| http://purl.uniprot.org/unirules/MF_00250#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:104716 up:source unirule:MF_00250 .
_:104717 up:source unirule:MF_00250 .
_:104718 up:source unirule:MF_00250 .
_:104719 up:source unirule:MF_00250 .
_:104720 up:source unirule:MF_00250 .
_:104721 up:source unirule:MF_00250 .
_:104722 up:source unirule:MF_00250 .
_:104723 up:source unirule:MF_00250 .
_:104724 up:source unirule:MF_00250 .
_:104725 up:source unirule:MF_00250 .
_:104726 up:source unirule:MF_00250 .
_:104727 up:source unirule:MF_00250 .
_:104728 up:source unirule:MF_00250 .
_:104729 up:source unirule:MF_00250 .
_:104730 up:source unirule:MF_00250 .
_:104731 up:source unirule:MF_00250 .
_:104732 up:source unirule:MF_00250 .
_:104733 up:source unirule:MF_00250 .
_:104734 up:source unirule:MF_00250 .
_:104735 up:source unirule:MF_00250 .
_:104736 up:source unirule:MF_00250 .
_:104737 up:source unirule:MF_00250 .
_:104738 up:source unirule:MF_00250 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0003899 ,
GO:0005737 ,
GO:0006351 ,
keyword:240 ,
keyword:548 ,
keyword:804 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.6' ;
up:fullName 'DNA-directed RNA polymerase subunit Rpo10' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'DNA-directed RNA polymerase subunit N' ;
rdf:type up:Structured_Name .
?gene2 skos:altLabel 'rpoN' ;
skos:prefLabel 'rpo10' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Part of the RNA polymerase complex.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the archaeal Rpo10/eukaryotic RPB10 RNA polymerase subunit family.' .
?case10 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 ,
?annotation30 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29105 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29105 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:29105 .
_:104739 a rdf:Statement ;
up:attribution _:104716 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:104740 a rdf:Statement ;
up:attribution _:104717 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:104741 a rdf:Statement ;
up:attribution _:104718 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:104742 a rdf:Statement ;
up:attribution _:104719 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:104743 a rdf:Statement ;
up:attribution _:104720 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:104744 a rdf:Statement ;
up:attribution _:104721 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:104745 a rdf:Statement ;
up:attribution _:104722 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:104746 a rdf:Statement ;
up:attribution _:104723 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:104747 a rdf:Statement ;
up:attribution _:104724 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:104748 a rdf:Statement ;
up:attribution _:104725 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:104749 a rdf:Statement ;
up:attribution _:104726 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:104750 a rdf:Statement ;
up:attribution _:104727 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:240 .
_:104751 a rdf:Statement ;
up:attribution _:104728 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:104752 a rdf:Statement ;
up:attribution _:104729 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:104753 a rdf:Statement ;
up:attribution _:104730 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003899 .
_:104754 a rdf:Statement ;
up:attribution _:104731 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006351 .
_:104755 a rdf:Statement ;
up:attribution _:104732 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:104756 a rdf:Statement ;
up:attribution _:104733 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:104757 a rdf:Statement ;
up:attribution _:104734 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:104758 a rdf:Statement ;
up:source unirule:MF_00250 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:104759 a rdf:Statement ;
up:attribution _:104735 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:104760 a rdf:Statement ;
up:source unirule:MF_00250 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:104761 a rdf:Statement ;
up:attribution _:104736 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:104762 a rdf:Statement ;
up:source unirule:MF_00250 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:104763 a rdf:Statement ;
up:attribution _:104737 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:104764 a rdf:Statement ;
up:source unirule:MF_00250 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:104765 a rdf:Statement ;
up:attribution _:104738 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00250
#Rule MF_00250 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-03-20
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00250 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00250a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00250a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00250a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00250a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00250a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00250a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00250a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionO2614741 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2614743 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26147MF_0025036 .
?templateMotifSequenceMatchRegionO2614741 faldo:begin ?templateMotifSequenceMatchBeginO2614742 .
?templateMotifSequenceMatchBeginO2614742 faldo:position ?templateMotifSequenceMatchBeginPositionO2614737 ;
faldo:reference isoform:O26147-1 .
?templateMotifSequenceProfileAlignmentOperationO2614743 edam:has_input signature:MF_00250 ;
rdf:type edam:operation_0300 .
?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0025047 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26147MF_0025038 .
?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0025046 .
?targetMotifMatchRegionMatchBeginMF_0025046 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0025039 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0025047 edam:has_input signature:MF_00250 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26147MF_0025036, 1, (STRLEN(?templateMotifCigarO26147MF_0025036) - STRLEN(REPLACE(?templateMotifCigarO26147MF_0025036, CONCAT('^(?:-*[^-]){', STR(((6 - ?templateMotifSequenceMatchBeginPositionO2614737) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26147MF_0025038, 1, (STRLEN(?targetMotifMatchCigarO26147MF_0025038) - STRLEN(REPLACE(?targetMotifMatchCigarO26147MF_0025038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26147MF_0025038, 1, (STRLEN(?targetMotifMatchCigarO26147MF_0025038) - STRLEN(REPLACE(?targetMotifMatchCigarO26147MF_0025038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0025039) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26147MF_0025036, 1, (STRLEN(?templateMotifCigarO26147MF_0025036) - STRLEN(REPLACE(?templateMotifCigarO26147MF_0025036, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionO2614737) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26147MF_0025038, 1, (STRLEN(?targetMotifMatchCigarO26147MF_0025038) - STRLEN(REPLACE(?targetMotifMatchCigarO26147MF_0025038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26147MF_0025038, 1, (STRLEN(?targetMotifMatchCigarO26147MF_0025038) - STRLEN(REPLACE(?targetMotifMatchCigarO26147MF_0025038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0025039) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26147MF_0025036, 1, (STRLEN(?templateMotifCigarO26147MF_0025036) - STRLEN(REPLACE(?templateMotifCigarO26147MF_0025036, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionO2614737) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26147MF_0025038, 1, (STRLEN(?targetMotifMatchCigarO26147MF_0025038) - STRLEN(REPLACE(?targetMotifMatchCigarO26147MF_0025038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26147MF_0025038, 1, (STRLEN(?targetMotifMatchCigarO26147MF_0025038) - STRLEN(REPLACE(?targetMotifMatchCigarO26147MF_0025038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0025039) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26147MF_0025036, 1, (STRLEN(?templateMotifCigarO26147MF_0025036) - STRLEN(REPLACE(?templateMotifCigarO26147MF_0025036, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionO2614737) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26147MF_0025038, 1, (STRLEN(?targetMotifMatchCigarO26147MF_0025038) - STRLEN(REPLACE(?targetMotifMatchCigarO26147MF_0025038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26147MF_0025038, 1, (STRLEN(?targetMotifMatchCigarO26147MF_0025038) - STRLEN(REPLACE(?targetMotifMatchCigarO26147MF_0025038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0025039) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'C')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag60) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag60, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
