEN(REPLACE(?templateMotifCigarO66529MF_0017875, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionO6652976) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO66529MF_0017877, 1, (STRLEN(?targetMotifMatchCigarO66529MF_0017877) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_0017877, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO66529MF_0017877, 1, (STRLEN(?targetMotifMatchCigarO66529MF_0017877) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_0017877, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0017878) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((BOUND(?thisPositionOn21) && BOUND(?thisPositionOn22))) .
BIND(URI(CONCAT(STR(?this), '#MF_00178a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionO6652997 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO6652999 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO66529MF_0017892 .
?templateMotifSequenceMatchRegionO6652997 faldo:begin ?templateMotifSequenceMatchBeginO6652998 .
?templateMotifSequenceMatchBeginO6652998 faldo:position ?templateMotifSequenceMatchBeginPositionO6652993 ;
faldo:reference isoform:O66529-1 .
?templateMotifSequenceProfileAlignmentOperationO6652999 edam:has_input signature:MF_00178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00178103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO66529MF_0017894 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00178102 .
?targetMotifMatchRegionMatchBeginMF_00178102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0017895 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00178103 edam:has_input signature:MF_00178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO66529MF_0017892, 1, (STRLEN(?templateMotifCigarO66529MF_0017892) - STRLEN(REPLACE(?templateMotifCigarO66529MF_0017892, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionO6652993) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO66529MF_0017894, 1, (STRLEN(?targetMotifMatchCigarO66529MF_0017894) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_0017894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO66529MF_0017894, 1, (STRLEN(?targetMotifMatchCigarO66529MF_0017894) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_0017894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0017895) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO66529MF_0017892, 1, (STRLEN(?templateMotifCigarO66529MF_0017892) - STRLEN(REPLACE(?templateMotifCigarO66529MF_0017892, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionO6652993) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO66529MF_0017894, 1, (STRLEN(?targetMotifMatchCigarO66529MF_0017894) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_0017894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO66529MF_0017894, 1, (STRLEN(?targetMotifMatchCigarO66529MF_0017894) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_0017894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0017895) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER (REGEX('[AQSGEDKTN][TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00178a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionO66529114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO66529116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO66529MF_00178109 .
?templateMotifSequenceMatchRegionO66529114 faldo:begin ?templateMotifSequenceMatchBeginO66529115 .
?templateMotifSequenceMatchBeginO66529115 faldo:position ?templateMotifSequenceMatchBeginPositionO66529110 ;
faldo:reference isoform:O66529-1 .
?templateMotifSequenceProfileAlignmentOperationO66529116 edam:has_input signature:MF_00178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00178120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO66529MF_00178111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00178119 .
?targetMotifMatchRegionMatchBeginMF_00178119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00178112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00178120 edam:has_input signature:MF_00178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO66529MF_00178109, 1, (STRLEN(?templateMotifCigarO66529MF_00178109) - STRLEN(REPLACE(?templateMotifCigarO66529MF_00178109, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionO66529110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO66529MF_00178111, 1, (STRLEN(?targetMotifMatchCigarO66529MF_00178111) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_00178111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO66529MF_00178111, 1, (STRLEN(?targetMotifMatchCigarO66529MF_00178111) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_00178111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_00178112) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER (REGEX('[HR]', SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00178a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionO66529129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO66529131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO66529MF_00178124 .
?templateMotifSequenceMatchRegionO66529129 faldo:begin ?templateMotifSequenceMatchBeginO66529130 .
?templateMotifSequenceMatchBeginO66529130 faldo:position ?templateMotifSequenceMatchBeginPositionO66529125 ;
faldo:reference isoform:O66529-1 .
?templateMotifSequenceProfileAlignmentOperationO66529131 edam:has_input signature:MF_00178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00178135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO66529MF_00178126 .
?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00178134 .
?targetMotifMatchRegionMatchBeginMF_00178134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00178127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00178135 edam:has_input signature:MF_00178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO66529MF_00178124, 1, (STRLEN(?templateMotifCigarO66529MF_00178124) - STRLEN(REPLACE(?templateMotifCigarO66529MF_00178124, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionO66529125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO66529MF_00178126, 1, (STRLEN(?targetMotifMatchCigarO66529MF_00178126) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_00178126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO66529MF_00178126, 1, (STRLEN(?targetMotifMatchCigarO66529MF_00178126) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_00178126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_00178127) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER (REGEX('[FWY]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00178a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionO66529144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO66529146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO66529MF_00178139 .
?templateMotifSequenceMatchRegionO66529144 faldo:begin ?templateMotifSequenceMatchBeginO66529145 .
?templateMotifSequenceMatchBeginO66529145 faldo:position ?templateMotifSequenceMatchBeginPositionO66529140 ;
faldo:reference isoform:O66529-1 .
?templateMotifSequenceProfileAlignmentOperationO66529146 edam:has_input signature:MF_00178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00178150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO66529MF_00178141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00178149 .
?targetMotifMatchRegionMatchBeginMF_00178149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00178142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00178150 edam:has_input signature:MF_00178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO66529MF_00178139, 1, (STRLEN(?templateMotifCigarO66529MF_00178139) - STRLEN(REPLACE(?templateMotifCigarO66529MF_00178139, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionO66529140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO66529MF_00178141, 1, (STRLEN(?targetMotifMatchCigarO66529MF_00178141) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_00178141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO66529MF_00178141, 1, (STRLEN(?targetMotifMatchCigarO66529MF_00178141) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_00178141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_00178142) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER (REGEX('[FNLSDMYIHV]', SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00178a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionO66529159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO66529161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO66529MF_00178154 .
?templateMotifSequenceMatchRegionO66529159 faldo:begin ?templateMotifSequenceMatchBeginO66529160 .
?templateMotifSequenceMatchBeginO66529160 faldo:position ?templateMotifSequenceMatchBeginPositionO66529155 ;
faldo:reference isoform:O66529-1 .
?templateMotifSequenceProfileAlignmentOperationO66529161 edam:has_input signature:MF_00178 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00178165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO66529MF_00178156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00178164 .
?targetMotifMatchRegionMatchBeginMF_00178164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00178157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00178165 edam:has_input signature:MF_00178 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO66529MF_00178154, 1, (STRLEN(?templateMotifCigarO66529MF_00178154) - STRLEN(REPLACE(?templateMotifCigarO66529MF_00178154, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionO66529155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO66529MF_00178156, 1, (STRLEN(?targetMotifMatchCigarO66529MF_00178156) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_00178156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO66529MF_00178156, 1, (STRLEN(?targetMotifMatchCigarO66529MF_00178156) - STRLEN(REPLACE(?targetMotifMatchCigarO66529MF_00178156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_00178157) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER (REGEX('[RH]', SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00178a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1763 .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon169 {taxon:187857 taxon:1385 taxon:1236 taxon:183939}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon169 .
BIND(?this AS ?case8) .
}
}
"xsd:string |
