| http://purl.uniprot.org/unirules/MF_00320#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:129705 up:source unirule:MF_00320 .
_:129706 up:source unirule:MF_00320 .
_:129707 up:source unirule:MF_00320 .
_:129708 up:source unirule:MF_00320 .
_:129709 up:source unirule:MF_00320 .
_:129710 up:source unirule:MF_00320 .
_:129711 up:source unirule:MF_00320 .
_:129712 up:source unirule:MF_00320 .
_:129713 up:source unirule:MF_00320 .
_:129714 up:source unirule:MF_00320 .
_:129715 up:source unirule:MF_00320 .
_:129716 up:source unirule:MF_00320 .
_:129717 up:source unirule:MF_00320 .
_:129718 up:source unirule:MF_00320 .
_:129719 up:source unirule:MF_00320 .
_:129720 up:source unirule:MF_00320 .
_:129721 up:source unirule:MF_00320 .
_:129722 up:source unirule:MF_00320 .
_:129723 up:source unirule:MF_00320 .
_:129724 up:source unirule:MF_00320 .
_:129725 up:source unirule:MF_00320 .
_:129726 up:source unirule:MF_00320 .
_:129727 up:source unirule:MF_00320 .
_:129728 up:source unirule:MF_00320 .
_:129729 up:source unirule:MF_00320 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0003677 ,
GO:0003899 ,
GO:0005737 ,
GO:0006351 ,
keyword:240 ,
keyword:548 ,
keyword:804 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.6' ;
up:fullName 'DNA-directed RNA polymerase subunit Rpo3' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'DNA-directed RNA polymerase subunit D' ;
rdf:type up:Structured_Name .
?gene2 skos:altLabel 'rpoD' ;
skos:prefLabel 'rpo3' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Part of the RNA polymerase complex.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the archaeal Rpo3/eukaryotic RPB3 RNA polymerase subunit family.' .
?case10 up:classifiedWith GO:0051536 ,
keyword:3 ,
keyword:408 ,
keyword:411 ,
keyword:479 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:21137 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:21137 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:21137 .
_:129730 a rdf:Statement ;
up:attribution _:129705 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:129731 a rdf:Statement ;
up:attribution _:129706 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:129732 a rdf:Statement ;
up:attribution _:129707 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:129733 a rdf:Statement ;
up:attribution _:129708 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:129734 a rdf:Statement ;
up:attribution _:129709 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:129735 a rdf:Statement ;
up:attribution _:129710 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:129736 a rdf:Statement ;
up:attribution _:129711 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:129737 a rdf:Statement ;
up:attribution _:129712 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:129738 a rdf:Statement ;
up:attribution _:129713 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:129739 a rdf:Statement ;
up:attribution _:129714 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:240 .
_:129740 a rdf:Statement ;
up:attribution _:129715 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:129741 a rdf:Statement ;
up:attribution _:129716 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:129742 a rdf:Statement ;
up:attribution _:129717 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:129743 a rdf:Statement ;
up:attribution _:129718 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:129744 a rdf:Statement ;
up:attribution _:129719 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:129745 a rdf:Statement ;
up:attribution _:129720 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003899 .
_:129746 a rdf:Statement ;
up:attribution _:129721 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006351 .
_:129747 a rdf:Statement ;
up:attribution _:129722 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:3 .
_:129748 a rdf:Statement ;
up:attribution _:129723 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:129749 a rdf:Statement ;
up:attribution _:129724 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:129750 a rdf:Statement ;
up:attribution _:129725 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:129751 a rdf:Statement ;
up:attribution _:129726 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051536 .
_:129752 a rdf:Statement ;
up:source unirule:MF_00320 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:129753 a rdf:Statement ;
up:attribution _:129727 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:129754 a rdf:Statement ;
up:source unirule:MF_00320 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:129755 a rdf:Statement ;
up:attribution _:129728 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:129756 a rdf:Statement ;
up:source unirule:MF_00320 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:129757 a rdf:Statement ;
up:attribution _:129729 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00320
#Rule MF_00320 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-03-20
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00320 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00320a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00320a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00320a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00320a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00320a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00320a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00320a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch34 faldo:location ?templateMotifSequenceMatchRegionP9598935 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9598937 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP95989MF_0032030 .
?templateMotifSequenceMatchRegionP9598935 faldo:begin ?templateMotifSequenceMatchBeginP9598936 .
?templateMotifSequenceMatchBeginP9598936 faldo:position ?templateMotifSequenceMatchBeginPositionP9598931 ;
faldo:reference isoform:P95989-1 .
?templateMotifSequenceProfileAlignmentOperationP9598937 edam:has_input signature:MF_00320 ;
rdf:type edam:operation_0300 .
?targetMotifMatch38 faldo:location ?targetMotifMatchRegionMatch39 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0032041 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP95989MF_0032032 .
?targetMotifMatchRegionMatch39 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0032040 .
?targetMotifMatchRegionMatchBeginMF_0032040 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0032033 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0032041 edam:has_input signature:MF_00320 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP95989MF_0032030, 1, (STRLEN(?templateMotifCigarP95989MF_0032030) - STRLEN(REPLACE(?templateMotifCigarP95989MF_0032030, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP9598931) + 1)), '}'), '')))), '[a-z]', '')) AS ?step142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP95989MF_0032032, 1, (STRLEN(?targetMotifMatchCigarP95989MF_0032032) - STRLEN(REPLACE(?targetMotifMatchCigarP95989MF_0032032, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP95989MF_0032032, 1, (STRLEN(?targetMotifMatchCigarP95989MF_0032032) - STRLEN(REPLACE(?targetMotifMatchCigarP95989MF_0032032, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step142), '}'), '')))), '[^-]', ''))) AS ?step243) .
BIND(((?step243 + ?targetMotifMatchRegionMatchBeginPositionMF_0032033) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP95989MF_0032030, 1, (STRLEN(?templateMotifCigarP95989MF_0032030) - STRLEN(REPLACE(?templateMotifCigarP95989MF_0032030, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionP9598931) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP95989MF_0032032, 1, (STRLEN(?targetMotifMatchCigarP95989MF_0032032) - STRLEN(REPLACE(?targetMotifMatchCigarP95989MF_0032032, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP95989MF_0032032, 1, (STRLEN(?targetMotifMatchCigarP95989MF_0032032) - STRLEN(REPLACE(?targetMotifMatchCigarP95989MF_0032032, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0032033) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP95989MF_0032030, 1, (STRLEN(?templateMotifCigarP95989MF_0032030) - STRLEN(REPLACE(?templateMotifCigarP95989MF_0032030, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionP9598931) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP95989MF_0032032, 1, (STRLEN(?targetMotifMatchCigarP95989MF_0032032) - STRLEN(REPLACE(?targetMotifMatchCigarP95989MF_0032032, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP95989MF_0032032, 1, (STRLEN(?targetMotifMatchCigarP95989MF_0032032) - STRLEN(REPLACE(?targetMotifMatchCigarP95989MF_0032032, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0032033) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag51) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag51, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
